Wall clock time and date at job start Tue Mar 31 2020 00:49:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86805 * 119.99609 * 2 1 4 4 H 1.48504 * 109.46625 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47153 * 300.00650 * 3 2 1 6 6 H 1.48497 * 109.46791 * 60.00545 * 3 2 1 7 7 C 1.38806 * 120.00141 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00222 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00116 * 359.97438 * 7 2 1 10 10 C 1.46506 * 119.99879 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.46755 * 179.97438 * 10 9 7 12 12 C 1.31008 * 119.99571 * 125.00398 * 11 10 9 13 13 C 1.50690 * 119.99955 * 179.97438 * 12 11 10 14 14 N 1.46506 * 109.47072 * 124.99822 * 13 12 11 15 15 C 1.34773 * 119.99968 * 179.97438 * 14 13 12 16 16 O 1.21283 * 120.00360 * 359.73034 * 15 14 13 17 17 C 1.50706 * 120.00081 * 180.02562 * 15 14 13 18 18 H 1.08994 * 109.61590 * 60.08767 * 17 15 14 19 19 C 1.53302 * 109.61654 * 299.72746 * 17 15 14 20 20 C 1.52866 * 108.59068 * 165.82610 * 19 17 15 21 21 C 1.52076 * 110.51241 * 54.88914 * 20 19 17 22 22 H 1.09009 * 114.63724 * 193.15389 * 21 20 19 23 23 C 1.52304 * 119.83982 * 49.55486 * 21 20 19 24 24 C 1.52065 * 120.02295 * 338.30036 * 21 20 19 25 25 H 1.09005 * 117.25649 * 215.56694 * 24 21 20 26 26 C 1.52715 * 120.52025 * 5.28769 * 24 21 20 27 27 H 0.96995 * 120.00367 * 359.97438 * 1 2 3 28 28 H 0.96993 * 119.99996 * 0.02562 * 9 7 2 29 29 H 1.09003 * 109.46987 * 60.00597 * 10 9 7 30 30 H 1.08992 * 109.47461 * 300.00654 * 10 9 7 31 31 H 1.07998 * 120.00674 * 305.00500 * 11 10 9 32 32 H 1.07998 * 119.99754 * 0.02562 * 12 11 10 33 33 H 1.09004 * 109.47343 * 5.00372 * 13 12 11 34 34 H 1.08998 * 109.47656 * 245.00230 * 13 12 11 35 35 H 0.96998 * 119.99507 * 0.02562 * 14 13 12 36 36 H 1.09000 * 109.61525 * 285.56055 * 19 17 15 37 37 H 1.09000 * 109.61761 * 45.91418 * 19 17 15 38 38 H 1.08999 * 109.26989 * 175.15298 * 20 19 17 39 39 H 1.09002 * 109.26839 * 294.62145 * 20 19 17 40 40 H 1.08996 * 117.53857 * 357.55353 * 23 21 20 41 41 H 1.08996 * 117.53801 * 142.80634 * 23 21 20 42 42 H 1.09000 * 109.35679 * 218.31668 * 26 24 21 43 43 H 1.08997 * 109.35285 * 98.74059 * 26 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8912 2.3966 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0582 -3.6568 -0.0005 11 6 1.0790 -4.8022 0.0001 12 6 1.1477 -5.7232 -0.9291 13 6 0.1689 -6.8689 -0.9282 14 7 -0.5083 -6.9336 -2.2257 15 6 -1.4328 -7.8867 -2.4565 16 8 -1.7007 -8.6939 -1.5918 17 6 -2.1291 -7.9537 -3.7914 18 1 -1.3933 -8.1081 -4.5806 19 6 -2.8867 -6.6449 -4.0430 20 6 -3.2815 -6.5862 -5.5186 21 6 -4.0685 -7.8274 -5.9095 22 1 -4.1909 -7.9684 -6.9834 23 6 -5.2466 -8.2777 -5.0557 24 6 -3.9471 -9.0972 -5.0817 25 1 -3.9859 -10.0468 -5.6156 26 6 -3.1341 -9.1056 -3.7890 27 1 -0.4850 0.8400 0.0004 28 1 0.3557 -2.3881 -0.0005 29 1 2.6848 -3.7145 0.8895 30 1 2.6850 -3.7145 -0.8904 31 1 0.3205 -4.8639 0.7665 32 1 1.9064 -5.6617 -1.6952 33 1 -0.5690 -6.7158 -0.1406 34 1 0.7023 -7.8025 -0.7498 35 1 -0.2907 -6.2909 -2.9189 36 1 -3.7827 -6.6157 -3.4229 37 1 -2.2452 -5.7980 -3.7991 38 1 -3.8949 -5.7020 -5.6920 39 1 -2.3810 -6.5240 -6.1297 40 1 -5.4634 -7.7052 -4.1539 41 1 -6.1135 -8.6913 -5.5710 42 1 -2.5993 -10.0516 -3.7047 43 1 -3.8069 -8.9963 -2.9384 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268558326.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:49:14 Heat of formation + Delta-G solvation = -24.213230 kcal Electronic energy + Delta-G solvation = -20800.131188 eV Core-core repulsion = 17651.870065 eV Total energy + Delta-G solvation = -3148.261123 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.43117 -39.66881 -37.67627 -36.23548 -34.65281 -33.99491 -32.32330 -31.75082 -28.83276 -26.48160 -25.42605 -24.43119 -23.43364 -22.02362 -21.56837 -20.66437 -19.42606 -19.11169 -18.25971 -17.16500 -16.97294 -16.63865 -16.37314 -15.74614 -15.33114 -15.14738 -14.92865 -14.82290 -14.69369 -14.31100 -14.05308 -13.60054 -13.50304 -13.29493 -13.07885 -12.88998 -12.75817 -12.41196 -12.21512 -12.15499 -11.99734 -11.94826 -11.78138 -11.53798 -11.07917 -10.86356 -10.64922 -10.56068 -10.31951 -9.96900 -9.01906 -7.96507 -5.26511 1.05345 1.48463 1.49200 1.59470 1.60167 2.35339 2.56771 2.84841 3.37522 3.58593 3.72057 3.75526 3.78883 3.99775 4.02009 4.08550 4.17929 4.22906 4.28036 4.44252 4.46194 4.56998 4.64340 4.68638 4.72395 4.78215 4.91882 4.92878 5.00075 5.04176 5.13384 5.18371 5.25738 5.34064 5.35150 5.36436 5.41602 5.47654 5.65323 5.82920 6.25709 6.53040 7.21232 7.31779 8.05598 8.29650 9.27150 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.020925 B = 0.002866 C = 0.002596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.772516 B = 9767.655184 C =10781.866403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.076 4.076 3 Si 0.976 3.024 4 H -0.265 1.265 5 H -0.291 1.291 6 H -0.294 1.294 7 C -0.248 4.248 8 H 0.078 0.922 9 N -0.745 5.745 10 C 0.174 3.826 11 C -0.133 4.133 12 C -0.160 4.160 13 C 0.156 3.844 14 N -0.716 5.716 15 C 0.513 3.487 16 O -0.586 6.586 17 C -0.096 4.096 18 H 0.122 0.878 19 C -0.114 4.114 20 C -0.087 4.087 21 C -0.134 4.134 22 H 0.113 0.887 23 C -0.192 4.192 24 C -0.150 4.150 25 H 0.114 0.886 26 C -0.066 4.066 27 H 0.252 0.748 28 H 0.374 0.626 29 H 0.030 0.970 30 H 0.034 0.966 31 H 0.106 0.894 32 H 0.132 0.868 33 H 0.056 0.944 34 H 0.078 0.922 35 H 0.414 0.586 36 H 0.056 0.944 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.102 0.898 42 H 0.067 0.933 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.507 -18.590 -13.687 23.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.268 4.268 3 Si 0.805 3.195 4 H -0.189 1.189 5 H -0.218 1.218 6 H -0.221 1.221 7 C -0.379 4.379 8 H 0.096 0.904 9 N -0.387 5.387 10 C 0.048 3.952 11 C -0.152 4.152 12 C -0.179 4.179 13 C 0.033 3.967 14 N -0.368 5.368 15 C 0.301 3.699 16 O -0.466 6.466 17 C -0.117 4.117 18 H 0.140 0.860 19 C -0.152 4.152 20 C -0.124 4.124 21 C -0.152 4.152 22 H 0.131 0.869 23 C -0.229 4.229 24 C -0.168 4.168 25 H 0.132 0.868 26 C -0.104 4.104 27 H 0.061 0.939 28 H 0.206 0.794 29 H 0.048 0.952 30 H 0.052 0.948 31 H 0.124 0.876 32 H 0.149 0.851 33 H 0.074 0.926 34 H 0.096 0.904 35 H 0.251 0.749 36 H 0.075 0.925 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.105 0.895 40 H 0.102 0.898 41 H 0.120 0.880 42 H 0.086 0.914 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.509 -19.065 -13.058 23.756 hybrid contribution -0.059 1.254 0.235 1.277 sum -5.568 -17.811 -12.822 22.642 Atomic orbital electron populations 1.69829 1.06679 1.26121 1.59369 1.25616 0.96449 1.01242 1.03521 0.85040 0.78257 0.79536 0.76709 1.18899 1.21832 1.22081 1.19704 0.91627 0.85184 1.41399 0.90374 1.42545 1.05711 1.00950 1.89534 1.19909 0.93134 0.83653 0.98515 1.23005 0.98839 0.94350 0.99003 1.22775 1.00012 0.95405 0.99739 1.20218 0.93545 0.97424 0.85519 1.46009 1.40699 1.33270 1.16780 1.21225 0.78839 0.79647 0.90211 1.90673 1.65541 1.42017 1.48415 1.21358 0.98468 0.98164 0.93705 0.85970 1.21636 1.00027 0.95326 0.98182 1.20878 1.00470 0.96517 0.94510 1.21936 1.00331 0.94730 0.98195 0.86854 1.23200 0.92469 1.04497 1.02737 1.22240 0.99662 0.96470 0.98472 0.86782 1.20761 0.96408 0.97401 0.95863 0.93934 0.79411 0.95244 0.94772 0.87629 0.85060 0.92551 0.90374 0.74913 0.92510 0.90598 0.90610 0.89532 0.89798 0.87976 0.91437 0.92854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.17 13.06 21.65 0.28 -58.89 16 2 C -0.08 -4.35 5.50 84.86 0.47 -3.88 16 3 Si 0.98 45.64 29.55 68.60 2.03 47.67 16 4 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 5 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 6 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 7 C -0.25 -13.77 9.99 84.03 0.84 -12.93 16 8 H 0.08 4.15 7.83 -2.91 -0.02 4.12 16 9 N -0.74 -37.86 5.59 -347.17 -1.94 -39.80 16 10 C 0.17 6.78 6.70 85.63 0.57 7.36 16 11 C -0.13 -4.18 9.24 25.64 0.24 -3.94 16 12 C -0.16 -4.01 9.24 25.64 0.24 -3.77 16 13 C 0.16 3.77 6.11 85.63 0.52 4.29 16 14 N -0.72 -15.44 5.34 -466.79 -2.49 -17.93 16 15 C 0.51 12.38 7.16 87.66 0.63 13.01 16 16 O -0.59 -19.01 15.92 -3.04 -0.05 -19.06 16 17 C -0.10 -1.67 2.50 -11.48 -0.03 -1.70 16 18 H 0.12 1.62 8.04 -2.39 -0.02 1.60 16 19 C -0.11 -1.85 5.02 30.65 0.15 -1.70 16 20 C -0.09 -1.10 5.93 30.24 0.18 -0.92 16 21 C -0.13 -1.70 6.00 -11.64 -0.07 -1.77 16 22 H 0.11 1.14 8.14 -2.38 -0.02 1.12 16 23 C -0.19 -2.77 9.66 30.58 0.30 -2.47 16 24 C -0.15 -2.17 6.19 -10.98 -0.07 -2.24 16 25 H 0.11 1.39 8.14 -2.38 -0.02 1.37 16 26 C -0.07 -1.24 4.48 30.46 0.14 -1.10 16 27 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 28 H 0.37 20.30 7.66 -92.71 -0.71 19.59 16 29 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.03 1.28 7.79 -2.39 -0.02 1.27 16 31 H 0.11 3.39 7.84 -2.91 -0.02 3.37 16 32 H 0.13 2.91 7.84 -2.91 -0.02 2.89 16 33 H 0.06 1.54 7.79 -2.39 -0.02 1.52 16 34 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.41 7.14 7.83 -92.71 -0.73 6.41 16 36 H 0.06 1.09 7.11 -2.39 -0.02 1.07 16 37 H 0.08 1.22 7.28 -2.39 -0.02 1.20 16 38 H 0.08 0.95 8.14 -2.39 -0.02 0.94 16 39 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.08 1.40 7.26 -2.39 -0.02 1.39 16 41 H 0.10 1.23 8.14 -2.39 -0.02 1.22 16 42 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 43 H 0.05 1.22 7.85 -2.39 -0.02 1.20 16 Total: -1.00 -68.60 350.10 1.49 -67.10 By element: Atomic # 1 Polarization: 33.12 SS G_CDS: -0.44 Total: 32.68 kcal Atomic # 6 Polarization: -15.88 SS G_CDS: 4.10 Total: -11.77 kcal Atomic # 7 Polarization: -112.48 SS G_CDS: -4.15 Total: -116.63 kcal Atomic # 8 Polarization: -19.01 SS G_CDS: -0.05 Total: -19.06 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal Total: -68.60 1.49 -67.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268558326.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.891 kcal (2) G-P(sol) polarization free energy of solvation -68.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds