Wall clock time and date at job start Tue Mar 31 2020 00:23:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86802 * 120.00294 * 2 1 4 4 H 1.48497 * 109.47057 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46868 * 299.99897 * 3 2 1 6 6 H 1.48498 * 109.47026 * 59.99368 * 3 2 1 7 7 C 1.38812 * 119.99560 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99726 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00496 * 0.02562 * 7 2 1 10 10 C 1.46493 * 120.00266 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47244 * 185.01381 * 10 9 7 12 12 H 1.08995 * 109.99863 * 306.60628 * 11 10 9 13 13 C 1.54314 * 109.77184 * 67.76004 * 11 10 9 14 14 C 1.55152 * 102.86582 * 141.88440 * 13 11 10 15 15 C 1.54910 * 101.58156 * 324.30461 * 14 13 11 16 16 N 1.47021 * 109.88288 * 185.50604 * 11 10 9 17 17 C 1.34777 * 125.64645 * 61.68100 * 16 11 10 18 18 O 1.21276 * 120.00235 * 355.11922 * 17 16 11 19 19 C 1.50704 * 119.99736 * 175.12155 * 17 16 11 20 20 C 1.52999 * 119.29295 * 250.23046 * 19 17 16 21 21 C 1.52995 * 60.37904 * 248.69269 * 20 19 17 22 22 H 1.09004 * 119.29418 * 111.30535 * 21 20 19 23 23 C 1.56188 * 117.02048 * 266.92470 * 21 20 19 24 24 C 1.54886 * 104.25410 * 87.80317 * 23 21 20 25 25 C 1.54264 * 117.41574 * 44.57044 * 19 17 16 26 26 H 0.97005 * 119.99577 * 0.02562 * 1 2 3 27 27 H 0.97005 * 119.99802 * 0.02562 * 9 7 2 28 28 H 1.09007 * 109.46882 * 65.01685 * 10 9 7 29 29 H 1.09001 * 109.47696 * 305.01901 * 10 9 7 30 30 H 1.08999 * 110.92574 * 23.46761 * 13 11 10 31 31 H 1.08999 * 110.74055 * 260.21750 * 13 11 10 32 32 H 1.08999 * 111.00588 * 206.22743 * 14 13 11 33 33 H 1.09004 * 111.03858 * 82.38893 * 14 13 11 34 34 H 1.09005 * 110.36346 * 278.17063 * 15 14 13 35 35 H 1.09003 * 110.46346 * 155.89277 * 15 14 13 36 36 H 1.08997 * 117.46861 * 356.29644 * 20 19 17 37 37 H 1.09007 * 117.46156 * 141.09894 * 20 19 17 38 38 H 1.08995 * 110.77935 * 328.94501 * 23 21 20 39 39 H 1.08994 * 110.24688 * 206.39433 * 23 21 20 40 40 H 1.09000 * 110.75804 * 203.36501 * 24 23 21 41 41 H 1.08997 * 110.91705 * 80.06633 * 24 23 21 42 42 H 1.08994 * 110.48774 * 236.26526 * 25 19 17 43 43 H 1.08999 * 110.48413 * 358.90337 * 25 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8915 2.3965 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0005 11 6 1.0684 -4.8170 -0.1255 12 1 0.3016 -4.7383 0.6450 13 6 0.4154 -4.7965 -1.5235 14 6 0.3150 -6.3032 -1.8800 15 6 1.6135 -6.8602 -1.2449 16 7 1.7795 -6.0971 0.0055 17 6 2.4647 -6.5074 1.0911 18 8 2.6059 -5.7614 2.0368 19 6 3.0555 -7.8933 1.1298 20 6 2.4491 -8.9397 2.0669 21 6 3.8489 -8.3910 2.3507 22 1 4.0060 -7.7553 3.2221 23 6 5.0566 -9.1932 1.7699 24 6 5.2509 -8.6129 0.3470 25 6 3.7954 -8.3855 -0.1312 26 1 -0.4850 0.8401 -0.0004 27 1 0.3555 -2.3881 -0.0002 28 1 2.6155 -3.7544 0.9321 29 1 2.7503 -3.6767 -0.8411 30 1 1.0469 -4.2718 -2.2405 31 1 -0.5751 -4.3436 -1.4804 32 1 0.3143 -6.4500 -2.9601 33 1 -0.5669 -6.7549 -1.4258 34 1 2.4624 -6.6919 -1.9076 35 1 1.5065 -7.9233 -1.0291 36 1 1.6406 -8.6183 2.7234 37 1 2.3756 -9.9627 1.6978 38 1 4.8258 -10.2573 1.7197 39 1 5.9472 -9.0251 2.3753 40 1 5.7612 -9.3298 -0.2962 41 1 5.7976 -7.6706 0.3824 42 1 3.3608 -9.3190 -0.4884 43 1 3.7647 -7.6259 -0.9123 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270245137.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:23:30 Heat of formation + Delta-G solvation = 3.934718 kcal Electronic energy + Delta-G solvation = -22383.979572 eV Core-core repulsion = 19236.939036 eV Total energy + Delta-G solvation = -3147.040536 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.69685 -38.82268 -36.95121 -34.45017 -31.84427 -31.71454 -31.23568 -29.11364 -27.99790 -25.17133 -24.08354 -22.86040 -22.06901 -21.24339 -20.79281 -19.91291 -18.52613 -17.10826 -16.55813 -16.35785 -15.64004 -15.03870 -14.45983 -14.37416 -13.89665 -13.60864 -13.42798 -13.26483 -13.18015 -13.10074 -12.78203 -12.59789 -12.19794 -11.79797 -11.48878 -11.41240 -11.23678 -11.12796 -10.92903 -10.86888 -10.80351 -10.52976 -10.49547 -10.34689 -9.97302 -9.86971 -9.70019 -9.41589 -8.78003 -8.36907 -6.83289 -5.69914 -2.97577 2.67278 3.08250 3.48140 3.53515 3.54732 3.56515 4.20344 4.44288 4.48892 4.62078 4.66321 4.70854 4.97517 5.02530 5.04772 5.13533 5.20158 5.33771 5.40839 5.46226 5.47843 5.52814 5.62141 5.62926 5.65080 5.72271 5.84564 5.85245 5.86345 5.97733 6.02654 6.11907 6.14199 6.18092 6.24047 6.46669 6.62426 6.87557 7.10095 7.75640 7.79085 8.42193 8.49805 9.60143 10.17403 10.53194 11.53369 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.023237 B = 0.004246 C = 0.003898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.676377 B = 6592.728336 C = 7181.816110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.015 4.015 3 Si 0.907 3.093 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.232 4.232 8 H 0.069 0.931 9 N -0.729 5.729 10 C 0.146 3.854 11 C 0.131 3.869 12 H 0.074 0.926 13 C -0.120 4.120 14 C -0.137 4.137 15 C 0.102 3.898 16 N -0.607 5.607 17 C 0.566 3.434 18 O -0.528 6.528 19 C -0.173 4.173 20 C -0.126 4.126 21 C -0.128 4.128 22 H 0.122 0.878 23 C -0.095 4.095 24 C -0.124 4.124 25 C -0.090 4.090 26 H 0.254 0.746 27 H 0.383 0.617 28 H 0.034 0.966 29 H 0.019 0.981 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.075 0.925 36 H 0.101 0.899 37 H 0.100 0.900 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.073 0.927 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.972 -23.512 -2.890 24.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.211 4.211 3 Si 0.738 3.262 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.363 4.363 8 H 0.087 0.913 9 N -0.373 5.373 10 C 0.017 3.983 11 C 0.028 3.972 12 H 0.092 0.908 13 C -0.158 4.158 14 C -0.175 4.175 15 C -0.021 4.021 16 N -0.342 5.342 17 C 0.354 3.646 18 O -0.404 6.404 19 C -0.176 4.176 20 C -0.163 4.163 21 C -0.147 4.147 22 H 0.140 0.860 23 C -0.132 4.132 24 C -0.162 4.162 25 C -0.127 4.127 26 H 0.063 0.937 27 H 0.216 0.784 28 H 0.052 0.948 29 H 0.037 0.963 30 H 0.100 0.900 31 H 0.102 0.898 32 H 0.099 0.901 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.093 0.907 36 H 0.119 0.881 37 H 0.118 0.882 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.090 0.910 42 H 0.092 0.908 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 5.251 -23.003 -2.314 23.708 hybrid contribution 0.045 1.078 -0.042 1.079 sum 5.297 -21.925 -2.356 22.679 Atomic orbital electron populations 1.69673 1.05058 1.25395 1.58306 1.24711 0.95534 0.97569 1.03284 0.86109 0.78809 0.84151 0.77131 1.20602 1.21914 1.21885 1.19268 0.91042 0.84046 1.41976 0.91258 1.42214 1.05730 0.99766 1.89613 1.20981 0.93373 0.85066 0.98848 1.21818 0.94546 0.83231 0.97603 0.90770 1.22656 1.02124 0.95213 0.95774 1.22830 0.97071 0.96706 1.00848 1.22418 0.97910 0.96039 0.85761 1.48388 1.52382 1.19012 1.14375 1.18969 0.77495 0.86794 0.81328 1.90744 1.58555 1.55281 1.35825 1.22297 1.06262 0.94165 0.94853 1.23099 0.96401 0.96949 0.99871 1.23800 0.91156 1.01552 0.98170 0.85972 1.22310 0.96542 0.98621 0.95732 1.22676 0.96421 1.01271 0.95823 1.22099 0.94416 1.01097 0.95078 0.93661 0.78382 0.94774 0.96288 0.89950 0.89835 0.90060 0.90858 0.91441 0.90661 0.88061 0.88188 0.91142 0.91020 0.91065 0.91027 0.90802 0.90369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.04 13.06 55.49 0.72 -28.31 16 2 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 3 Si 0.91 23.26 29.55 -169.99 -5.02 18.23 16 4 H -0.28 -7.02 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.43 7.11 56.52 0.40 -7.02 16 6 H -0.29 -7.52 7.11 56.52 0.40 -7.11 16 7 C -0.23 -6.86 9.99 -15.06 -0.15 -7.01 16 8 H 0.07 2.02 7.83 -52.48 -0.41 1.61 16 9 N -0.73 -19.63 5.42 -59.91 -0.32 -19.95 16 10 C 0.15 3.32 5.66 -4.04 -0.02 3.30 16 11 C 0.13 2.38 2.95 -66.96 -0.20 2.18 16 12 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 13 C -0.12 -1.80 6.24 -24.90 -0.16 -1.96 16 14 C -0.14 -1.48 7.08 -24.58 -0.17 -1.65 16 15 C 0.10 1.13 5.19 -2.53 -0.01 1.12 16 16 N -0.61 -9.40 3.07 -163.02 -0.50 -9.90 16 17 C 0.57 9.45 7.31 -10.98 -0.08 9.37 16 18 O -0.53 -11.27 15.58 5.56 0.09 -11.18 16 19 C -0.17 -2.08 2.18 -154.54 -0.34 -2.41 16 20 C -0.13 -1.26 9.82 -26.73 -0.26 -1.52 16 21 C -0.13 -1.41 6.71 -88.46 -0.59 -2.01 16 22 H 0.12 1.54 8.14 -51.93 -0.42 1.12 16 23 C -0.09 -0.80 6.66 -24.03 -0.16 -0.96 16 24 C -0.12 -1.07 6.91 -24.74 -0.17 -1.24 16 25 C -0.09 -0.83 4.86 -25.07 -0.12 -0.95 16 26 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 27 H 0.38 10.60 7.62 -40.82 -0.31 10.29 16 28 H 0.03 0.88 6.55 -51.93 -0.34 0.54 16 29 H 0.02 0.44 8.01 -51.93 -0.42 0.02 16 30 H 0.08 1.33 7.77 -51.93 -0.40 0.93 16 31 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 32 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.07 0.70 7.12 -51.93 -0.37 0.33 16 35 H 0.08 0.68 6.89 -51.93 -0.36 0.32 16 36 H 0.10 1.09 8.14 -51.93 -0.42 0.66 16 37 H 0.10 0.76 8.14 -51.92 -0.42 0.34 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.08 0.77 5.60 -51.93 -0.29 0.48 16 LS Contribution 338.45 15.07 5.10 5.10 Total: -1.00 -34.42 338.45 -9.58 -44.00 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -7.11 Total: 6.32 kcal Atomic # 6 Polarization: -1.77 SS G_CDS: -2.54 Total: -4.31 kcal Atomic # 7 Polarization: -58.07 SS G_CDS: -0.10 Total: -58.17 kcal Atomic # 8 Polarization: -11.27 SS G_CDS: 0.09 Total: -11.18 kcal Atomic # 14 Polarization: 23.26 SS G_CDS: -5.02 Total: 18.23 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -34.42 -9.58 -44.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270245137.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.938 kcal (2) G-P(sol) polarization free energy of solvation -34.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.003 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds