Wall clock time and date at job start Tue Mar 31 2020 00:31:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86794 * 120.00284 * 2 1 4 4 H 1.48500 * 109.47577 * 89.99949 * 3 2 1 5 5 H 1.48505 * 109.47210 * 329.99675 * 3 2 1 6 6 H 1.48503 * 109.47382 * 210.00031 * 3 2 1 7 7 C 1.38809 * 119.99649 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00126 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00199 * 359.97438 * 7 2 1 10 10 C 1.46496 * 120.00260 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47198 * 174.92134 * 10 9 7 12 12 H 1.08995 * 109.87528 * 55.80009 * 11 10 9 13 13 C 1.54328 * 109.88303 * 294.78058 * 11 10 9 14 14 C 1.55151 * 102.94385 * 218.39223 * 13 11 10 15 15 C 1.54904 * 101.58337 * 35.50078 * 14 13 11 16 16 N 1.47026 * 109.88248 * 176.81652 * 11 10 9 17 17 C 1.34776 * 125.64985 * 298.31191 * 16 11 10 18 18 O 1.21290 * 119.99740 * 4.94021 * 17 16 11 19 19 C 1.50694 * 120.00235 * 184.93755 * 17 16 11 20 20 H 1.09000 * 115.52583 * 34.50520 * 19 17 16 21 21 C 1.53007 * 117.46022 * 180.02562 * 19 17 16 22 22 H 1.08993 * 119.29573 * 355.35473 * 21 19 17 23 23 C 1.54270 * 118.19580 * 201.21579 * 21 19 17 24 24 C 1.54889 * 104.19125 * 272.20869 * 23 21 19 25 25 C 1.54888 * 102.75250 * 37.94619 * 24 23 21 26 26 C 1.53011 * 117.46101 * 249.04173 * 19 17 16 27 27 H 1.08996 * 119.29414 * 3.70943 * 26 19 17 28 28 H 0.96996 * 120.00538 * 179.97438 * 1 2 3 29 29 H 0.97001 * 119.99552 * 0.02562 * 9 7 2 30 30 H 1.09003 * 109.47062 * 294.92528 * 10 9 7 31 31 H 1.09008 * 109.47037 * 54.92032 * 10 9 7 32 32 H 1.09001 * 110.71588 * 336.75663 * 13 11 10 33 33 H 1.09000 * 110.71747 * 99.85014 * 13 11 10 34 34 H 1.09003 * 111.00522 * 153.57779 * 14 13 11 35 35 H 1.09008 * 111.00235 * 277.38889 * 14 13 11 36 36 H 1.09005 * 110.36490 * 81.83195 * 15 14 13 37 37 H 1.09001 * 110.37107 * 204.14846 * 15 14 13 38 38 H 1.08995 * 110.48423 * 30.88627 * 23 21 19 39 39 H 1.08999 * 110.48168 * 153.39785 * 23 21 19 40 40 H 1.09003 * 110.75020 * 156.26180 * 24 23 21 41 41 H 1.09002 * 110.75716 * 279.43894 * 24 23 21 42 42 H 1.09000 * 110.48487 * 80.72891 * 25 24 23 43 43 H 1.09000 * 110.48737 * 203.24918 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4978 2.0464 1.4000 5 1 1.4478 2.6526 -0.7001 6 1 3.5478 1.4401 -0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0001 9 7 1.3254 -2.3881 -0.0005 10 6 2.0578 -3.6568 -0.0005 11 6 1.0684 -4.8168 0.1272 12 1 0.3266 -4.7605 -0.6694 13 6 0.3684 -4.7608 1.5014 14 6 0.2674 -6.2564 1.9013 15 6 1.5884 -6.8228 1.3234 16 7 1.7869 -6.0974 0.0517 17 6 2.5052 -6.5342 -1.0017 18 8 2.6731 -5.8127 -1.9622 19 6 3.0998 -7.9187 -0.9862 20 1 2.5068 -8.6790 -0.4779 21 6 3.9050 -8.3546 -2.2121 22 1 3.9594 -7.6936 -3.0771 23 6 4.0958 -9.8653 -2.4595 24 6 5.3701 -10.2238 -1.6553 25 6 5.2245 -9.3573 -0.3798 26 6 4.6228 -8.0316 -0.8904 27 1 5.2185 -7.1260 -0.7757 28 1 -0.4851 -0.8400 -0.0004 29 1 0.3554 -2.3880 -0.0005 30 1 2.6146 -3.7550 -0.9325 31 1 2.7510 -3.6762 0.8405 32 1 0.9742 -4.2093 2.2205 33 1 -0.6222 -4.3150 1.4116 34 1 0.2347 -6.3698 2.9849 35 1 -0.5977 -6.7280 1.4349 36 1 2.4155 -6.6276 2.0060 37 1 1.4933 -7.8926 1.1375 38 1 3.2384 -10.4244 -2.0849 39 1 4.2442 -10.0622 -3.5212 40 1 5.3818 -11.2841 -1.4027 41 1 6.2672 -9.9508 -2.2110 42 1 4.5494 -9.8344 0.3305 43 1 6.1988 -9.1851 0.0777 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270027777.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:31:59 Heat of formation + Delta-G solvation = -24.102842 kcal Electronic energy + Delta-G solvation = -21982.558358 eV Core-core repulsion = 18834.302022 eV Total energy + Delta-G solvation = -3148.256336 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.70951 -40.13887 -38.43022 -36.80445 -33.70738 -32.91328 -32.27562 -30.21842 -29.16292 -26.63412 -25.97773 -24.57013 -23.26578 -21.99682 -21.37412 -20.68738 -20.15983 -19.39944 -18.39697 -17.73476 -17.08829 -16.19579 -16.05499 -15.75654 -15.57820 -15.34016 -15.13334 -14.95240 -14.26771 -14.06668 -13.87749 -13.82710 -13.60837 -13.16089 -12.76911 -12.65473 -12.46728 -12.29842 -12.18594 -12.02000 -12.00082 -11.92140 -11.74764 -11.68994 -11.38426 -11.18110 -11.09383 -10.92821 -10.66086 -9.79604 -9.21753 -8.49667 -5.43617 1.32418 1.53093 1.65059 1.75437 1.80465 2.64713 2.65480 3.22596 3.31442 3.53657 3.60090 3.66318 3.71763 3.78577 3.87782 3.96641 4.15661 4.17604 4.20735 4.23436 4.41028 4.46846 4.50038 4.60415 4.66776 4.72991 4.80984 4.82057 4.91306 4.97876 4.99629 5.05851 5.13947 5.21112 5.21502 5.24564 5.26213 5.32749 5.47673 5.49253 6.40823 6.45326 6.97817 7.06143 7.87513 8.00282 9.02393 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.023461 B = 0.003868 C = 0.003522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.206335 B = 7237.448869 C = 7948.379250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.098 4.098 3 Si 1.134 2.866 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.280 1.280 7 C -0.343 4.343 8 H 0.057 0.943 9 N -0.748 5.748 10 C 0.160 3.840 11 C 0.135 3.865 12 H 0.050 0.950 13 C -0.118 4.118 14 C -0.118 4.118 15 C 0.097 3.903 16 N -0.608 5.608 17 C 0.542 3.458 18 O -0.590 6.590 19 C -0.152 4.152 20 H 0.153 0.847 21 C -0.145 4.145 22 H 0.088 0.912 23 C -0.089 4.089 24 C -0.118 4.118 25 C -0.087 4.087 26 C -0.134 4.134 27 H 0.090 0.910 28 H 0.245 0.755 29 H 0.363 0.637 30 H -0.002 1.002 31 H 0.017 0.983 32 H 0.067 0.933 33 H 0.077 0.923 34 H 0.114 0.886 35 H 0.088 0.912 36 H 0.079 0.921 37 H 0.112 0.888 38 H 0.084 0.916 39 H 0.076 0.924 40 H 0.094 0.906 41 H 0.067 0.933 42 H 0.090 0.910 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.637 -26.855 4.548 28.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.615 5.615 2 C -0.289 4.289 3 Si 0.957 3.043 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.206 1.206 7 C -0.474 4.474 8 H 0.075 0.925 9 N -0.393 5.393 10 C 0.032 3.968 11 C 0.031 3.969 12 H 0.068 0.932 13 C -0.156 4.156 14 C -0.155 4.155 15 C -0.024 4.024 16 N -0.341 5.341 17 C 0.332 3.668 18 O -0.470 6.470 19 C -0.172 4.172 20 H 0.171 0.829 21 C -0.164 4.164 22 H 0.107 0.893 23 C -0.127 4.127 24 C -0.156 4.156 25 C -0.124 4.124 26 C -0.153 4.153 27 H 0.108 0.892 28 H 0.055 0.945 29 H 0.196 0.804 30 H 0.016 0.984 31 H 0.035 0.965 32 H 0.086 0.914 33 H 0.096 0.904 34 H 0.133 0.867 35 H 0.106 0.894 36 H 0.098 0.902 37 H 0.130 0.870 38 H 0.103 0.897 39 H 0.095 0.905 40 H 0.112 0.888 41 H 0.085 0.915 42 H 0.108 0.892 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 6.884 -24.904 3.984 26.144 hybrid contribution -0.301 -0.711 -0.548 0.947 sum 6.582 -25.616 3.436 26.670 Atomic orbital electron populations 1.70955 1.06921 1.27912 1.55725 1.27338 0.97175 1.04555 0.99840 0.82567 0.73261 0.71194 0.77268 1.20238 1.21308 1.20566 1.20357 0.92061 0.87163 1.47794 0.92527 1.42330 1.04732 1.01466 1.90764 1.20858 0.94036 0.85245 0.96681 1.21564 0.92837 0.83209 0.99327 0.93225 1.22576 1.00478 0.99197 0.93366 1.22825 0.97144 0.92344 1.03223 1.22739 0.98527 0.97938 0.83178 1.48647 1.50102 1.18893 1.16467 1.20191 0.77237 0.88606 0.80747 1.90717 1.60983 1.59073 1.36259 1.22309 0.95683 0.93423 1.05812 0.82931 1.23336 1.02569 0.99086 0.91371 0.89338 1.22031 0.99141 0.90106 1.01390 1.22701 0.97225 1.00601 0.95034 1.22035 1.01331 0.90930 0.98095 1.23348 0.90060 1.00825 1.01071 0.89219 0.94497 0.80405 0.98391 0.96513 0.91393 0.90385 0.86728 0.89354 0.90246 0.86962 0.89735 0.90515 0.88768 0.91452 0.89177 0.90022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -62.83 13.70 21.65 0.30 -62.54 16 2 C -0.10 -6.00 5.50 84.86 0.47 -5.54 16 3 Si 1.13 54.75 29.92 68.60 2.05 56.81 16 4 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 5 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 6 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 7 C -0.34 -21.23 9.99 84.03 0.84 -20.39 16 8 H 0.06 3.51 7.83 -2.91 -0.02 3.49 16 9 N -0.75 -42.33 5.38 -343.45 -1.85 -44.17 16 10 C 0.16 7.81 5.63 86.38 0.49 8.30 16 11 C 0.14 5.10 2.96 45.34 0.13 5.23 16 12 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 13 C -0.12 -3.51 6.13 31.78 0.19 -3.31 16 14 C -0.12 -2.13 7.08 31.98 0.23 -1.91 16 15 C 0.10 1.84 6.76 86.79 0.59 2.42 16 16 N -0.61 -18.72 3.07 -787.24 -2.42 -21.14 16 17 C 0.54 18.41 7.45 87.66 0.65 19.06 16 18 O -0.59 -26.90 15.14 -3.06 -0.05 -26.94 16 19 C -0.15 -3.43 5.05 -11.54 -0.06 -3.49 16 20 H 0.15 2.32 7.12 -2.39 -0.02 2.30 16 21 C -0.14 -3.23 6.39 -10.08 -0.06 -3.30 16 22 H 0.09 2.56 7.78 -2.39 -0.02 2.55 16 23 C -0.09 -1.24 6.63 31.67 0.21 -1.03 16 24 C -0.12 -1.26 6.91 31.88 0.22 -1.04 16 25 C -0.09 -1.05 6.63 31.67 0.21 -0.84 16 26 C -0.13 -2.76 6.64 -10.07 -0.07 -2.82 16 27 H 0.09 2.27 8.14 -2.39 -0.02 2.26 16 28 H 0.24 15.81 6.77 -92.71 -0.63 15.18 16 29 H 0.36 20.62 6.38 -92.71 -0.59 20.03 16 30 H 0.00 -0.10 6.61 -2.39 -0.02 -0.12 16 31 H 0.02 0.83 8.07 -2.38 -0.02 0.81 16 32 H 0.07 2.23 7.80 -2.39 -0.02 2.21 16 33 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 34 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.09 1.41 8.14 -2.38 -0.02 1.39 16 36 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 37 H 0.11 1.32 6.98 -2.39 -0.02 1.31 16 38 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 41 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 43 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 Total: -1.00 -82.55 341.33 2.61 -79.93 By element: Atomic # 1 Polarization: 26.17 SS G_CDS: 0.54 Total: 26.71 kcal Atomic # 6 Polarization: -12.70 SS G_CDS: 4.04 Total: -8.66 kcal Atomic # 7 Polarization: -123.88 SS G_CDS: -3.97 Total: -127.85 kcal Atomic # 8 Polarization: -26.90 SS G_CDS: -0.05 Total: -26.94 kcal Atomic # 14 Polarization: 54.75 SS G_CDS: 2.05 Total: 56.81 kcal Total: -82.55 2.61 -79.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270027777.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.832 kcal (2) G-P(sol) polarization free energy of solvation -82.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds