Wall clock time and date at job start Tue Mar 31 2020 00:51:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 119.99894 * 2 1 4 4 H 1.48497 * 109.47476 * 270.00082 * 3 2 1 5 5 H 1.48498 * 109.46924 * 30.00545 * 3 2 1 6 6 H 1.48502 * 109.46744 * 150.00033 * 3 2 1 7 7 C 1.38815 * 119.99643 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00256 * 0.02562 * 7 2 1 9 9 N 1.36940 * 119.99500 * 179.97438 * 7 2 1 10 10 C 1.46497 * 119.99570 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.46729 * 180.02562 * 10 9 7 12 12 C 1.31000 * 119.99892 * 127.01090 * 11 10 9 13 13 C 1.50702 * 120.00065 * 7.55089 * 12 11 10 14 14 N 1.46507 * 109.46870 * 127.16133 * 13 12 11 15 15 C 1.34777 * 119.99885 * 180.02562 * 14 13 12 16 16 O 1.21275 * 120.00121 * 359.97438 * 15 14 13 17 17 C 1.50701 * 119.99891 * 179.97438 * 15 14 13 18 18 C 1.53001 * 109.47192 * 180.02562 * 17 15 14 19 19 H 1.09007 * 110.53791 * 52.38755 * 18 17 15 20 20 C 1.54887 * 110.48345 * 289.77437 * 18 17 15 21 21 C 1.54889 * 102.74741 * 203.37767 * 20 18 17 22 22 C 1.54267 * 104.19612 * 37.94323 * 21 20 18 23 23 H 1.08996 * 117.76182 * 196.02888 * 22 21 20 24 24 C 1.53004 * 118.19561 * 40.56823 * 22 21 20 25 25 C 1.52998 * 60.37665 * 266.38283 * 24 22 21 26 26 H 1.08997 * 119.30200 * 248.69228 * 25 24 22 27 27 H 0.96998 * 120.00009 * 359.97438 * 1 2 3 28 28 H 0.96996 * 119.99951 * 0.02562 * 9 7 2 29 29 H 1.09004 * 109.47318 * 60.00403 * 10 9 7 30 30 H 1.08994 * 109.47338 * 299.99939 * 10 9 7 31 31 H 1.07994 * 120.00081 * 307.00396 * 11 10 9 32 32 H 1.07999 * 119.99986 * 187.56174 * 12 11 10 33 33 H 1.08999 * 109.46824 * 7.16704 * 13 12 11 34 34 H 1.08998 * 109.47283 * 247.15880 * 13 12 11 35 35 H 0.96995 * 119.99954 * 359.97438 * 14 13 12 36 36 H 1.08996 * 109.47130 * 59.99607 * 17 15 14 37 37 H 1.09002 * 109.47087 * 300.00326 * 17 15 14 38 38 H 1.09001 * 110.75893 * 321.69712 * 20 18 17 39 39 H 1.09001 * 110.75648 * 84.88425 * 20 18 17 40 40 H 1.09004 * 110.49113 * 279.26526 * 21 20 18 41 41 H 1.08998 * 110.48676 * 156.62304 * 21 20 18 42 42 H 1.08997 * 117.46327 * 13.98495 * 24 22 21 43 43 H 1.09002 * 117.46046 * 158.80606 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4476 2.6526 0.7002 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0014 9 7 3.3796 -1.2022 -0.0011 10 6 4.1120 -2.4709 -0.0011 11 6 5.5937 -2.1955 -0.0011 12 6 6.3624 -2.7473 0.9049 13 6 5.7992 -3.7869 1.8393 14 7 6.6366 -4.9882 1.7950 15 6 6.3230 -6.0566 2.5543 16 8 5.3478 -6.0234 3.2745 17 6 7.1840 -7.2926 2.5083 18 6 6.6116 -8.3485 3.4560 19 1 5.5548 -8.5163 3.2482 20 6 6.8127 -7.9193 4.9306 21 6 6.7663 -9.2692 5.6888 22 6 7.5001 -10.2533 4.7545 23 1 7.3707 -11.3199 4.9380 24 6 8.7589 -9.7647 4.0349 25 6 7.4018 -9.6679 3.3349 26 1 7.1999 -10.3032 2.4726 27 1 -0.4850 0.8400 0.0004 28 1 3.8646 -0.3622 -0.0007 29 1 3.8484 -3.0427 -0.8909 30 1 3.8491 -3.0423 0.8891 31 1 6.0217 -1.5434 -0.7479 32 1 7.3998 -2.4570 0.9822 33 1 4.7845 -4.0398 1.5321 34 1 5.7837 -3.3921 2.8551 35 1 7.4163 -5.0149 1.2186 36 1 8.1989 -7.0400 2.8154 37 1 7.1995 -7.6870 1.4922 38 1 7.7799 -7.4346 5.0634 39 1 6.0055 -7.2628 5.2553 40 1 5.7345 -9.5857 5.8416 41 1 7.2869 -9.1888 6.6430 42 1 9.2106 -8.8370 4.3861 43 1 9.4572 -10.5202 3.6747 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268557628.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:51:09 Heat of formation + Delta-G solvation = -7.326889 kcal Electronic energy + Delta-G solvation = -20725.543514 eV Core-core repulsion = 17578.014638 eV Total energy + Delta-G solvation = -3147.528876 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.26275 -40.03350 -38.05879 -36.16321 -34.42834 -33.37555 -32.73948 -31.25046 -28.55586 -27.03840 -25.47368 -24.35774 -24.05643 -21.59266 -20.65872 -20.50284 -19.89818 -19.14146 -17.96379 -17.54593 -17.09263 -16.67740 -16.44153 -16.04196 -15.53552 -15.31006 -14.92663 -14.57089 -14.47712 -14.31341 -14.19139 -14.00158 -13.46972 -13.39024 -13.06327 -12.75594 -12.66578 -12.27596 -12.21391 -11.94290 -11.88967 -11.80397 -11.66334 -11.57270 -11.08904 -10.93578 -10.89796 -10.45357 -10.27329 -9.93540 -9.28875 -8.06391 -5.41641 1.02744 1.36374 1.41470 1.49111 1.71099 2.40268 2.46445 2.83969 3.24458 3.50072 3.70751 3.74153 3.84070 3.92109 4.00737 4.10859 4.17632 4.29607 4.30755 4.38213 4.49046 4.56119 4.63200 4.70048 4.78653 4.84750 4.88032 4.92271 4.97095 5.05899 5.06814 5.11800 5.30600 5.35219 5.40516 5.44230 5.47615 5.54753 5.68606 5.85809 6.17248 6.63717 7.03439 7.34625 7.77457 7.99285 9.15146 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.035722 B = 0.002574 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.651615 B =10875.410516 C =11255.910144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.066 4.066 3 Si 0.964 3.036 4 H -0.273 1.273 5 H -0.294 1.294 6 H -0.249 1.249 7 C -0.244 4.244 8 H 0.051 0.949 9 N -0.753 5.753 10 C 0.162 3.838 11 C -0.140 4.140 12 C -0.152 4.152 13 C 0.136 3.864 14 N -0.712 5.712 15 C 0.501 3.499 16 O -0.587 6.587 17 C -0.120 4.120 18 C -0.048 4.048 19 H 0.061 0.939 20 C -0.124 4.124 21 C -0.097 4.097 22 C -0.176 4.176 23 H 0.116 0.884 24 C -0.140 4.140 25 C -0.166 4.166 26 H 0.118 0.882 27 H 0.260 0.740 28 H 0.369 0.631 29 H 0.028 0.972 30 H 0.032 0.968 31 H 0.135 0.865 32 H 0.155 0.845 33 H 0.056 0.944 34 H 0.059 0.941 35 H 0.418 0.582 36 H 0.119 0.881 37 H 0.117 0.883 38 H 0.073 0.927 39 H 0.050 0.950 40 H 0.063 0.937 41 H 0.072 0.928 42 H 0.095 0.905 43 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.629 -18.621 6.003 33.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.634 5.634 2 C -0.258 4.258 3 Si 0.790 3.210 4 H -0.198 1.198 5 H -0.221 1.221 6 H -0.174 1.174 7 C -0.375 4.375 8 H 0.069 0.931 9 N -0.399 5.399 10 C 0.037 3.963 11 C -0.160 4.160 12 C -0.171 4.171 13 C 0.013 3.987 14 N -0.365 5.365 15 C 0.289 3.711 16 O -0.468 6.468 17 C -0.159 4.159 18 C -0.067 4.067 19 H 0.080 0.920 20 C -0.161 4.161 21 C -0.135 4.135 22 C -0.194 4.194 23 H 0.134 0.866 24 C -0.176 4.176 25 C -0.184 4.184 26 H 0.136 0.864 27 H 0.068 0.932 28 H 0.203 0.797 29 H 0.046 0.954 30 H 0.050 0.950 31 H 0.153 0.847 32 H 0.173 0.827 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.256 0.744 36 H 0.137 0.863 37 H 0.135 0.865 38 H 0.092 0.908 39 H 0.069 0.931 40 H 0.082 0.918 41 H 0.091 0.909 42 H 0.113 0.887 43 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 25.717 -18.706 6.511 32.460 hybrid contribution -0.411 1.098 -0.234 1.195 sum 25.306 -17.608 6.277 31.462 Atomic orbital electron populations 1.69905 1.07310 1.26962 1.59215 1.25636 0.96277 1.01746 1.02125 0.85281 0.78596 0.78736 0.78390 1.19829 1.22092 1.17373 1.19034 0.82729 0.93520 1.42189 0.93117 1.42599 1.02333 1.03988 1.91020 1.20052 0.89806 0.87864 0.98574 1.23060 0.93698 1.00601 0.98599 1.22852 1.01531 0.97682 0.95078 1.20368 0.94428 0.84876 0.99076 1.45890 1.31084 1.13899 1.45659 1.21513 0.85478 0.85503 0.78570 1.90712 1.30626 1.83419 1.41999 1.21683 0.99846 0.91012 1.03392 1.21253 0.98496 0.92553 0.94402 0.92008 1.22542 1.01437 0.97112 0.95026 1.21905 0.99735 0.93650 0.98187 1.23208 1.02444 0.99431 0.94341 0.86636 1.22986 0.89967 1.03331 1.01343 1.23125 1.00408 0.97961 0.96866 0.86365 0.93151 0.79727 0.95405 0.95034 0.84688 0.82711 0.92557 0.92234 0.74447 0.86279 0.86511 0.90813 0.93115 0.91829 0.90939 0.88652 0.86755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -64.84 13.97 21.65 0.30 -64.54 16 2 C -0.07 -4.04 5.50 84.86 0.47 -3.57 16 3 Si 0.96 46.07 27.74 68.60 1.90 47.97 16 4 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 5 H -0.29 -14.20 7.11 99.48 0.71 -13.49 16 6 H -0.25 -10.68 6.52 99.48 0.65 -10.03 16 7 C -0.24 -14.60 10.47 84.03 0.88 -13.72 16 8 H 0.05 3.35 8.06 -2.91 -0.02 3.33 16 9 N -0.75 -36.59 5.40 -347.17 -1.87 -38.46 16 10 C 0.16 6.40 6.35 85.63 0.54 6.94 16 11 C -0.14 -3.87 9.63 25.65 0.25 -3.62 16 12 C -0.15 -3.33 9.63 25.65 0.25 -3.08 16 13 C 0.14 3.58 5.76 85.63 0.49 4.07 16 14 N -0.71 -13.99 5.55 -466.78 -2.59 -16.58 16 15 C 0.50 11.66 7.64 87.66 0.67 12.33 16 16 O -0.59 -20.03 14.72 -3.01 -0.04 -20.08 16 17 C -0.12 -1.70 5.23 29.85 0.16 -1.54 16 18 C -0.05 -0.85 2.38 -9.72 -0.02 -0.87 16 19 H 0.06 1.44 7.90 -2.38 -0.02 1.42 16 20 C -0.12 -2.35 5.28 31.88 0.17 -2.18 16 21 C -0.10 -1.58 6.77 31.67 0.21 -1.36 16 22 C -0.18 -2.33 7.06 -10.07 -0.07 -2.40 16 23 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 24 C -0.14 -1.39 9.83 30.60 0.30 -1.09 16 25 C -0.17 -2.14 6.42 -10.07 -0.06 -2.20 16 26 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.26 16.17 8.31 -92.71 -0.77 15.40 16 28 H 0.37 16.67 5.52 -92.71 -0.51 16.16 16 29 H 0.03 1.14 8.14 -2.38 -0.02 1.12 16 30 H 0.03 1.33 5.29 -2.39 -0.01 1.32 16 31 H 0.14 3.18 8.06 -2.91 -0.02 3.16 16 32 H 0.16 2.21 8.06 -2.91 -0.02 2.19 16 33 H 0.06 1.89 5.30 -2.39 -0.01 1.87 16 34 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.42 4.83 8.46 -92.71 -0.78 4.04 16 36 H 0.12 1.07 8.02 -2.39 -0.02 1.05 16 37 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.07 1.21 7.21 -2.39 -0.02 1.19 16 39 H 0.05 1.28 7.28 -2.39 -0.02 1.27 16 40 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 41 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.10 0.91 7.21 -2.39 -0.02 0.89 16 43 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 Total: -1.00 -78.08 345.86 1.58 -76.50 By element: Atomic # 1 Polarization: 27.81 SS G_CDS: -0.35 Total: 27.46 kcal Atomic # 6 Polarization: -16.51 SS G_CDS: 4.23 Total: -12.28 kcal Atomic # 7 Polarization: -115.42 SS G_CDS: -4.16 Total: -119.58 kcal Atomic # 8 Polarization: -20.03 SS G_CDS: -0.04 Total: -20.08 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 1.90 Total: 47.97 kcal Total: -78.08 1.58 -76.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268557628.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.178 kcal (2) G-P(sol) polarization free energy of solvation -78.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds