Wall clock time and date at job start Tue Mar 31 2020 00:31:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86802 * 119.99639 * 2 1 4 4 H 1.48503 * 109.47106 * 269.99970 * 3 2 1 5 5 H 1.48504 * 109.47263 * 29.99691 * 3 2 1 6 6 H 1.48495 * 109.47421 * 150.00023 * 3 2 1 7 7 C 1.38814 * 120.00460 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99557 * 0.02562 * 7 2 1 9 9 N 1.36937 * 120.00141 * 179.97438 * 7 2 1 10 10 C 1.46492 * 120.00088 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47285 * 185.01948 * 10 9 7 12 12 H 1.09003 * 109.99566 * 306.32613 * 11 10 9 13 13 C 1.54316 * 109.77537 * 67.47696 * 11 10 9 14 14 C 1.55160 * 102.86010 * 141.88720 * 13 11 10 15 15 C 1.54910 * 101.58214 * 324.30465 * 14 13 11 16 16 N 1.47019 * 109.88587 * 185.22851 * 11 10 9 17 17 C 1.34776 * 125.64693 * 61.67406 * 16 11 10 18 18 O 1.21286 * 119.99755 * 354.78873 * 17 16 11 19 19 C 1.50697 * 120.00160 * 174.78544 * 17 16 11 20 20 H 1.08996 * 115.52763 * 325.50197 * 19 17 16 21 21 C 1.53010 * 117.44000 * 110.96911 * 19 17 16 22 22 H 1.09001 * 119.29595 * 356.29463 * 21 19 17 23 23 C 1.54263 * 118.19686 * 201.22704 * 21 19 17 24 24 C 1.54891 * 104.19431 * 272.20799 * 23 21 19 25 25 C 1.54895 * 102.74940 * 37.94454 * 24 23 21 26 26 C 1.53002 * 117.46251 * 179.97438 * 19 17 16 27 27 H 1.09006 * 119.29701 * 3.73824 * 26 19 17 28 28 H 0.97000 * 120.00288 * 0.02562 * 1 2 3 29 29 H 0.97008 * 119.99496 * 0.02562 * 9 7 2 30 30 H 1.08993 * 109.47487 * 65.01149 * 10 9 7 31 31 H 1.09007 * 109.46684 * 305.01473 * 10 9 7 32 32 H 1.09002 * 110.92631 * 23.47992 * 13 11 10 33 33 H 1.08997 * 110.74338 * 260.21636 * 13 11 10 34 34 H 1.09003 * 111.00547 * 206.23164 * 14 13 11 35 35 H 1.08998 * 111.03647 * 82.39627 * 14 13 11 36 36 H 1.08997 * 110.36422 * 278.16960 * 15 14 13 37 37 H 1.09006 * 110.45702 * 155.89975 * 15 14 13 38 38 H 1.09004 * 110.48942 * 30.88347 * 23 21 19 39 39 H 1.08997 * 110.49165 * 153.53218 * 23 21 19 40 40 H 1.09002 * 110.76078 * 156.25581 * 24 23 21 41 41 H 1.08996 * 110.75753 * 279.62890 * 24 23 21 42 42 H 1.09001 * 110.48166 * 203.38207 * 25 24 23 43 43 H 1.08990 * 110.48833 * 80.73597 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6528 0.7000 6 1 3.5476 1.4404 0.7000 7 6 2.0104 -1.2021 0.0005 8 1 1.4704 -2.1374 0.0005 9 7 3.3797 -1.2020 0.0000 10 6 4.1123 -2.4706 0.0000 11 6 5.6118 -2.1937 0.1256 12 1 5.9277 -1.4942 -0.6483 13 6 5.9201 -1.6111 1.5209 14 6 7.2747 -2.2763 1.8813 15 6 7.1076 -3.6824 1.2530 16 7 6.3645 -3.4505 0.0012 17 6 6.3775 -4.2545 -1.0805 18 8 5.6569 -4.0115 -2.0253 19 6 7.2874 -5.4552 -1.1159 20 1 8.2469 -5.3325 -0.6135 21 6 6.6334 -6.8374 -1.0601 22 1 5.5530 -6.9116 -0.9362 23 6 7.4933 -8.0325 -0.5997 24 6 8.1612 -8.5433 -1.9005 25 6 8.4714 -7.2315 -2.6634 26 6 7.2549 -6.3283 -2.3719 27 1 6.6323 -6.0276 -3.2146 28 1 -0.4850 0.8400 -0.0004 29 1 3.8646 -0.3619 -0.0004 30 1 3.9177 -3.0026 -0.9312 31 1 3.7836 -3.0799 0.8420 32 1 5.1495 -1.8919 2.2389 33 1 6.0235 -0.5271 1.4723 34 1 7.4017 -2.3438 2.9618 35 1 8.1072 -1.7408 1.4249 36 1 6.5369 -4.3299 1.9186 37 1 8.0818 -4.1227 1.0400 38 1 8.2492 -7.7060 0.1145 39 1 6.8649 -8.8089 -0.1633 40 1 9.0796 -9.0859 -1.6759 41 1 7.4720 -9.1673 -2.4694 42 1 8.5567 -7.4233 -3.7330 43 1 9.3852 -6.7756 -2.2825 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270027774.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:31:57 Heat of formation + Delta-G solvation = 3.082538 kcal Electronic energy + Delta-G solvation = -22007.113403 eV Core-core repulsion = 18860.035913 eV Total energy + Delta-G solvation = -3147.077489 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.60945 -39.13872 -37.13198 -34.65482 -32.23954 -31.47044 -31.30313 -29.15371 -28.49514 -25.38638 -24.66240 -22.46602 -21.84718 -21.06741 -20.39422 -19.84008 -18.94878 -17.67845 -17.07161 -16.54799 -15.51952 -15.21903 -14.66396 -14.38911 -14.08267 -13.89584 -13.57050 -13.40701 -13.14175 -12.97159 -12.82967 -12.63833 -12.33810 -11.69184 -11.65800 -11.49474 -11.40876 -11.28798 -11.14225 -11.11677 -10.89253 -10.64948 -10.48714 -10.28181 -10.12331 -10.00215 -9.59378 -9.52197 -8.81150 -8.48379 -7.15775 -5.70676 -3.05749 2.52683 2.93403 3.39808 3.44103 3.48491 3.57901 4.15534 4.46559 4.49874 4.54892 4.62824 4.64197 4.85255 4.94094 4.98217 5.03714 5.15771 5.19870 5.29379 5.31610 5.38992 5.43927 5.51605 5.55748 5.58356 5.66683 5.74025 5.76968 5.79625 5.83898 5.85598 5.97985 6.05056 6.06106 6.16152 6.30478 6.45089 6.75039 6.98174 7.64495 8.05501 8.32327 8.47939 9.26932 9.99024 10.19310 11.48027 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.025926 B = 0.003993 C = 0.003694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.752823 B = 7010.663354 C = 7577.426000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.003 3.997 3 Si 0.885 3.115 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.238 4.238 8 H 0.089 0.911 9 N -0.752 5.752 10 C 0.150 3.850 11 C 0.127 3.873 12 H 0.074 0.926 13 C -0.124 4.124 14 C -0.135 4.135 15 C 0.103 3.897 16 N -0.609 5.609 17 C 0.554 3.446 18 O -0.526 6.526 19 C -0.156 4.156 20 H 0.117 0.883 21 C -0.139 4.139 22 H 0.116 0.884 23 C -0.095 4.095 24 C -0.123 4.123 25 C -0.096 4.096 26 C -0.133 4.133 27 H 0.123 0.877 28 H 0.259 0.741 29 H 0.359 0.641 30 H 0.042 0.958 31 H 0.028 0.972 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.069 0.931 39 H 0.073 0.927 40 H 0.069 0.931 41 H 0.071 0.929 42 H 0.073 0.927 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.672 -14.495 2.232 27.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.193 4.193 3 Si 0.715 3.285 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.368 4.368 8 H 0.107 0.893 9 N -0.398 5.398 10 C 0.022 3.978 11 C 0.024 3.976 12 H 0.092 0.908 13 C -0.162 4.162 14 C -0.173 4.173 15 C -0.020 4.020 16 N -0.343 5.343 17 C 0.342 3.658 18 O -0.401 6.401 19 C -0.177 4.177 20 H 0.135 0.865 21 C -0.158 4.158 22 H 0.134 0.866 23 C -0.132 4.132 24 C -0.161 4.161 25 C -0.133 4.133 26 C -0.151 4.151 27 H 0.141 0.859 28 H 0.069 0.931 29 H 0.192 0.808 30 H 0.060 0.940 31 H 0.046 0.954 32 H 0.104 0.896 33 H 0.098 0.902 34 H 0.101 0.899 35 H 0.092 0.908 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.087 0.913 39 H 0.092 0.908 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.092 0.908 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 22.040 -14.515 1.643 26.441 hybrid contribution 0.483 1.384 0.110 1.470 sum 22.522 -13.131 1.753 26.129 Atomic orbital electron populations 1.69703 1.05073 1.25717 1.57943 1.24655 0.95240 0.97124 1.02249 0.86533 0.79120 0.84998 0.77805 1.21090 1.21747 1.20367 1.19046 0.80476 0.94752 1.42526 0.89306 1.42557 1.04020 1.01891 1.91339 1.20960 0.87551 0.89600 0.99719 1.21845 0.93470 0.84713 0.97545 0.90820 1.22703 0.96817 1.00682 0.95994 1.22806 0.98291 0.95165 1.01047 1.22306 0.96134 0.97868 0.85736 1.48389 1.47565 1.23869 1.14498 1.19219 0.82563 0.82639 0.81341 1.90755 1.41408 1.72414 1.35548 1.22320 1.00490 0.90555 1.04341 0.86491 1.23259 0.99715 0.91062 1.01756 0.86621 1.21992 0.98100 0.95718 0.97419 1.22706 1.00332 0.97189 0.95868 1.21998 0.96330 0.94264 1.00741 1.23278 1.00145 0.99749 0.91959 0.85921 0.93115 0.80812 0.93964 0.95372 0.89628 0.90160 0.89891 0.90839 0.91172 0.90884 0.91254 0.90831 0.91241 0.91070 0.90847 0.91347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -30.35 13.97 55.49 0.78 -29.58 16 2 C 0.00 0.08 5.50 -17.43 -0.10 -0.01 16 3 Si 0.89 22.73 27.73 -169.99 -4.71 18.01 16 4 H -0.28 -7.32 7.11 56.52 0.40 -6.91 16 5 H -0.29 -7.50 7.11 56.52 0.40 -7.09 16 6 H -0.28 -6.57 6.52 56.52 0.37 -6.20 16 7 C -0.24 -7.11 10.47 -15.06 -0.16 -7.26 16 8 H 0.09 2.86 8.06 -52.49 -0.42 2.43 16 9 N -0.75 -19.02 5.22 -59.91 -0.31 -19.33 16 10 C 0.15 3.26 5.66 -4.05 -0.02 3.23 16 11 C 0.13 2.17 2.95 -66.96 -0.20 1.97 16 12 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 13 C -0.12 -1.72 6.23 -24.90 -0.16 -1.88 16 14 C -0.14 -1.33 7.08 -24.58 -0.17 -1.51 16 15 C 0.10 1.06 6.74 -2.53 -0.02 1.04 16 16 N -0.61 -8.89 3.07 -163.03 -0.50 -9.39 16 17 C 0.55 8.77 7.45 -10.99 -0.08 8.68 16 18 O -0.53 -10.70 15.11 5.55 0.08 -10.61 16 19 C -0.16 -1.79 5.04 -91.77 -0.46 -2.25 16 20 H 0.12 1.07 7.10 -51.93 -0.37 0.71 16 21 C -0.14 -1.45 6.64 -89.53 -0.59 -2.05 16 22 H 0.12 1.37 8.14 -51.93 -0.42 0.95 16 23 C -0.09 -0.71 6.63 -25.07 -0.17 -0.88 16 24 C -0.12 -0.84 6.91 -24.73 -0.17 -1.01 16 25 C -0.10 -0.76 6.63 -25.06 -0.17 -0.92 16 26 C -0.13 -1.45 6.39 -89.52 -0.57 -2.02 16 27 H 0.12 1.59 7.78 -51.93 -0.40 1.18 16 28 H 0.26 7.95 8.31 -40.82 -0.34 7.61 16 29 H 0.36 8.71 5.48 -40.82 -0.22 8.49 16 30 H 0.04 1.04 6.55 -51.93 -0.34 0.70 16 31 H 0.03 0.62 8.02 -51.92 -0.42 0.21 16 32 H 0.09 1.28 7.77 -51.93 -0.40 0.87 16 33 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.58 6.95 -51.93 -0.36 0.22 16 38 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 339.86 15.07 5.12 5.12 Total: -1.00 -35.06 339.86 -9.76 -44.82 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: -7.18 Total: 5.83 kcal Atomic # 6 Polarization: -1.83 SS G_CDS: -3.03 Total: -4.87 kcal Atomic # 7 Polarization: -58.27 SS G_CDS: -0.04 Total: -58.30 kcal Atomic # 8 Polarization: -10.70 SS G_CDS: 0.08 Total: -10.61 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -4.71 Total: 18.01 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -35.06 -9.76 -44.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270027774.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.900 kcal (2) G-P(sol) polarization free energy of solvation -35.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.817 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds