Wall clock time and date at job start Tue Mar 31 2020 00:24:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86802 * 119.99934 * 2 1 4 4 H 1.48498 * 109.47198 * 270.00546 * 3 2 1 5 5 H 1.48504 * 109.46789 * 30.00481 * 3 2 1 6 6 H 1.48495 * 109.47196 * 150.00314 * 3 2 1 7 7 C 1.38809 * 119.99933 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99776 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00427 * 359.97438 * 7 2 1 10 10 C 1.46501 * 120.00032 * 179.97438 * 9 7 2 11 11 H 1.08998 * 109.47143 * 324.99751 * 10 9 7 12 12 C 1.52998 * 109.46613 * 204.99743 * 10 9 7 13 13 N 1.46497 * 109.47459 * 55.00386 * 12 10 9 14 14 C 1.34774 * 120.00244 * 179.97438 * 13 12 10 15 15 O 1.21284 * 120.00144 * 0.02562 * 14 13 12 16 16 C 1.50707 * 119.99883 * 179.97438 * 14 13 12 17 17 C 1.52998 * 119.75212 * 249.84193 * 16 14 13 18 18 C 1.53006 * 60.37534 * 248.87965 * 17 16 14 19 19 H 1.08997 * 119.29867 * 111.31344 * 18 17 16 20 20 C 1.54268 * 118.68731 * 266.65080 * 18 17 16 21 21 C 1.54685 * 104.49665 * 87.02454 * 20 18 17 22 22 C 1.54266 * 117.41216 * 45.29312 * 16 14 13 23 23 C 1.53001 * 109.46851 * 84.99921 * 10 9 7 24 24 C 1.52997 * 117.50198 * 8.74679 * 23 10 9 25 25 C 1.52999 * 117.50200 * 300.08576 * 23 10 9 26 26 H 0.96998 * 120.00494 * 359.97438 * 1 2 3 27 27 H 0.96999 * 119.99475 * 0.02562 * 9 7 2 28 28 H 1.08993 * 109.47689 * 294.99886 * 12 10 9 29 29 H 1.09008 * 109.46465 * 175.00187 * 12 10 9 30 30 H 0.97007 * 119.99740 * 359.97438 * 13 12 10 31 31 H 1.08994 * 117.46253 * 356.47431 * 17 16 14 32 32 H 1.08997 * 117.45883 * 141.28084 * 17 16 14 33 33 H 1.08998 * 110.49024 * 206.50408 * 20 18 17 34 34 H 1.09006 * 110.48732 * 329.01981 * 20 18 17 35 35 H 1.08996 * 111.14411 * 204.27417 * 21 20 18 36 36 H 1.08993 * 110.26414 * 80.96866 * 21 20 18 37 37 H 1.09002 * 110.48629 * 235.04772 * 22 16 14 38 38 H 1.08998 * 110.48744 * 357.55676 * 22 16 14 39 39 H 1.09006 * 115.54754 * 154.41364 * 23 10 9 40 40 H 1.09007 * 117.50048 * 359.97438 * 24 23 10 41 41 H 1.08995 * 117.50214 * 145.01846 * 24 23 10 42 42 H 1.08994 * 117.49776 * 214.98106 * 25 23 10 43 43 H 1.09005 * 117.49612 * 359.97438 * 25 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6526 0.7002 6 1 3.5477 1.4402 0.6999 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0582 -3.6568 -0.0017 11 1 2.9684 -3.5502 -0.5918 12 6 1.1805 -4.7518 -0.6111 13 7 0.7328 -4.3346 -1.9421 14 6 -0.0568 -5.1465 -2.6727 15 8 -0.3971 -6.2224 -2.2281 16 6 -0.5177 -4.7171 -4.0418 17 6 -1.9892 -4.3668 -4.2723 18 6 -1.4030 -5.6280 -4.9102 19 1 -1.7293 -6.6059 -4.5561 20 6 -0.8482 -5.5419 -6.3470 21 6 0.6210 -5.0920 -6.1685 22 6 0.5353 -4.0978 -4.9839 23 6 2.4232 -4.0361 1.4349 24 6 1.8154 -3.1997 2.5627 25 6 3.3012 -3.0611 2.2218 26 1 -0.4851 0.8400 0.0004 27 1 0.3556 -2.3881 -0.0005 28 1 0.3135 -4.9201 0.0277 29 1 1.7554 -5.6742 -0.6936 30 1 1.0047 -3.4740 -2.2976 31 1 -2.6744 -4.4990 -3.4351 32 1 -2.2086 -3.5262 -4.9304 33 1 -0.9026 -6.5145 -6.8360 34 1 -1.3950 -4.7952 -6.9230 35 1 0.9914 -4.5941 -7.0646 36 1 1.2486 -5.9454 -5.9120 37 1 0.2073 -3.1180 -5.3311 38 1 1.4989 -4.0202 -4.4805 39 1 2.5646 -5.1013 1.6184 40 1 1.1558 -2.3788 2.2812 41 1 1.5574 -3.7144 3.4881 42 1 4.0200 -3.4847 2.9231 43 1 3.6193 -2.1495 1.7158 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266421623.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:24:32 Heat of formation + Delta-G solvation = 18.656286 kcal Electronic energy + Delta-G solvation = -22170.991427 eV Core-core repulsion = 19024.589266 eV Total energy + Delta-G solvation = -3146.402161 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.33291 -38.26138 -37.33144 -34.44036 -33.24028 -31.67880 -30.90590 -28.87973 -27.70489 -24.18021 -23.28707 -22.48373 -21.67635 -21.28930 -20.24720 -19.46483 -18.61755 -17.36468 -16.87223 -15.69672 -15.33841 -15.12549 -14.67455 -14.46098 -14.32333 -13.62061 -13.41523 -13.28198 -13.08343 -12.88678 -12.82329 -12.08154 -11.70045 -11.29822 -11.21072 -11.17967 -11.06616 -10.99740 -10.90357 -10.84975 -10.52354 -10.33729 -10.13168 -9.71079 -9.67048 -9.53592 -9.34779 -9.14558 -8.98831 -8.57141 -7.07725 -5.84661 -3.14764 2.84753 3.37260 3.43923 3.45167 3.50136 3.75916 4.42584 4.48800 4.63145 4.63903 4.77278 5.07226 5.19556 5.30321 5.37775 5.40271 5.46607 5.53415 5.58299 5.64648 5.73830 5.77460 5.77868 5.84226 5.88742 5.98337 6.01871 6.04896 6.06708 6.13627 6.19552 6.32135 6.38426 6.47659 6.65389 6.75985 6.93491 7.01759 7.27549 7.64300 8.01333 8.32376 8.64352 9.44756 9.98729 10.35096 11.36794 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.016237 B = 0.005120 C = 0.004285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.028885 B = 5467.039104 C = 6532.588606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.007 4.007 3 Si 0.902 3.098 4 H -0.291 1.291 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.240 4.240 8 H 0.071 0.929 9 N -0.717 5.717 10 C 0.192 3.808 11 H 0.056 0.944 12 C 0.119 3.881 13 N -0.706 5.706 14 C 0.554 3.446 15 O -0.557 6.557 16 C -0.173 4.173 17 C -0.119 4.119 18 C -0.133 4.133 19 H 0.116 0.884 20 C -0.095 4.095 21 C -0.122 4.122 22 C -0.087 4.087 23 C -0.178 4.178 24 C -0.163 4.163 25 C -0.175 4.175 26 H 0.255 0.745 27 H 0.386 0.614 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.411 0.589 31 H 0.102 0.898 32 H 0.101 0.899 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.085 0.915 40 H 0.118 0.882 41 H 0.068 0.932 42 H 0.071 0.929 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.696 -8.897 -9.005 12.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.204 4.204 3 Si 0.733 3.267 4 H -0.218 1.218 5 H -0.219 1.219 6 H -0.208 1.208 7 C -0.370 4.370 8 H 0.089 0.911 9 N -0.358 5.358 10 C 0.081 3.919 11 H 0.074 0.926 12 C -0.005 4.005 13 N -0.357 5.357 14 C 0.339 3.661 15 O -0.436 6.436 16 C -0.176 4.176 17 C -0.156 4.156 18 C -0.152 4.152 19 H 0.134 0.866 20 C -0.133 4.133 21 C -0.160 4.160 22 C -0.125 4.125 23 C -0.200 4.200 24 C -0.200 4.200 25 C -0.212 4.212 26 H 0.065 0.935 27 H 0.221 0.779 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.248 0.752 31 H 0.121 0.879 32 H 0.119 0.881 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.095 0.905 38 H 0.092 0.908 39 H 0.103 0.897 40 H 0.137 0.863 41 H 0.087 0.913 42 H 0.090 0.910 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 0.603 -9.500 -8.674 12.878 hybrid contribution 0.355 1.370 0.183 1.427 sum 0.958 -8.130 -8.492 11.795 Atomic orbital electron populations 1.69656 1.05019 1.25718 1.57153 1.24702 0.95400 0.97515 1.02784 0.86273 0.78763 0.84169 0.77464 1.21804 1.21870 1.20780 1.19159 0.90882 0.83812 1.43193 0.91095 1.42465 1.05840 0.99449 1.88081 1.19987 0.94063 0.86098 0.91721 0.92565 1.21577 0.98702 0.97347 0.82916 1.45901 1.50474 1.21681 1.17633 1.19260 0.77947 0.83881 0.84971 1.90646 1.57636 1.22944 1.72417 1.22328 0.93395 1.07342 0.94566 1.23068 0.92097 0.98168 1.02275 1.23328 1.02206 0.96177 0.93498 0.86569 1.21935 0.95545 1.01502 0.94297 1.22639 0.96602 0.98823 0.97907 1.21925 0.97525 0.98528 0.94475 1.23070 1.05989 0.95328 0.95567 1.22909 0.96710 1.03513 0.96838 1.22849 0.93471 1.01884 1.03031 0.93463 0.77916 0.91783 0.91977 0.75234 0.87919 0.88084 0.91071 0.91300 0.91031 0.91388 0.90496 0.90758 0.89658 0.86342 0.91307 0.91046 0.87931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.15 13.06 55.49 0.72 -25.43 16 2 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 3 Si 0.90 21.23 29.55 -169.99 -5.02 16.21 16 4 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 7 C -0.24 -5.94 8.16 -15.06 -0.12 -6.06 16 8 H 0.07 1.74 6.91 -52.48 -0.36 1.38 16 9 N -0.72 -15.91 3.08 -53.43 -0.16 -16.07 16 10 C 0.19 3.55 2.86 -67.93 -0.19 3.36 16 11 H 0.06 1.06 8.08 -51.93 -0.42 0.64 16 12 C 0.12 2.07 5.21 -4.04 -0.02 2.05 16 13 N -0.71 -12.08 5.21 -60.29 -0.31 -12.40 16 14 C 0.55 9.62 7.43 -10.98 -0.08 9.54 16 15 O -0.56 -11.32 16.79 5.55 0.09 -11.23 16 16 C -0.17 -2.44 2.67 -154.54 -0.41 -2.85 16 17 C -0.12 -1.51 9.89 -26.73 -0.26 -1.78 16 18 C -0.13 -1.65 6.54 -89.50 -0.58 -2.23 16 19 H 0.12 1.53 8.14 -51.93 -0.42 1.11 16 20 C -0.10 -0.93 6.62 -25.18 -0.17 -1.10 16 21 C -0.12 -1.23 6.91 -24.85 -0.17 -1.40 16 22 C -0.09 -1.04 6.18 -25.07 -0.16 -1.20 16 23 C -0.18 -3.12 5.70 -90.62 -0.52 -3.64 16 24 C -0.16 -3.06 9.74 -26.70 -0.26 -3.32 16 25 C -0.18 -3.14 9.87 -26.70 -0.26 -3.41 16 26 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 27 H 0.39 9.49 7.80 -40.82 -0.32 9.17 16 28 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.06 1.02 8.14 -51.92 -0.42 0.60 16 30 H 0.41 7.12 7.65 -40.82 -0.31 6.81 16 31 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 32 H 0.10 1.12 8.14 -51.93 -0.42 0.69 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.07 0.92 7.60 -51.93 -0.39 0.52 16 39 H 0.09 1.35 8.11 -51.93 -0.42 0.93 16 40 H 0.12 2.66 6.68 -51.92 -0.35 2.32 16 41 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.10 2.05 6.22 -51.93 -0.32 1.73 16 LS Contribution 347.36 15.07 5.23 5.23 Total: -1.00 -28.28 347.36 -9.87 -38.15 By element: Atomic # 1 Polarization: 24.98 SS G_CDS: -7.11 Total: 17.88 kcal Atomic # 6 Polarization: -9.02 SS G_CDS: -3.31 Total: -12.34 kcal Atomic # 7 Polarization: -54.14 SS G_CDS: 0.25 Total: -53.90 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: 0.09 Total: -11.23 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -28.28 -9.87 -38.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266421623.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.803 kcal (2) G-P(sol) polarization free energy of solvation -28.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds