Wall clock time and date at job start Tue Mar 31 2020 00:31:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86802 * 119.99639 * 2 1 4 4 H 1.48503 * 109.47106 * 269.99970 * 3 2 1 5 5 H 1.48504 * 109.47263 * 29.99691 * 3 2 1 6 6 H 1.48495 * 109.47421 * 150.00023 * 3 2 1 7 7 C 1.38814 * 120.00460 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99557 * 0.02562 * 7 2 1 9 9 N 1.36937 * 120.00141 * 179.97438 * 7 2 1 10 10 C 1.46492 * 120.00088 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47285 * 185.01948 * 10 9 7 12 12 H 1.09003 * 109.99566 * 306.32613 * 11 10 9 13 13 C 1.54316 * 109.77537 * 67.47696 * 11 10 9 14 14 C 1.55160 * 102.86010 * 141.88720 * 13 11 10 15 15 C 1.54910 * 101.58214 * 324.30465 * 14 13 11 16 16 N 1.47019 * 109.88587 * 185.22851 * 11 10 9 17 17 C 1.34776 * 125.64693 * 61.67406 * 16 11 10 18 18 O 1.21286 * 119.99755 * 354.78873 * 17 16 11 19 19 C 1.50697 * 120.00160 * 174.78544 * 17 16 11 20 20 H 1.08996 * 115.52763 * 325.50197 * 19 17 16 21 21 C 1.53010 * 117.44000 * 110.96911 * 19 17 16 22 22 H 1.09001 * 119.29595 * 356.29463 * 21 19 17 23 23 C 1.54263 * 118.19686 * 201.22704 * 21 19 17 24 24 C 1.54891 * 104.19431 * 272.20799 * 23 21 19 25 25 C 1.54895 * 102.74940 * 37.94454 * 24 23 21 26 26 C 1.53002 * 117.46251 * 179.97438 * 19 17 16 27 27 H 1.09006 * 119.29701 * 3.73824 * 26 19 17 28 28 H 0.97000 * 120.00288 * 0.02562 * 1 2 3 29 29 H 0.97008 * 119.99496 * 0.02562 * 9 7 2 30 30 H 1.08993 * 109.47487 * 65.01149 * 10 9 7 31 31 H 1.09007 * 109.46684 * 305.01473 * 10 9 7 32 32 H 1.09002 * 110.92631 * 23.47992 * 13 11 10 33 33 H 1.08997 * 110.74338 * 260.21636 * 13 11 10 34 34 H 1.09003 * 111.00547 * 206.23164 * 14 13 11 35 35 H 1.08998 * 111.03647 * 82.39627 * 14 13 11 36 36 H 1.08997 * 110.36422 * 278.16960 * 15 14 13 37 37 H 1.09006 * 110.45702 * 155.89975 * 15 14 13 38 38 H 1.09004 * 110.48942 * 30.88347 * 23 21 19 39 39 H 1.08997 * 110.49165 * 153.53218 * 23 21 19 40 40 H 1.09002 * 110.76078 * 156.25581 * 24 23 21 41 41 H 1.08996 * 110.75753 * 279.62890 * 24 23 21 42 42 H 1.09001 * 110.48166 * 203.38207 * 25 24 23 43 43 H 1.08990 * 110.48833 * 80.73597 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6528 0.7000 6 1 3.5476 1.4404 0.7000 7 6 2.0104 -1.2021 0.0005 8 1 1.4704 -2.1374 0.0005 9 7 3.3797 -1.2020 0.0000 10 6 4.1123 -2.4706 0.0000 11 6 5.6118 -2.1937 0.1256 12 1 5.9277 -1.4942 -0.6483 13 6 5.9201 -1.6111 1.5209 14 6 7.2747 -2.2763 1.8813 15 6 7.1076 -3.6824 1.2530 16 7 6.3645 -3.4505 0.0012 17 6 6.3775 -4.2545 -1.0805 18 8 5.6569 -4.0115 -2.0253 19 6 7.2874 -5.4552 -1.1159 20 1 8.2469 -5.3325 -0.6135 21 6 6.6334 -6.8374 -1.0601 22 1 5.5530 -6.9116 -0.9362 23 6 7.4933 -8.0325 -0.5997 24 6 8.1612 -8.5433 -1.9005 25 6 8.4714 -7.2315 -2.6634 26 6 7.2549 -6.3283 -2.3719 27 1 6.6323 -6.0276 -3.2146 28 1 -0.4850 0.8400 -0.0004 29 1 3.8646 -0.3619 -0.0004 30 1 3.9177 -3.0026 -0.9312 31 1 3.7836 -3.0799 0.8420 32 1 5.1495 -1.8919 2.2389 33 1 6.0235 -0.5271 1.4723 34 1 7.4017 -2.3438 2.9618 35 1 8.1072 -1.7408 1.4249 36 1 6.5369 -4.3299 1.9186 37 1 8.0818 -4.1227 1.0400 38 1 8.2492 -7.7060 0.1145 39 1 6.8649 -8.8089 -0.1633 40 1 9.0796 -9.0859 -1.6759 41 1 7.4720 -9.1673 -2.4694 42 1 8.5567 -7.4233 -3.7330 43 1 9.3852 -6.7756 -2.2825 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270027774.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:31:56 Heat of formation + Delta-G solvation = -20.099941 kcal Electronic energy + Delta-G solvation = -22008.118670 eV Core-core repulsion = 18860.035913 eV Total energy + Delta-G solvation = -3148.082757 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.67505 -40.10794 -38.37905 -36.62050 -33.81936 -32.99122 -32.23211 -30.73701 -29.13571 -26.87746 -25.94004 -24.03966 -23.20966 -21.94916 -21.38111 -20.66843 -20.33145 -19.48177 -18.32512 -17.70038 -16.72832 -16.50500 -15.98890 -15.72624 -15.41591 -15.29323 -14.98341 -14.83108 -14.17708 -14.09178 -14.00211 -13.78053 -13.74260 -13.20579 -13.04550 -12.85168 -12.43683 -12.27955 -12.16877 -12.11788 -11.97876 -11.94265 -11.84722 -11.68675 -11.62475 -11.15234 -11.10912 -10.90969 -10.62374 -9.72963 -9.39622 -8.09074 -5.45090 1.32375 1.37121 1.39158 1.45935 1.81603 2.43692 2.68121 3.20751 3.27483 3.56495 3.64902 3.69374 3.73370 3.75188 3.91851 4.00537 4.19149 4.22144 4.26208 4.27980 4.46997 4.50278 4.52157 4.65002 4.72842 4.81091 4.83238 4.87612 4.99365 5.00614 5.06502 5.12471 5.16501 5.22986 5.23298 5.27445 5.33453 5.40069 5.51234 5.65342 6.13273 6.50243 6.98215 7.11004 7.70995 7.95280 9.12690 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.025926 B = 0.003993 C = 0.003694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.752823 B = 7010.663354 C = 7577.426000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.983 5.983 2 C -0.062 4.062 3 Si 0.962 3.038 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.242 1.242 7 C -0.244 4.244 8 H 0.045 0.955 9 N -0.748 5.748 10 C 0.155 3.845 11 C 0.131 3.869 12 H 0.061 0.939 13 C -0.123 4.123 14 C -0.118 4.118 15 C 0.095 3.905 16 N -0.608 5.608 17 C 0.542 3.458 18 O -0.588 6.588 19 C -0.150 4.150 20 H 0.154 0.846 21 C -0.138 4.138 22 H 0.089 0.911 23 C -0.087 4.087 24 C -0.119 4.119 25 C -0.089 4.089 26 C -0.145 4.145 27 H 0.088 0.912 28 H 0.261 0.739 29 H 0.368 0.632 30 H 0.004 0.996 31 H 0.022 0.978 32 H 0.072 0.928 33 H 0.085 0.915 34 H 0.113 0.887 35 H 0.089 0.911 36 H 0.077 0.923 37 H 0.110 0.890 38 H 0.090 0.910 39 H 0.079 0.921 40 H 0.094 0.906 41 H 0.065 0.935 42 H 0.076 0.924 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.174 -14.538 4.122 31.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.633 5.633 2 C -0.253 4.253 3 Si 0.787 3.213 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.166 1.166 7 C -0.375 4.375 8 H 0.063 0.937 9 N -0.395 5.395 10 C 0.027 3.973 11 C 0.027 3.973 12 H 0.079 0.921 13 C -0.162 4.162 14 C -0.156 4.156 15 C -0.026 4.026 16 N -0.341 5.341 17 C 0.332 3.668 18 O -0.468 6.468 19 C -0.170 4.170 20 H 0.171 0.829 21 C -0.157 4.157 22 H 0.107 0.893 23 C -0.124 4.124 24 C -0.156 4.156 25 C -0.126 4.126 26 C -0.164 4.164 27 H 0.107 0.893 28 H 0.070 0.930 29 H 0.202 0.798 30 H 0.022 0.978 31 H 0.040 0.960 32 H 0.091 0.909 33 H 0.104 0.896 34 H 0.131 0.869 35 H 0.107 0.893 36 H 0.095 0.905 37 H 0.128 0.872 38 H 0.109 0.891 39 H 0.098 0.902 40 H 0.112 0.888 41 H 0.084 0.916 42 H 0.094 0.906 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 26.604 -14.591 3.578 30.553 hybrid contribution -1.067 1.308 -0.531 1.769 sum 25.537 -13.284 3.047 28.946 Atomic orbital electron populations 1.69899 1.07284 1.27051 1.59069 1.25598 0.96272 1.01599 1.01852 0.85325 0.79040 0.78756 0.78187 1.20757 1.21299 1.16601 1.18953 0.82528 0.93427 1.42570 0.93676 1.42429 1.02480 1.03508 1.91054 1.20933 0.91198 0.87812 0.97332 1.21655 0.89944 0.86101 0.99601 0.92126 1.22672 0.99195 1.01160 0.93130 1.22824 0.95868 0.93885 1.03011 1.22682 0.97374 0.98862 0.83649 1.48548 1.47067 1.22695 1.15778 1.20143 0.82367 0.83597 0.80701 1.90724 1.44048 1.74086 1.37937 1.22315 1.00744 0.88757 1.05201 0.82882 1.23343 0.98983 0.91783 1.01556 0.89307 1.22032 0.98056 0.94149 0.98180 1.22713 1.01236 0.96595 0.95094 1.22022 0.95198 0.93997 1.01367 1.23346 1.01621 1.00348 0.91077 0.89347 0.93023 0.79780 0.97789 0.96036 0.90904 0.89603 0.86884 0.89262 0.90465 0.87202 0.89138 0.90196 0.88779 0.91578 0.90565 0.89629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -65.84 13.97 21.65 0.30 -65.53 16 2 C -0.06 -3.84 5.50 84.86 0.47 -3.37 16 3 Si 0.96 46.97 27.73 68.60 1.90 48.87 16 4 H -0.28 -13.62 7.11 99.48 0.71 -12.91 16 5 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 6 H -0.24 -10.33 6.52 99.48 0.65 -9.68 16 7 C -0.24 -15.23 10.47 84.03 0.88 -14.35 16 8 H 0.05 3.13 8.06 -2.91 -0.02 3.11 16 9 N -0.75 -38.85 5.22 -343.47 -1.79 -40.64 16 10 C 0.15 7.09 5.66 86.38 0.49 7.58 16 11 C 0.13 4.47 2.95 45.34 0.13 4.60 16 12 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 13 C -0.12 -3.16 6.23 31.78 0.20 -2.96 16 14 C -0.12 -1.81 7.08 31.99 0.23 -1.58 16 15 C 0.10 1.62 6.74 86.86 0.59 2.20 16 16 N -0.61 -17.31 3.07 -788.09 -2.42 -19.72 16 17 C 0.54 17.50 7.45 87.66 0.65 18.15 16 18 O -0.59 -25.79 15.11 -3.05 -0.05 -25.83 16 19 C -0.15 -3.24 5.04 -11.54 -0.06 -3.29 16 20 H 0.15 2.16 7.10 -2.39 -0.02 2.14 16 21 C -0.14 -2.79 6.64 -10.09 -0.07 -2.86 16 22 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 23 C -0.09 -1.05 6.63 31.67 0.21 -0.84 16 24 C -0.12 -1.26 6.91 31.89 0.22 -1.04 16 25 C -0.09 -1.19 6.63 31.68 0.21 -0.98 16 26 C -0.15 -3.16 6.39 -10.08 -0.06 -3.22 16 27 H 0.09 2.52 7.78 -2.38 -0.02 2.50 16 28 H 0.26 16.43 8.31 -92.71 -0.77 15.66 16 29 H 0.37 17.66 5.48 -92.70 -0.51 17.15 16 30 H 0.00 0.22 6.55 -2.39 -0.02 0.20 16 31 H 0.02 1.00 8.02 -2.38 -0.02 0.99 16 32 H 0.07 2.06 7.77 -2.39 -0.02 2.04 16 33 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.11 1.13 6.95 -2.38 -0.02 1.11 16 38 H 0.09 0.77 8.14 -2.38 -0.02 0.75 16 39 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 41 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 42 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -83.26 339.86 2.46 -80.80 By element: Atomic # 1 Polarization: 23.59 SS G_CDS: 0.42 Total: 24.01 kcal Atomic # 6 Polarization: -6.04 SS G_CDS: 4.08 Total: -1.96 kcal Atomic # 7 Polarization: -121.99 SS G_CDS: -3.91 Total: -125.90 kcal Atomic # 8 Polarization: -25.79 SS G_CDS: -0.05 Total: -25.83 kcal Atomic # 14 Polarization: 46.97 SS G_CDS: 1.90 Total: 48.87 kcal Total: -83.26 2.46 -80.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270027774.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.704 kcal (2) G-P(sol) polarization free energy of solvation -83.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds