Wall clock time and date at job start Tue Mar 31 2020 00:04:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86793 * 120.00314 * 2 1 4 4 H 1.48503 * 109.47394 * 270.00282 * 3 2 1 5 5 H 1.48497 * 109.47138 * 30.00201 * 3 2 1 6 6 H 1.48503 * 109.47444 * 150.00487 * 3 2 1 7 7 C 1.38819 * 119.99625 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99800 * 359.97438 * 7 2 1 9 9 N 1.36932 * 119.99774 * 179.97438 * 7 2 1 10 10 C 1.46500 * 120.00045 * 175.11624 * 9 7 2 11 11 C 1.53000 * 115.54869 * 304.22682 * 10 9 7 12 12 N 1.46505 * 109.47264 * 329.38990 * 11 10 9 13 13 C 1.34777 * 120.00125 * 174.82392 * 12 11 10 14 14 O 1.21609 * 120.00120 * 359.97438 * 13 12 11 15 15 C 1.47106 * 119.99682 * 179.97438 * 13 12 11 16 16 C 1.32997 * 119.99794 * 187.00860 * 15 13 12 17 17 C 1.51269 * 120.84783 * 11.86379 * 16 15 13 18 18 C 1.53665 * 108.30948 * 128.62123 * 17 16 15 19 19 C 1.52954 * 109.32526 * 54.85786 * 18 17 16 20 20 C 1.52964 * 109.81776 * 296.27519 * 19 18 17 21 21 C 1.51269 * 120.85001 * 192.14605 * 16 15 13 22 22 C 1.52995 * 117.50349 * 158.55625 * 10 9 7 23 23 C 1.52999 * 117.50200 * 89.89506 * 10 9 7 24 24 H 0.97002 * 119.99772 * 0.02562 * 1 2 3 25 25 H 0.97005 * 120.00492 * 354.84058 * 9 7 2 26 26 H 1.09005 * 109.47182 * 89.38806 * 11 10 9 27 27 H 1.09000 * 109.47550 * 209.39441 * 11 10 9 28 28 H 0.96997 * 119.99907 * 354.82364 * 12 11 10 29 29 H 1.07994 * 120.00016 * 7.00964 * 15 13 12 30 30 H 1.09002 * 109.62564 * 248.39011 * 17 16 15 31 31 H 1.09000 * 109.62900 * 8.96421 * 17 16 15 32 32 H 1.09005 * 109.62320 * 294.83734 * 18 17 16 33 33 H 1.09001 * 109.41474 * 174.75416 * 18 17 16 34 34 H 1.08997 * 109.41384 * 176.17225 * 19 18 17 35 35 H 1.08997 * 109.41340 * 56.38134 * 19 18 17 36 36 H 1.09003 * 109.47952 * 303.61814 * 20 19 18 37 37 H 1.09002 * 109.47680 * 183.57826 * 20 19 18 38 38 H 1.08996 * 109.62231 * 351.03844 * 21 16 15 39 39 H 1.09004 * 109.62298 * 111.61189 * 21 16 15 40 40 H 1.09005 * 117.49891 * 0.02562 * 22 10 9 41 41 H 1.08997 * 117.50136 * 145.01505 * 22 10 9 42 42 H 1.09001 * 117.49831 * 214.98151 * 23 10 9 43 43 H 1.09004 * 117.49356 * 359.97438 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4400 0.6999 7 6 2.0102 -1.2023 -0.0005 8 1 1.4701 -2.1375 -0.0005 9 7 3.3795 -1.2023 -0.0011 10 6 4.1120 -2.4664 0.1064 11 6 3.7700 -3.3257 1.3252 12 7 3.3787 -2.4589 2.4396 13 6 2.9325 -3.0006 3.5903 14 8 2.8543 -4.2089 3.7033 15 6 2.5402 -2.1301 4.7094 16 6 2.2335 -2.6616 5.8893 17 6 2.5323 -4.1143 6.1869 18 6 3.3024 -4.1865 7.5147 19 6 2.5008 -3.4725 8.6042 20 6 2.3710 -1.9870 8.2632 21 6 1.5711 -1.8305 6.9658 22 6 5.5590 -2.4890 -0.3902 23 6 4.4626 -3.1926 -1.1939 24 1 -0.4850 0.8401 -0.0004 25 1 3.8646 -0.3656 -0.0766 26 1 2.9455 -3.9946 1.0784 27 1 4.6419 -3.9139 1.6114 28 1 3.4408 -1.4951 2.3493 29 1 2.5013 -1.0595 4.5728 30 1 1.5986 -4.6703 6.2712 31 1 3.1408 -4.5344 5.3861 32 1 4.2730 -3.7034 7.4017 33 1 3.4460 -5.2303 7.7939 34 1 3.0124 -3.5813 9.5605 35 1 1.5077 -3.9165 8.6732 36 1 3.3636 -1.5560 8.1326 37 1 1.8544 -1.4720 9.0732 38 1 1.5618 -0.7828 6.6655 39 1 0.5500 -2.1790 7.1209 40 1 5.9662 -1.5631 -0.7965 41 1 6.2672 -3.1162 0.1512 42 1 4.4500 -4.2824 -1.1809 43 1 4.1478 -2.7299 -2.1293 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269384253.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:04 Heat of formation + Delta-G solvation = 8.304431 kcal Electronic energy + Delta-G solvation = -21923.276571 eV Core-core repulsion = 18776.425520 eV Total energy + Delta-G solvation = -3146.851051 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.60867 -38.15310 -37.30599 -33.55611 -33.13985 -32.51982 -30.91178 -30.40578 -27.72179 -25.53636 -23.62357 -22.89484 -21.98633 -21.44325 -20.02078 -19.30206 -18.20159 -17.71289 -16.43817 -16.02503 -15.23589 -14.76288 -14.56922 -14.32246 -14.26867 -13.99369 -13.69181 -13.38999 -13.12428 -12.74198 -12.58593 -12.37567 -12.27727 -12.14292 -11.75506 -11.21087 -11.12072 -11.07190 -11.01516 -10.91485 -10.66303 -10.43676 -10.33792 -10.26776 -9.67406 -9.53725 -9.03585 -8.86930 -8.69947 -8.24493 -7.41473 -5.86806 -3.26260 1.68502 3.25759 3.29884 3.36754 3.73216 3.86428 4.36252 4.46791 4.72635 4.77355 4.88043 4.93110 5.09035 5.19629 5.20948 5.37477 5.42054 5.42881 5.44969 5.60113 5.61058 5.66777 5.81717 5.86845 5.95178 5.98037 6.01194 6.04344 6.09441 6.16287 6.27975 6.31331 6.37826 6.42590 6.46420 6.66375 6.74591 6.89245 7.17760 7.90593 8.22925 8.32213 8.85320 9.07696 9.78359 9.96097 11.30584 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.016839 B = 0.004909 C = 0.004119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.382967 B = 5701.923412 C = 6795.589490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.011 3.989 3 Si 0.877 3.123 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.276 1.276 7 C -0.243 4.243 8 H 0.092 0.908 9 N -0.713 5.713 10 C 0.137 3.863 11 C 0.157 3.843 12 N -0.692 5.692 13 C 0.546 3.454 14 O -0.559 6.559 15 C -0.215 4.215 16 C -0.036 4.036 17 C -0.120 4.120 18 C -0.116 4.116 19 C -0.123 4.123 20 C -0.116 4.116 21 C -0.092 4.092 22 C -0.191 4.191 23 C -0.194 4.194 24 H 0.261 0.739 25 H 0.365 0.635 26 H 0.068 0.932 27 H 0.059 0.941 28 H 0.409 0.591 29 H 0.124 0.876 30 H 0.072 0.928 31 H 0.124 0.876 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.058 0.942 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.073 0.927 39 H 0.082 0.918 40 H 0.088 0.912 41 H 0.091 0.909 42 H 0.086 0.914 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.721 -4.276 12.914 16.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.185 4.185 3 Si 0.707 3.293 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.202 1.202 7 C -0.373 4.373 8 H 0.110 0.890 9 N -0.354 5.354 10 C 0.044 3.956 11 C 0.031 3.969 12 N -0.342 5.342 13 C 0.335 3.665 14 O -0.442 6.442 15 C -0.236 4.236 16 C -0.038 4.038 17 C -0.156 4.156 18 C -0.154 4.154 19 C -0.160 4.160 20 C -0.153 4.153 21 C -0.129 4.129 22 C -0.229 4.229 23 C -0.235 4.235 24 H 0.071 0.929 25 H 0.199 0.801 26 H 0.087 0.913 27 H 0.077 0.923 28 H 0.246 0.754 29 H 0.142 0.858 30 H 0.090 0.910 31 H 0.141 0.859 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.092 0.908 39 H 0.100 0.900 40 H 0.107 0.893 41 H 0.109 0.891 42 H 0.104 0.896 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 8.395 -5.113 12.976 16.278 hybrid contribution 0.423 1.951 -0.331 2.024 sum 8.818 -3.161 12.645 15.737 Atomic orbital electron populations 1.69694 1.05062 1.25878 1.56527 1.24670 0.95163 0.96951 1.01728 0.86678 0.79251 0.85368 0.77980 1.21039 1.21600 1.20182 1.18967 0.79788 0.94806 1.43717 0.88986 1.42188 1.04002 1.01088 1.88172 1.20145 0.92440 0.90191 0.92820 1.20955 0.99241 0.91848 0.84896 1.45682 1.64304 1.11452 1.12746 1.18451 0.76929 0.87837 0.83237 1.90536 1.56555 1.15180 1.81907 1.22389 1.07761 0.99871 0.93588 1.22565 0.91402 0.96527 0.93318 1.21664 1.02072 0.92885 0.98967 1.21672 0.98812 1.00115 0.94757 1.21559 1.00642 0.95514 0.98294 1.21564 1.00434 0.96682 0.96663 1.20936 0.98998 0.99419 0.93572 1.23247 0.91761 1.02684 1.05163 1.23449 1.03277 0.98752 0.98054 0.92905 0.80077 0.91327 0.92251 0.75378 0.85784 0.91000 0.85892 0.92220 0.91903 0.92308 0.91948 0.91856 0.91834 0.90817 0.89981 0.89336 0.89055 0.89564 0.88702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.92 13.97 55.49 0.78 -27.15 16 2 C 0.01 0.31 5.50 -17.43 -0.10 0.22 16 3 Si 0.88 20.65 27.68 -169.99 -4.71 15.95 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -5.97 6.60 56.52 0.37 -5.60 16 7 C -0.24 -6.40 9.52 -15.06 -0.14 -6.55 16 8 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 9 N -0.71 -15.53 4.29 -47.24 -0.20 -15.74 16 10 C 0.14 2.52 2.62 -131.82 -0.35 2.17 16 11 C 0.16 2.87 5.58 -4.04 -0.02 2.85 16 12 N -0.69 -12.99 5.03 -61.49 -0.31 -13.30 16 13 C 0.55 10.25 7.62 -12.66 -0.10 10.15 16 14 O -0.56 -11.42 13.20 5.27 0.07 -11.35 16 15 C -0.22 -3.47 9.66 -37.80 -0.37 -3.84 16 16 C -0.04 -0.51 5.38 -100.61 -0.54 -1.05 16 17 C -0.12 -1.66 5.33 -27.26 -0.15 -1.81 16 18 C -0.12 -1.28 5.95 -26.41 -0.16 -1.43 16 19 C -0.12 -1.16 5.81 -26.77 -0.16 -1.32 16 20 C -0.12 -1.11 5.94 -26.63 -0.16 -1.27 16 21 C -0.09 -1.05 6.04 -27.49 -0.17 -1.21 16 22 C -0.19 -2.86 10.10 -26.70 -0.27 -3.13 16 23 C -0.19 -3.20 10.18 -26.70 -0.27 -3.47 16 24 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 25 H 0.37 7.79 5.94 -40.82 -0.24 7.55 16 26 H 0.07 1.39 8.13 -51.93 -0.42 0.96 16 27 H 0.06 0.98 7.88 -51.93 -0.41 0.57 16 28 H 0.41 7.79 7.44 -40.82 -0.30 7.48 16 29 H 0.12 1.86 7.96 -52.49 -0.42 1.44 16 30 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.12 2.03 4.77 -52.99 -0.25 1.78 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.81 7.92 -51.93 -0.41 0.39 16 39 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 40 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 41 H 0.09 1.19 8.03 -51.93 -0.42 0.77 16 42 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 43 H 0.09 1.66 8.14 -51.93 -0.42 1.24 16 LS Contribution 344.21 15.07 5.19 5.19 Total: -1.00 -30.03 344.21 -9.23 -39.26 By element: Atomic # 1 Polarization: 23.95 SS G_CDS: -7.11 Total: 16.83 kcal Atomic # 6 Polarization: -6.76 SS G_CDS: -2.93 Total: -9.69 kcal Atomic # 7 Polarization: -56.45 SS G_CDS: 0.26 Total: -56.18 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: 0.07 Total: -11.35 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -4.71 Total: 15.95 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.03 -9.23 -39.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269384253.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.563 kcal (2) G-P(sol) polarization free energy of solvation -30.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds