Wall clock time and date at job start Tue Mar 31 2020 00:24:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86802 * 119.99934 * 2 1 4 4 H 1.48498 * 109.47198 * 270.00546 * 3 2 1 5 5 H 1.48504 * 109.46789 * 30.00481 * 3 2 1 6 6 H 1.48495 * 109.47196 * 150.00314 * 3 2 1 7 7 C 1.38809 * 119.99933 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99776 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00427 * 359.97438 * 7 2 1 10 10 C 1.46501 * 120.00032 * 179.97438 * 9 7 2 11 11 H 1.08998 * 109.47143 * 324.99751 * 10 9 7 12 12 C 1.52998 * 109.46613 * 204.99743 * 10 9 7 13 13 N 1.46497 * 109.47459 * 55.00386 * 12 10 9 14 14 C 1.34774 * 120.00244 * 179.97438 * 13 12 10 15 15 O 1.21284 * 120.00144 * 0.02562 * 14 13 12 16 16 C 1.50707 * 119.99883 * 179.97438 * 14 13 12 17 17 C 1.52998 * 119.75212 * 249.84193 * 16 14 13 18 18 C 1.53006 * 60.37534 * 248.87965 * 17 16 14 19 19 H 1.08997 * 119.29867 * 111.31344 * 18 17 16 20 20 C 1.54268 * 118.68731 * 266.65080 * 18 17 16 21 21 C 1.54685 * 104.49665 * 87.02454 * 20 18 17 22 22 C 1.54266 * 117.41216 * 45.29312 * 16 14 13 23 23 C 1.53001 * 109.46851 * 84.99921 * 10 9 7 24 24 C 1.52997 * 117.50198 * 8.74679 * 23 10 9 25 25 C 1.52999 * 117.50200 * 300.08576 * 23 10 9 26 26 H 0.96998 * 120.00494 * 359.97438 * 1 2 3 27 27 H 0.96999 * 119.99475 * 0.02562 * 9 7 2 28 28 H 1.08993 * 109.47689 * 294.99886 * 12 10 9 29 29 H 1.09008 * 109.46465 * 175.00187 * 12 10 9 30 30 H 0.97007 * 119.99740 * 359.97438 * 13 12 10 31 31 H 1.08994 * 117.46253 * 356.47431 * 17 16 14 32 32 H 1.08997 * 117.45883 * 141.28084 * 17 16 14 33 33 H 1.08998 * 110.49024 * 206.50408 * 20 18 17 34 34 H 1.09006 * 110.48732 * 329.01981 * 20 18 17 35 35 H 1.08996 * 111.14411 * 204.27417 * 21 20 18 36 36 H 1.08993 * 110.26414 * 80.96866 * 21 20 18 37 37 H 1.09002 * 110.48629 * 235.04772 * 22 16 14 38 38 H 1.08998 * 110.48744 * 357.55676 * 22 16 14 39 39 H 1.09006 * 115.54754 * 154.41364 * 23 10 9 40 40 H 1.09007 * 117.50048 * 359.97438 * 24 23 10 41 41 H 1.08995 * 117.50214 * 145.01846 * 24 23 10 42 42 H 1.08994 * 117.49776 * 214.98106 * 25 23 10 43 43 H 1.09005 * 117.49612 * 359.97438 * 25 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6526 0.7002 6 1 3.5477 1.4402 0.6999 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0582 -3.6568 -0.0017 11 1 2.9684 -3.5502 -0.5918 12 6 1.1805 -4.7518 -0.6111 13 7 0.7328 -4.3346 -1.9421 14 6 -0.0568 -5.1465 -2.6727 15 8 -0.3971 -6.2224 -2.2281 16 6 -0.5177 -4.7171 -4.0418 17 6 -1.9892 -4.3668 -4.2723 18 6 -1.4030 -5.6280 -4.9102 19 1 -1.7293 -6.6059 -4.5561 20 6 -0.8482 -5.5419 -6.3470 21 6 0.6210 -5.0920 -6.1685 22 6 0.5353 -4.0978 -4.9839 23 6 2.4232 -4.0361 1.4349 24 6 1.8154 -3.1997 2.5627 25 6 3.3012 -3.0611 2.2218 26 1 -0.4851 0.8400 0.0004 27 1 0.3556 -2.3881 -0.0005 28 1 0.3135 -4.9201 0.0277 29 1 1.7554 -5.6742 -0.6936 30 1 1.0047 -3.4740 -2.2976 31 1 -2.6744 -4.4990 -3.4351 32 1 -2.2086 -3.5262 -4.9304 33 1 -0.9026 -6.5145 -6.8360 34 1 -1.3950 -4.7952 -6.9230 35 1 0.9914 -4.5941 -7.0646 36 1 1.2486 -5.9454 -5.9120 37 1 0.2073 -3.1180 -5.3311 38 1 1.4989 -4.0202 -4.4805 39 1 2.5646 -5.1013 1.6184 40 1 1.1558 -2.3788 2.2812 41 1 1.5574 -3.7144 3.4881 42 1 4.0200 -3.4847 2.9231 43 1 3.6193 -2.1495 1.7158 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266421623.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:24:29 Heat of formation + Delta-G solvation = 3.088942 kcal Electronic energy + Delta-G solvation = -22171.666478 eV Core-core repulsion = 19024.589266 eV Total energy + Delta-G solvation = -3147.077211 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 2.17 seconds Orbital eigenvalues (eV) -41.50444 -39.62385 -38.75734 -35.92091 -35.06046 -32.66084 -32.55991 -30.28061 -28.95129 -25.79986 -24.86612 -23.62350 -23.05870 -22.59298 -21.21392 -20.87904 -20.00774 -19.14378 -18.13954 -17.09959 -16.85610 -16.36372 -16.27041 -15.85799 -15.68846 -15.15815 -14.94733 -14.50776 -14.33851 -14.04380 -13.92445 -13.69983 -12.96598 -12.86533 -12.79668 -12.63332 -12.59419 -12.13316 -12.04788 -11.99239 -11.95625 -11.85810 -11.58893 -11.33564 -11.03868 -10.95655 -10.67670 -10.66530 -10.58104 -10.01856 -8.99127 -7.87560 -5.15413 1.49516 1.51480 1.52798 1.57823 2.21466 2.58972 2.66891 3.12721 3.46667 3.49222 3.66297 3.76377 3.86787 3.94212 3.98856 4.25579 4.27725 4.32270 4.41203 4.47916 4.50609 4.57678 4.64198 4.66107 4.74074 4.81580 4.91421 4.96101 4.98136 5.01199 5.16534 5.17456 5.20325 5.24200 5.29172 5.41807 5.47248 5.54908 5.66624 5.67755 6.32007 6.60243 7.24621 7.40531 8.10530 8.36580 9.34875 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.016237 B = 0.005120 C = 0.004285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.028885 B = 5467.039104 C = 6532.588606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.964 5.964 2 C -0.065 4.065 3 Si 0.957 3.043 4 H -0.290 1.290 5 H -0.305 1.305 6 H -0.273 1.273 7 C -0.218 4.218 8 H 0.076 0.924 9 N -0.719 5.719 10 C 0.194 3.806 11 H 0.061 0.939 12 C 0.127 3.873 13 N -0.705 5.705 14 C 0.548 3.452 15 O -0.592 6.592 16 C -0.195 4.195 17 C -0.118 4.118 18 C -0.124 4.124 19 H 0.103 0.897 20 C -0.089 4.089 21 C -0.117 4.117 22 C -0.085 4.085 23 C -0.170 4.170 24 C -0.173 4.173 25 C -0.168 4.168 26 H 0.247 0.753 27 H 0.373 0.627 28 H 0.048 0.952 29 H 0.077 0.923 30 H 0.410 0.590 31 H 0.088 0.912 32 H 0.122 0.878 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.094 0.906 36 H 0.061 0.939 37 H 0.084 0.916 38 H 0.065 0.935 39 H 0.114 0.886 40 H 0.077 0.923 41 H 0.090 0.910 42 H 0.102 0.898 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.034 -9.637 -10.162 14.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.615 5.615 2 C -0.258 4.258 3 Si 0.788 3.212 4 H -0.217 1.217 5 H -0.232 1.232 6 H -0.198 1.198 7 C -0.350 4.350 8 H 0.094 0.906 9 N -0.359 5.359 10 C 0.085 3.915 11 H 0.078 0.922 12 C 0.003 3.997 13 N -0.354 5.354 14 C 0.336 3.664 15 O -0.474 6.474 16 C -0.198 4.198 17 C -0.155 4.155 18 C -0.143 4.143 19 H 0.121 0.879 20 C -0.127 4.127 21 C -0.155 4.155 22 C -0.123 4.123 23 C -0.191 4.191 24 C -0.210 4.210 25 C -0.205 4.205 26 H 0.056 0.944 27 H 0.206 0.794 28 H 0.067 0.933 29 H 0.095 0.905 30 H 0.247 0.753 31 H 0.107 0.893 32 H 0.140 0.860 33 H 0.104 0.896 34 H 0.104 0.896 35 H 0.112 0.888 36 H 0.080 0.920 37 H 0.103 0.897 38 H 0.084 0.916 39 H 0.132 0.868 40 H 0.096 0.904 41 H 0.109 0.891 42 H 0.120 0.880 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.992 -10.260 -9.835 14.352 hybrid contribution -0.040 1.507 0.594 1.621 sum 1.952 -8.753 -9.241 12.877 Atomic orbital electron populations 1.69799 1.06332 1.25545 1.59840 1.25302 0.95969 1.00200 1.04314 0.85382 0.77778 0.80868 0.77173 1.21695 1.23213 1.19833 1.19409 0.91076 0.84518 1.40006 0.90600 1.42507 1.05218 1.00239 1.87943 1.20108 0.93870 0.84813 0.92759 0.92151 1.21467 0.97971 0.97425 0.82854 1.45914 1.50468 1.21576 1.17484 1.19859 0.77178 0.83270 0.86068 1.90616 1.58850 1.24383 1.73539 1.22427 0.94655 1.09332 0.93348 1.23145 0.90769 0.99331 1.02263 1.23451 1.00756 0.95233 0.94837 0.87876 1.21974 0.95206 1.02953 0.92518 1.22638 0.96770 0.98211 0.97841 1.21962 0.96294 0.99372 0.94633 1.23056 1.05199 0.96759 0.94103 1.22770 0.96831 1.03053 0.98366 1.22838 0.93326 1.01101 1.03237 0.94408 0.79438 0.93341 0.90455 0.75309 0.89315 0.86023 0.89616 0.89589 0.88764 0.91974 0.89698 0.91615 0.86799 0.90428 0.89136 0.88012 0.90266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -55.73 13.06 21.65 0.28 -55.45 16 2 C -0.07 -3.48 5.50 84.86 0.47 -3.01 16 3 Si 0.96 44.03 29.55 68.60 2.03 46.06 16 4 H -0.29 -13.14 7.11 99.48 0.71 -12.44 16 5 H -0.30 -14.55 7.11 99.48 0.71 -13.85 16 6 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 7 C -0.22 -10.82 8.16 84.03 0.69 -10.14 16 8 H 0.08 3.66 6.91 -2.91 -0.02 3.64 16 9 N -0.72 -32.16 3.08 -322.94 -0.99 -33.15 16 10 C 0.19 7.00 2.86 44.99 0.13 7.13 16 11 H 0.06 2.17 8.08 -2.39 -0.02 2.15 16 12 C 0.13 4.37 5.21 86.38 0.45 4.82 16 13 N -0.70 -24.19 5.21 -463.06 -2.41 -26.61 16 14 C 0.55 19.21 7.43 87.66 0.65 19.86 16 15 O -0.59 -24.40 16.79 -3.04 -0.05 -24.45 16 16 C -0.19 -5.38 2.67 -52.20 -0.14 -5.52 16 17 C -0.12 -2.92 9.89 30.60 0.30 -2.61 16 18 C -0.12 -2.92 6.54 -10.07 -0.07 -2.99 16 19 H 0.10 2.70 8.14 -2.39 -0.02 2.68 16 20 C -0.09 -1.50 6.62 31.60 0.21 -1.29 16 21 C -0.12 -2.06 6.91 31.82 0.22 -1.84 16 22 C -0.08 -1.91 6.18 31.67 0.20 -1.71 16 23 C -0.17 -5.64 5.70 -10.79 -0.06 -5.70 16 24 C -0.17 -6.34 9.74 30.62 0.30 -6.04 16 25 C -0.17 -5.68 9.87 30.62 0.30 -5.37 16 26 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 27 H 0.37 18.81 7.80 -92.71 -0.72 18.08 16 28 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.08 2.44 8.14 -2.38 -0.02 2.42 16 30 H 0.41 14.28 7.65 -92.70 -0.71 13.57 16 31 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 32 H 0.12 2.48 8.14 -2.39 -0.02 2.46 16 33 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.09 1.20 8.14 -2.38 -0.02 1.18 16 35 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.07 1.56 7.60 -2.39 -0.02 1.55 16 39 H 0.11 3.21 8.11 -2.38 -0.02 3.19 16 40 H 0.08 3.55 6.68 -2.38 -0.02 3.53 16 41 H 0.09 2.90 8.14 -2.39 -0.02 2.88 16 42 H 0.10 2.84 8.14 -2.39 -0.02 2.82 16 43 H 0.08 3.07 6.22 -2.38 -0.01 3.05 16 Total: -1.00 -61.56 347.36 2.07 -59.49 By element: Atomic # 1 Polarization: 48.97 SS G_CDS: -0.42 Total: 48.54 kcal Atomic # 6 Polarization: -18.08 SS G_CDS: 3.64 Total: -14.43 kcal Atomic # 7 Polarization: -112.08 SS G_CDS: -3.13 Total: -115.21 kcal Atomic # 8 Polarization: -24.40 SS G_CDS: -0.05 Total: -24.45 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -61.56 2.07 -59.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266421623.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.582 kcal (2) G-P(sol) polarization free energy of solvation -61.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.17 seconds