Wall clock time and date at job start Tue Mar 31 2020 00:04:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86793 * 120.00314 * 2 1 4 4 H 1.48503 * 109.47394 * 270.00282 * 3 2 1 5 5 H 1.48497 * 109.47138 * 30.00201 * 3 2 1 6 6 H 1.48503 * 109.47444 * 150.00487 * 3 2 1 7 7 C 1.38819 * 119.99625 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99800 * 359.97438 * 7 2 1 9 9 N 1.36932 * 119.99774 * 179.97438 * 7 2 1 10 10 C 1.46500 * 120.00045 * 175.11624 * 9 7 2 11 11 C 1.53000 * 115.54869 * 304.22682 * 10 9 7 12 12 N 1.46505 * 109.47264 * 329.38990 * 11 10 9 13 13 C 1.34777 * 120.00125 * 174.82392 * 12 11 10 14 14 O 1.21609 * 120.00120 * 359.97438 * 13 12 11 15 15 C 1.47106 * 119.99682 * 179.97438 * 13 12 11 16 16 C 1.32997 * 119.99794 * 187.00860 * 15 13 12 17 17 C 1.51269 * 120.84783 * 11.86379 * 16 15 13 18 18 C 1.53665 * 108.30948 * 128.62123 * 17 16 15 19 19 C 1.52954 * 109.32526 * 54.85786 * 18 17 16 20 20 C 1.52964 * 109.81776 * 296.27519 * 19 18 17 21 21 C 1.51269 * 120.85001 * 192.14605 * 16 15 13 22 22 C 1.52995 * 117.50349 * 158.55625 * 10 9 7 23 23 C 1.52999 * 117.50200 * 89.89506 * 10 9 7 24 24 H 0.97002 * 119.99772 * 0.02562 * 1 2 3 25 25 H 0.97005 * 120.00492 * 354.84058 * 9 7 2 26 26 H 1.09005 * 109.47182 * 89.38806 * 11 10 9 27 27 H 1.09000 * 109.47550 * 209.39441 * 11 10 9 28 28 H 0.96997 * 119.99907 * 354.82364 * 12 11 10 29 29 H 1.07994 * 120.00016 * 7.00964 * 15 13 12 30 30 H 1.09002 * 109.62564 * 248.39011 * 17 16 15 31 31 H 1.09000 * 109.62900 * 8.96421 * 17 16 15 32 32 H 1.09005 * 109.62320 * 294.83734 * 18 17 16 33 33 H 1.09001 * 109.41474 * 174.75416 * 18 17 16 34 34 H 1.08997 * 109.41384 * 176.17225 * 19 18 17 35 35 H 1.08997 * 109.41340 * 56.38134 * 19 18 17 36 36 H 1.09003 * 109.47952 * 303.61814 * 20 19 18 37 37 H 1.09002 * 109.47680 * 183.57826 * 20 19 18 38 38 H 1.08996 * 109.62231 * 351.03844 * 21 16 15 39 39 H 1.09004 * 109.62298 * 111.61189 * 21 16 15 40 40 H 1.09005 * 117.49891 * 0.02562 * 22 10 9 41 41 H 1.08997 * 117.50136 * 145.01505 * 22 10 9 42 42 H 1.09001 * 117.49831 * 214.98151 * 23 10 9 43 43 H 1.09004 * 117.49356 * 359.97438 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4400 0.6999 7 6 2.0102 -1.2023 -0.0005 8 1 1.4701 -2.1375 -0.0005 9 7 3.3795 -1.2023 -0.0011 10 6 4.1120 -2.4664 0.1064 11 6 3.7700 -3.3257 1.3252 12 7 3.3787 -2.4589 2.4396 13 6 2.9325 -3.0006 3.5903 14 8 2.8543 -4.2089 3.7033 15 6 2.5402 -2.1301 4.7094 16 6 2.2335 -2.6616 5.8893 17 6 2.5323 -4.1143 6.1869 18 6 3.3024 -4.1865 7.5147 19 6 2.5008 -3.4725 8.6042 20 6 2.3710 -1.9870 8.2632 21 6 1.5711 -1.8305 6.9658 22 6 5.5590 -2.4890 -0.3902 23 6 4.4626 -3.1926 -1.1939 24 1 -0.4850 0.8401 -0.0004 25 1 3.8646 -0.3656 -0.0766 26 1 2.9455 -3.9946 1.0784 27 1 4.6419 -3.9139 1.6114 28 1 3.4408 -1.4951 2.3493 29 1 2.5013 -1.0595 4.5728 30 1 1.5986 -4.6703 6.2712 31 1 3.1408 -4.5344 5.3861 32 1 4.2730 -3.7034 7.4017 33 1 3.4460 -5.2303 7.7939 34 1 3.0124 -3.5813 9.5605 35 1 1.5077 -3.9165 8.6732 36 1 3.3636 -1.5560 8.1326 37 1 1.8544 -1.4720 9.0732 38 1 1.5618 -0.7828 6.6655 39 1 0.5500 -2.1790 7.1209 40 1 5.9662 -1.5631 -0.7965 41 1 6.2672 -3.1162 0.1512 42 1 4.4500 -4.2824 -1.1809 43 1 4.1478 -2.7299 -2.1293 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269384253.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:04 Heat of formation + Delta-G solvation = -10.055547 kcal Electronic energy + Delta-G solvation = -21924.072719 eV Core-core repulsion = 18776.425520 eV Total energy + Delta-G solvation = -3147.647199 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.98594 -39.42658 -38.56591 -35.07666 -35.02142 -33.59715 -32.35884 -31.84943 -28.99920 -26.78033 -25.61514 -23.83206 -23.26901 -22.53554 -21.26941 -20.76203 -19.72042 -19.44513 -17.80865 -17.45898 -16.48237 -16.33126 -15.96074 -15.77990 -15.50031 -15.15594 -14.83837 -14.67952 -14.47489 -14.38054 -14.02999 -13.77590 -13.52518 -13.19794 -13.01543 -12.93401 -12.74913 -12.27883 -12.11845 -11.99552 -11.97504 -11.79013 -11.77888 -11.59760 -11.16933 -11.04012 -10.71784 -10.34736 -9.95971 -9.69066 -9.29259 -7.99976 -5.37123 0.43432 1.39035 1.42197 1.49853 2.31145 2.47479 2.48626 2.99110 3.34112 3.35993 3.75559 3.80747 3.83991 4.06567 4.07991 4.13019 4.23542 4.34083 4.37104 4.48693 4.51559 4.65548 4.70137 4.80990 4.81663 4.83819 4.95802 5.01903 5.04538 5.11354 5.16713 5.18937 5.20096 5.34082 5.36852 5.46295 5.59197 5.66959 5.79244 5.84174 6.22529 6.75337 7.07088 7.38365 7.79297 8.00136 9.21305 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.016839 B = 0.004909 C = 0.004119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.382967 B = 5701.923412 C = 6795.589490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.982 5.982 2 C -0.056 4.056 3 Si 0.951 3.049 4 H -0.284 1.284 5 H -0.299 1.299 6 H -0.241 1.241 7 C -0.215 4.215 8 H 0.046 0.954 9 N -0.713 5.713 10 C 0.101 3.899 11 C 0.162 3.838 12 N -0.696 5.696 13 C 0.537 3.463 14 O -0.584 6.584 15 C -0.247 4.247 16 C -0.017 4.017 17 C -0.123 4.123 18 C -0.111 4.111 19 C -0.121 4.121 20 C -0.112 4.112 21 C -0.094 4.094 22 C -0.151 4.151 23 C -0.195 4.195 24 H 0.257 0.743 25 H 0.371 0.629 26 H 0.036 0.964 27 H 0.081 0.919 28 H 0.408 0.592 29 H 0.132 0.868 30 H 0.069 0.931 31 H 0.096 0.904 32 H 0.058 0.942 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.085 0.915 38 H 0.079 0.921 39 H 0.090 0.910 40 H 0.100 0.900 41 H 0.121 0.879 42 H 0.102 0.898 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.206 -3.518 14.574 18.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.632 5.632 2 C -0.248 4.248 3 Si 0.778 3.222 4 H -0.211 1.211 5 H -0.226 1.226 6 H -0.165 1.165 7 C -0.346 4.346 8 H 0.064 0.936 9 N -0.355 5.355 10 C 0.010 3.990 11 C 0.036 3.964 12 N -0.345 5.345 13 C 0.329 3.671 14 O -0.469 6.469 15 C -0.268 4.268 16 C -0.019 4.019 17 C -0.160 4.160 18 C -0.148 4.148 19 C -0.158 4.158 20 C -0.149 4.149 21 C -0.131 4.131 22 C -0.189 4.189 23 C -0.235 4.235 24 H 0.066 0.934 25 H 0.206 0.794 26 H 0.055 0.945 27 H 0.099 0.901 28 H 0.244 0.756 29 H 0.150 0.850 30 H 0.087 0.913 31 H 0.114 0.886 32 H 0.077 0.923 33 H 0.091 0.909 34 H 0.097 0.903 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.104 0.896 38 H 0.098 0.902 39 H 0.108 0.892 40 H 0.119 0.881 41 H 0.139 0.861 42 H 0.121 0.879 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 10.951 -4.388 14.633 18.796 hybrid contribution -0.365 1.526 -0.837 1.778 sum 10.586 -2.862 13.796 17.623 Atomic orbital electron populations 1.69898 1.07334 1.26565 1.59358 1.25439 0.95900 1.00957 1.02507 0.85489 0.79040 0.79759 0.77942 1.21076 1.22637 1.16535 1.18686 0.81824 0.92817 1.41242 0.93624 1.42005 1.02273 1.02832 1.88362 1.20386 0.95520 0.89472 0.93666 1.20914 0.98821 0.91653 0.85054 1.45742 1.64519 1.11318 1.12931 1.18954 0.76405 0.87943 0.83829 1.90534 1.57665 1.16240 1.82475 1.22373 1.10817 0.99989 0.93642 1.22985 0.88729 0.96943 0.93287 1.21615 1.01815 0.92546 1.00001 1.21645 0.98488 1.01211 0.93496 1.21568 1.00724 0.95127 0.98400 1.21572 1.00351 0.97029 0.95992 1.21056 0.99334 0.99159 0.93577 1.23360 0.89938 1.03007 1.02551 1.23457 1.03974 0.99753 0.96352 0.93442 0.79393 0.94545 0.90069 0.75589 0.84984 0.91266 0.88643 0.92301 0.90879 0.90252 0.91658 0.91788 0.89648 0.90247 0.89167 0.88128 0.86119 0.87947 0.89927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -61.59 13.97 21.65 0.30 -61.29 16 2 C -0.06 -3.18 5.50 84.86 0.47 -2.71 16 3 Si 0.95 42.79 27.68 68.60 1.90 44.69 16 4 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 5 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 6 H -0.24 -9.38 6.60 99.48 0.66 -8.72 16 7 C -0.22 -11.62 9.52 84.04 0.80 -10.82 16 8 H 0.05 2.86 8.06 -2.91 -0.02 2.84 16 9 N -0.71 -30.61 4.29 -303.36 -1.30 -31.91 16 10 C 0.10 3.61 2.62 3.60 0.01 3.62 16 11 C 0.16 5.96 5.58 86.38 0.48 6.45 16 12 N -0.70 -26.64 5.03 -466.69 -2.35 -28.99 16 13 C 0.54 20.85 7.62 86.57 0.66 21.51 16 14 O -0.58 -24.89 13.20 -4.06 -0.05 -24.94 16 15 C -0.25 -8.10 9.66 23.43 0.23 -7.88 16 16 C -0.02 -0.49 5.38 -17.25 -0.09 -0.58 16 17 C -0.12 -3.42 5.33 30.25 0.16 -3.25 16 18 C -0.11 -2.26 5.95 30.80 0.18 -2.07 16 19 C -0.12 -1.94 5.81 30.57 0.18 -1.76 16 20 C -0.11 -1.81 5.94 30.66 0.18 -1.63 16 21 C -0.09 -1.97 6.04 30.10 0.18 -1.79 16 22 C -0.15 -4.00 10.10 30.62 0.31 -3.69 16 23 C -0.19 -6.10 10.18 30.62 0.31 -5.79 16 24 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 25 H 0.37 15.03 5.94 -92.70 -0.55 14.48 16 26 H 0.04 1.55 8.13 -2.38 -0.02 1.53 16 27 H 0.08 2.60 7.88 -2.39 -0.02 2.58 16 28 H 0.41 15.62 7.44 -92.71 -0.69 14.93 16 29 H 0.13 4.00 7.96 -2.91 -0.02 3.98 16 30 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.10 3.25 4.77 -19.21 -0.09 3.16 16 32 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 33 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.08 1.59 7.92 -2.39 -0.02 1.57 16 39 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 40 H 0.10 2.49 8.14 -2.38 -0.02 2.47 16 41 H 0.12 2.55 8.03 -2.39 -0.02 2.53 16 42 H 0.10 2.85 8.14 -2.39 -0.02 2.83 16 43 H 0.08 2.80 8.14 -2.38 -0.02 2.78 16 Total: -1.00 -68.39 344.21 2.19 -66.20 By element: Atomic # 1 Polarization: 47.01 SS G_CDS: -0.37 Total: 46.64 kcal Atomic # 6 Polarization: -14.46 SS G_CDS: 4.06 Total: -10.40 kcal Atomic # 7 Polarization: -118.84 SS G_CDS: -3.35 Total: -122.18 kcal Atomic # 8 Polarization: -24.89 SS G_CDS: -0.05 Total: -24.94 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 1.90 Total: 44.69 kcal Total: -68.39 2.19 -66.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269384253.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.142 kcal (2) G-P(sol) polarization free energy of solvation -68.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds