Wall clock time and date at job start Tue Mar 31 2020 00:51:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 119.99894 * 2 1 4 4 H 1.48497 * 109.47476 * 270.00082 * 3 2 1 5 5 H 1.48498 * 109.46924 * 30.00545 * 3 2 1 6 6 H 1.48502 * 109.46744 * 150.00033 * 3 2 1 7 7 C 1.38815 * 119.99643 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00256 * 0.02562 * 7 2 1 9 9 N 1.36940 * 119.99500 * 179.97438 * 7 2 1 10 10 C 1.46497 * 119.99570 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.46729 * 180.02562 * 10 9 7 12 12 C 1.31000 * 119.99892 * 127.01090 * 11 10 9 13 13 C 1.50702 * 120.00065 * 7.55089 * 12 11 10 14 14 N 1.46507 * 109.46870 * 127.16133 * 13 12 11 15 15 C 1.34777 * 119.99885 * 180.02562 * 14 13 12 16 16 O 1.21275 * 120.00121 * 359.97438 * 15 14 13 17 17 C 1.50701 * 119.99891 * 179.97438 * 15 14 13 18 18 C 1.53001 * 109.47192 * 180.02562 * 17 15 14 19 19 H 1.09007 * 110.53791 * 52.38755 * 18 17 15 20 20 C 1.54887 * 110.48345 * 289.77437 * 18 17 15 21 21 C 1.54889 * 102.74741 * 203.37767 * 20 18 17 22 22 C 1.54267 * 104.19612 * 37.94323 * 21 20 18 23 23 H 1.08996 * 117.76182 * 196.02888 * 22 21 20 24 24 C 1.53004 * 118.19561 * 40.56823 * 22 21 20 25 25 C 1.52998 * 60.37665 * 266.38283 * 24 22 21 26 26 H 1.08997 * 119.30200 * 248.69228 * 25 24 22 27 27 H 0.96998 * 120.00009 * 359.97438 * 1 2 3 28 28 H 0.96996 * 119.99951 * 0.02562 * 9 7 2 29 29 H 1.09004 * 109.47318 * 60.00403 * 10 9 7 30 30 H 1.08994 * 109.47338 * 299.99939 * 10 9 7 31 31 H 1.07994 * 120.00081 * 307.00396 * 11 10 9 32 32 H 1.07999 * 119.99986 * 187.56174 * 12 11 10 33 33 H 1.08999 * 109.46824 * 7.16704 * 13 12 11 34 34 H 1.08998 * 109.47283 * 247.15880 * 13 12 11 35 35 H 0.96995 * 119.99954 * 359.97438 * 14 13 12 36 36 H 1.08996 * 109.47130 * 59.99607 * 17 15 14 37 37 H 1.09002 * 109.47087 * 300.00326 * 17 15 14 38 38 H 1.09001 * 110.75893 * 321.69712 * 20 18 17 39 39 H 1.09001 * 110.75648 * 84.88425 * 20 18 17 40 40 H 1.09004 * 110.49113 * 279.26526 * 21 20 18 41 41 H 1.08998 * 110.48676 * 156.62304 * 21 20 18 42 42 H 1.08997 * 117.46327 * 13.98495 * 24 22 21 43 43 H 1.09002 * 117.46046 * 158.80606 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4476 2.6526 0.7002 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0014 9 7 3.3796 -1.2022 -0.0011 10 6 4.1120 -2.4709 -0.0011 11 6 5.5937 -2.1955 -0.0011 12 6 6.3624 -2.7473 0.9049 13 6 5.7992 -3.7869 1.8393 14 7 6.6366 -4.9882 1.7950 15 6 6.3230 -6.0566 2.5543 16 8 5.3478 -6.0234 3.2745 17 6 7.1840 -7.2926 2.5083 18 6 6.6116 -8.3485 3.4560 19 1 5.5548 -8.5163 3.2482 20 6 6.8127 -7.9193 4.9306 21 6 6.7663 -9.2692 5.6888 22 6 7.5001 -10.2533 4.7545 23 1 7.3707 -11.3199 4.9380 24 6 8.7589 -9.7647 4.0349 25 6 7.4018 -9.6679 3.3349 26 1 7.1999 -10.3032 2.4726 27 1 -0.4850 0.8400 0.0004 28 1 3.8646 -0.3622 -0.0007 29 1 3.8484 -3.0427 -0.8909 30 1 3.8491 -3.0423 0.8891 31 1 6.0217 -1.5434 -0.7479 32 1 7.3998 -2.4570 0.9822 33 1 4.7845 -4.0398 1.5321 34 1 5.7837 -3.3921 2.8551 35 1 7.4163 -5.0149 1.2186 36 1 8.1989 -7.0400 2.8154 37 1 7.1995 -7.6870 1.4922 38 1 7.7799 -7.4346 5.0634 39 1 6.0055 -7.2628 5.2553 40 1 5.7345 -9.5857 5.8416 41 1 7.2869 -9.1888 6.6430 42 1 9.2106 -8.8370 4.3861 43 1 9.4572 -10.5202 3.6747 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268557628.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:51:10 Heat of formation + Delta-G solvation = 15.407918 kcal Electronic energy + Delta-G solvation = -20724.557659 eV Core-core repulsion = 17578.014638 eV Total energy + Delta-G solvation = -3146.543021 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.47806 -39.17554 -36.69414 -34.60798 -32.95430 -32.50978 -30.91857 -30.49640 -27.28497 -25.67490 -24.46710 -23.74611 -22.06695 -20.62528 -19.98601 -19.36813 -18.83321 -17.57666 -17.02621 -16.35407 -16.25597 -15.55353 -15.16133 -14.60450 -14.34684 -13.90586 -13.81110 -13.51674 -13.39453 -13.04287 -12.81032 -12.72486 -12.54837 -12.09548 -11.84905 -11.62821 -11.23323 -11.19845 -11.14998 -10.91435 -10.86475 -10.53155 -10.33226 -10.12047 -9.99772 -9.74954 -9.59918 -9.23455 -9.05360 -8.65579 -7.22604 -5.76578 -3.12878 2.14418 2.65817 3.28052 3.37892 3.40401 3.44559 3.45854 4.13294 4.35145 4.59270 4.59667 4.73038 4.76384 4.88993 4.94913 5.00854 5.12947 5.18423 5.24829 5.31049 5.44158 5.45781 5.51972 5.56947 5.58192 5.64328 5.71216 5.79222 5.81593 5.90432 5.95423 6.07453 6.10560 6.19363 6.28385 6.44281 6.50615 6.76234 7.02200 7.49769 7.99130 8.24107 8.41995 9.20415 9.92311 10.11862 11.41624 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.035722 B = 0.002574 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.651615 B =10875.410516 C =11255.910144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.004 3.996 3 Si 0.886 3.114 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.246 4.246 8 H 0.091 0.909 9 N -0.751 5.751 10 C 0.166 3.834 11 C -0.120 4.120 12 C -0.193 4.193 13 C 0.138 3.862 14 N -0.727 5.727 15 C 0.507 3.493 16 O -0.536 6.536 17 C -0.131 4.131 18 C -0.046 4.046 19 H 0.091 0.909 20 C -0.124 4.124 21 C -0.096 4.096 22 C -0.167 4.167 23 H 0.107 0.893 24 C -0.155 4.155 25 C -0.165 4.165 26 H 0.109 0.891 27 H 0.260 0.740 28 H 0.362 0.638 29 H 0.037 0.963 30 H 0.043 0.957 31 H 0.113 0.887 32 H 0.112 0.888 33 H 0.090 0.910 34 H 0.071 0.929 35 H 0.398 0.602 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.062 0.938 39 H 0.082 0.918 40 H 0.073 0.927 41 H 0.065 0.935 42 H 0.092 0.908 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.115 -18.750 6.454 29.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.191 4.191 3 Si 0.716 3.284 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.376 4.376 8 H 0.109 0.891 9 N -0.397 5.397 10 C 0.040 3.960 11 C -0.139 4.139 12 C -0.212 4.212 13 C 0.016 3.984 14 N -0.379 5.379 15 C 0.293 3.707 16 O -0.412 6.412 17 C -0.171 4.171 18 C -0.064 4.064 19 H 0.109 0.891 20 C -0.161 4.161 21 C -0.134 4.134 22 C -0.185 4.185 23 H 0.125 0.875 24 C -0.192 4.192 25 C -0.183 4.183 26 H 0.127 0.873 27 H 0.070 0.930 28 H 0.194 0.806 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.131 0.869 32 H 0.130 0.870 33 H 0.107 0.893 34 H 0.089 0.911 35 H 0.232 0.768 36 H 0.109 0.891 37 H 0.111 0.889 38 H 0.081 0.919 39 H 0.101 0.899 40 H 0.092 0.908 41 H 0.084 0.916 42 H 0.110 0.890 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 21.120 -18.800 6.990 29.127 hybrid contribution 1.040 1.300 -0.438 1.722 sum 22.161 -17.500 6.552 28.988 Atomic orbital electron populations 1.69704 1.05092 1.25876 1.57372 1.24683 0.95268 0.97264 1.01922 0.86520 0.79246 0.84876 0.77749 1.21046 1.21652 1.20293 1.19073 0.80414 0.94877 1.43228 0.89110 1.42620 1.03959 1.01892 1.91210 1.19973 0.86507 0.89950 0.99560 1.23310 0.96805 0.97789 0.95999 1.22645 1.00136 1.00403 0.98024 1.20562 0.95151 0.83293 0.99405 1.46070 1.31008 1.15109 1.45693 1.20732 0.85847 0.84461 0.79631 1.90720 1.28202 1.82490 1.39797 1.21663 0.99726 0.93478 1.02230 1.21326 0.99589 0.91052 0.94476 0.89110 1.22594 1.02224 0.96972 0.94333 1.21925 0.99868 0.93965 0.97609 1.23152 1.01352 0.99250 0.94740 0.87465 1.22888 0.90499 1.02864 1.02941 1.23181 0.99523 0.99071 0.96501 0.87265 0.93002 0.80555 0.94565 0.93902 0.86949 0.87032 0.89254 0.91124 0.76841 0.89097 0.88869 0.91890 0.89887 0.90830 0.91643 0.88990 0.88525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.76 13.97 55.49 0.78 -28.99 16 2 C 0.00 0.13 5.50 -17.43 -0.10 0.04 16 3 Si 0.89 22.35 27.74 -169.99 -4.71 17.64 16 4 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 5 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 6 H -0.28 -6.58 6.52 56.52 0.37 -6.21 16 7 C -0.25 -7.15 10.47 -15.06 -0.16 -7.31 16 8 H 0.09 2.82 8.06 -52.49 -0.42 2.39 16 9 N -0.75 -18.29 5.40 -61.09 -0.33 -18.62 16 10 C 0.17 3.26 6.35 -5.19 -0.03 3.23 16 11 C -0.12 -1.80 9.63 -36.02 -0.35 -2.15 16 12 C -0.19 -2.43 9.63 -36.02 -0.35 -2.78 16 13 C 0.14 1.88 5.76 -5.19 -0.03 1.85 16 14 N -0.73 -7.84 5.55 -61.47 -0.34 -8.18 16 15 C 0.51 6.07 7.64 -10.98 -0.08 5.98 16 16 O -0.54 -8.73 14.72 5.56 0.08 -8.65 16 17 C -0.13 -1.07 5.23 -27.88 -0.15 -1.21 16 18 C -0.05 -0.42 2.38 -88.96 -0.21 -0.63 16 19 H 0.09 1.00 7.90 -51.92 -0.41 0.59 16 20 C -0.12 -1.17 5.28 -24.74 -0.13 -1.30 16 21 C -0.10 -0.79 6.77 -25.07 -0.17 -0.96 16 22 C -0.17 -1.24 7.06 -89.50 -0.63 -1.87 16 23 H 0.11 0.71 8.14 -51.93 -0.42 0.29 16 24 C -0.16 -1.02 9.83 -26.73 -0.26 -1.28 16 25 C -0.16 -1.23 6.42 -89.50 -0.57 -1.80 16 26 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.26 7.86 8.31 -40.82 -0.34 7.52 16 28 H 0.36 8.53 5.52 -40.82 -0.23 8.30 16 29 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.04 0.87 5.29 -51.93 -0.27 0.59 16 31 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 32 H 0.11 1.13 8.06 -52.49 -0.42 0.71 16 33 H 0.09 1.44 5.30 -51.93 -0.28 1.17 16 34 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 35 H 0.40 3.03 8.46 -40.82 -0.35 2.69 16 36 H 0.09 0.59 8.02 -51.93 -0.42 0.17 16 37 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.55 7.21 -51.93 -0.37 0.18 16 39 H 0.08 0.97 7.28 -51.93 -0.38 0.59 16 40 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.09 0.60 7.21 -51.93 -0.37 0.23 16 43 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 345.86 15.07 5.21 5.21 Total: -1.00 -33.87 345.86 -9.43 -43.30 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: -6.89 Total: 8.46 kcal Atomic # 6 Polarization: -6.97 SS G_CDS: -3.22 Total: -10.19 kcal Atomic # 7 Polarization: -55.89 SS G_CDS: 0.10 Total: -55.78 kcal Atomic # 8 Polarization: -8.73 SS G_CDS: 0.08 Total: -8.65 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -4.71 Total: 17.64 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.87 -9.43 -43.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268557628.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.710 kcal (2) G-P(sol) polarization free energy of solvation -33.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds