Wall clock time and date at job start Tue Mar 31 2020 00:31:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86794 * 120.00284 * 2 1 4 4 H 1.48500 * 109.47577 * 89.99949 * 3 2 1 5 5 H 1.48505 * 109.47210 * 329.99675 * 3 2 1 6 6 H 1.48503 * 109.47382 * 210.00031 * 3 2 1 7 7 C 1.38809 * 119.99649 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00126 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00199 * 359.97438 * 7 2 1 10 10 C 1.46496 * 120.00260 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47198 * 174.92134 * 10 9 7 12 12 H 1.08995 * 109.87528 * 55.80009 * 11 10 9 13 13 C 1.54328 * 109.88303 * 294.78058 * 11 10 9 14 14 C 1.55151 * 102.94385 * 218.39223 * 13 11 10 15 15 C 1.54904 * 101.58337 * 35.50078 * 14 13 11 16 16 N 1.47026 * 109.88248 * 176.81652 * 11 10 9 17 17 C 1.34776 * 125.64985 * 298.31191 * 16 11 10 18 18 O 1.21290 * 119.99740 * 4.94021 * 17 16 11 19 19 C 1.50694 * 120.00235 * 184.93755 * 17 16 11 20 20 H 1.09000 * 115.52583 * 34.50520 * 19 17 16 21 21 C 1.53007 * 117.46022 * 180.02562 * 19 17 16 22 22 H 1.08993 * 119.29573 * 355.35473 * 21 19 17 23 23 C 1.54270 * 118.19580 * 201.21579 * 21 19 17 24 24 C 1.54889 * 104.19125 * 272.20869 * 23 21 19 25 25 C 1.54888 * 102.75250 * 37.94619 * 24 23 21 26 26 C 1.53011 * 117.46101 * 249.04173 * 19 17 16 27 27 H 1.08996 * 119.29414 * 3.70943 * 26 19 17 28 28 H 0.96996 * 120.00538 * 179.97438 * 1 2 3 29 29 H 0.97001 * 119.99552 * 0.02562 * 9 7 2 30 30 H 1.09003 * 109.47062 * 294.92528 * 10 9 7 31 31 H 1.09008 * 109.47037 * 54.92032 * 10 9 7 32 32 H 1.09001 * 110.71588 * 336.75663 * 13 11 10 33 33 H 1.09000 * 110.71747 * 99.85014 * 13 11 10 34 34 H 1.09003 * 111.00522 * 153.57779 * 14 13 11 35 35 H 1.09008 * 111.00235 * 277.38889 * 14 13 11 36 36 H 1.09005 * 110.36490 * 81.83195 * 15 14 13 37 37 H 1.09001 * 110.37107 * 204.14846 * 15 14 13 38 38 H 1.08995 * 110.48423 * 30.88627 * 23 21 19 39 39 H 1.08999 * 110.48168 * 153.39785 * 23 21 19 40 40 H 1.09003 * 110.75020 * 156.26180 * 24 23 21 41 41 H 1.09002 * 110.75716 * 279.43894 * 24 23 21 42 42 H 1.09000 * 110.48487 * 80.72891 * 25 24 23 43 43 H 1.09000 * 110.48737 * 203.24918 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4978 2.0464 1.4000 5 1 1.4478 2.6526 -0.7001 6 1 3.5478 1.4401 -0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0001 9 7 1.3254 -2.3881 -0.0005 10 6 2.0578 -3.6568 -0.0005 11 6 1.0684 -4.8168 0.1272 12 1 0.3266 -4.7605 -0.6694 13 6 0.3684 -4.7608 1.5014 14 6 0.2674 -6.2564 1.9013 15 6 1.5884 -6.8228 1.3234 16 7 1.7869 -6.0974 0.0517 17 6 2.5052 -6.5342 -1.0017 18 8 2.6731 -5.8127 -1.9622 19 6 3.0998 -7.9187 -0.9862 20 1 2.5068 -8.6790 -0.4779 21 6 3.9050 -8.3546 -2.2121 22 1 3.9594 -7.6936 -3.0771 23 6 4.0958 -9.8653 -2.4595 24 6 5.3701 -10.2238 -1.6553 25 6 5.2245 -9.3573 -0.3798 26 6 4.6228 -8.0316 -0.8904 27 1 5.2185 -7.1260 -0.7757 28 1 -0.4851 -0.8400 -0.0004 29 1 0.3554 -2.3880 -0.0005 30 1 2.6146 -3.7550 -0.9325 31 1 2.7510 -3.6762 0.8405 32 1 0.9742 -4.2093 2.2205 33 1 -0.6222 -4.3150 1.4116 34 1 0.2347 -6.3698 2.9849 35 1 -0.5977 -6.7280 1.4349 36 1 2.4155 -6.6276 2.0060 37 1 1.4933 -7.8926 1.1375 38 1 3.2384 -10.4244 -2.0849 39 1 4.2442 -10.0622 -3.5212 40 1 5.3818 -11.2841 -1.4027 41 1 6.2672 -9.9508 -2.2110 42 1 4.5494 -9.8344 0.3305 43 1 6.1988 -9.1851 0.0777 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270027777.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:31:59 Heat of formation + Delta-G solvation = -1.244734 kcal Electronic energy + Delta-G solvation = -21981.567156 eV Core-core repulsion = 18834.302022 eV Total energy + Delta-G solvation = -3147.265134 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.58607 -39.10576 -37.10708 -34.74061 -32.25858 -31.36635 -31.27004 -28.54796 -28.49547 -25.19833 -24.39032 -22.69775 -22.09207 -21.09645 -20.36185 -19.84476 -18.83475 -17.49012 -17.00272 -16.46632 -15.63469 -15.20297 -14.79969 -14.23086 -14.08663 -13.67174 -13.63582 -13.40631 -13.29897 -13.10298 -12.91842 -12.60026 -12.19322 -11.67745 -11.64100 -11.48256 -11.41350 -11.19558 -11.12953 -10.76735 -10.59547 -10.54966 -10.42718 -10.27896 -10.00849 -9.96983 -9.56193 -9.15886 -8.78563 -8.45079 -6.91866 -6.04083 -3.02567 2.53719 2.95300 3.56041 3.58134 3.61835 3.75817 4.15534 4.46468 4.49746 4.58106 4.65232 4.74842 4.87765 4.94005 4.98101 5.06348 5.15517 5.19725 5.30534 5.36006 5.42617 5.43775 5.54713 5.56065 5.66547 5.73597 5.76783 5.78971 5.83133 5.88778 5.93065 6.03890 6.04990 6.11112 6.16280 6.35687 6.50775 6.78580 7.00456 7.67217 7.88789 8.33793 8.82269 9.29966 10.16021 10.31414 11.44892 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.023461 B = 0.003868 C = 0.003522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.206335 B = 7237.448869 C = 7948.379250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.047 4.047 3 Si 1.084 2.916 4 H -0.296 1.296 5 H -0.288 1.288 6 H -0.295 1.295 7 C -0.325 4.325 8 H 0.063 0.937 9 N -0.740 5.740 10 C 0.151 3.849 11 C 0.129 3.871 12 H 0.073 0.927 13 C -0.121 4.121 14 C -0.135 4.135 15 C 0.103 3.897 16 N -0.609 5.609 17 C 0.554 3.446 18 O -0.527 6.527 19 C -0.156 4.156 20 H 0.117 0.883 21 C -0.133 4.133 22 H 0.123 0.877 23 C -0.096 4.096 24 C -0.123 4.123 25 C -0.095 4.095 26 C -0.138 4.138 27 H 0.115 0.885 28 H 0.254 0.746 29 H 0.366 0.634 30 H 0.035 0.965 31 H 0.020 0.980 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.068 0.932 39 H 0.073 0.927 40 H 0.069 0.931 41 H 0.070 0.930 42 H 0.069 0.931 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.192 -24.032 2.609 24.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.244 4.244 3 Si 0.915 3.085 4 H -0.224 1.224 5 H -0.214 1.214 6 H -0.222 1.222 7 C -0.456 4.456 8 H 0.081 0.919 9 N -0.386 5.386 10 C 0.023 3.977 11 C 0.026 3.974 12 H 0.091 0.909 13 C -0.159 4.159 14 C -0.173 4.173 15 C -0.020 4.020 16 N -0.343 5.343 17 C 0.342 3.658 18 O -0.403 6.403 19 C -0.177 4.177 20 H 0.135 0.865 21 C -0.151 4.151 22 H 0.141 0.859 23 C -0.134 4.134 24 C -0.161 4.161 25 C -0.132 4.132 26 C -0.157 4.157 27 H 0.133 0.867 28 H 0.065 0.935 29 H 0.199 0.801 30 H 0.053 0.947 31 H 0.038 0.962 32 H 0.101 0.899 33 H 0.100 0.900 34 H 0.101 0.899 35 H 0.092 0.908 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.087 0.913 39 H 0.092 0.908 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 6.435 -22.013 2.000 23.022 hybrid contribution -0.184 -1.618 0.109 1.632 sum 6.251 -23.631 2.109 24.534 Atomic orbital electron populations 1.70846 1.05985 1.28303 1.54132 1.25765 0.97088 1.00899 1.00663 0.83181 0.73909 0.75280 0.76157 1.22370 1.21377 1.22190 1.20056 0.92024 0.85700 1.47847 0.91862 1.42221 1.04730 1.00747 1.90922 1.20909 0.93252 0.84540 0.98971 1.21825 0.94308 0.83381 0.97859 0.90929 1.22658 1.01661 0.95560 0.95993 1.22801 0.96802 0.96548 1.01138 1.22361 0.97977 0.96260 0.85410 1.48487 1.51062 1.19824 1.14957 1.19207 0.77887 0.87132 0.81539 1.90750 1.58753 1.56993 1.33849 1.22322 0.94816 0.95924 1.04668 0.86494 1.23259 1.02380 0.97169 0.92319 0.85945 1.22002 0.97810 0.92916 1.00660 1.22694 0.98165 0.99373 0.95826 1.21988 1.00762 0.93043 0.97406 1.23247 0.91176 0.99933 1.01329 0.86708 0.93485 0.80128 0.94706 0.96172 0.89890 0.90001 0.89911 0.90806 0.91230 0.90896 0.91349 0.90845 0.91248 0.91084 0.91235 0.90842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -30.16 13.70 55.49 0.76 -29.40 16 2 C -0.05 -1.43 5.50 -17.43 -0.10 -1.52 16 3 Si 1.08 27.07 29.92 -169.99 -5.09 21.98 16 4 H -0.30 -7.11 7.11 56.52 0.40 -6.71 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 6 H -0.30 -7.04 7.11 56.52 0.40 -6.63 16 7 C -0.33 -9.76 9.99 -15.06 -0.15 -9.91 16 8 H 0.06 1.90 7.83 -52.48 -0.41 1.49 16 9 N -0.74 -19.96 5.38 -59.91 -0.32 -20.28 16 10 C 0.15 3.49 5.63 -4.05 -0.02 3.47 16 11 C 0.13 2.35 2.96 -66.95 -0.20 2.15 16 12 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 13 C -0.12 -1.81 6.13 -24.90 -0.15 -1.97 16 14 C -0.13 -1.45 7.08 -24.59 -0.17 -1.62 16 15 C 0.10 1.14 6.76 -2.36 -0.02 1.12 16 16 N -0.61 -9.40 3.07 -162.76 -0.50 -9.91 16 17 C 0.55 9.15 7.45 -10.99 -0.08 9.06 16 18 O -0.53 -11.12 15.14 5.55 0.08 -11.04 16 19 C -0.16 -1.86 5.05 -91.77 -0.46 -2.33 16 20 H 0.12 1.13 7.12 -51.93 -0.37 0.76 16 21 C -0.13 -1.49 6.39 -89.52 -0.57 -2.06 16 22 H 0.12 1.62 7.78 -51.93 -0.40 1.22 16 23 C -0.10 -0.79 6.63 -25.07 -0.17 -0.95 16 24 C -0.12 -0.86 6.91 -24.74 -0.17 -1.03 16 25 C -0.09 -0.73 6.63 -25.06 -0.17 -0.90 16 26 C -0.14 -1.48 6.64 -89.51 -0.59 -2.08 16 27 H 0.11 1.39 8.14 -51.93 -0.42 0.97 16 28 H 0.25 7.95 6.77 -40.82 -0.28 7.67 16 29 H 0.37 9.85 6.38 -40.82 -0.26 9.59 16 30 H 0.04 0.91 6.61 -51.93 -0.34 0.56 16 31 H 0.02 0.47 8.07 -51.92 -0.42 0.05 16 32 H 0.08 1.36 7.80 -51.93 -0.40 0.96 16 33 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.07 0.74 8.14 -51.92 -0.42 0.31 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.07 0.62 6.98 -51.93 -0.36 0.26 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 LS Contribution 341.33 15.07 5.14 5.14 Total: -1.00 -35.46 341.33 -10.07 -45.53 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: -7.12 Total: 6.53 kcal Atomic # 6 Polarization: -5.54 SS G_CDS: -3.02 Total: -8.56 kcal Atomic # 7 Polarization: -59.52 SS G_CDS: -0.06 Total: -59.59 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: 0.08 Total: -11.04 kcal Atomic # 14 Polarization: 27.07 SS G_CDS: -5.09 Total: 21.98 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -35.46 -10.07 -45.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270027777.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.280 kcal (2) G-P(sol) polarization free energy of solvation -35.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds