Wall clock time and date at job start Tue Mar 31 2020 00:23:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86802 * 120.00294 * 2 1 4 4 H 1.48497 * 109.47057 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46868 * 299.99897 * 3 2 1 6 6 H 1.48498 * 109.47026 * 59.99368 * 3 2 1 7 7 C 1.38812 * 119.99560 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99726 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00496 * 0.02562 * 7 2 1 10 10 C 1.46493 * 120.00266 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47244 * 185.01381 * 10 9 7 12 12 H 1.08995 * 109.99863 * 306.60628 * 11 10 9 13 13 C 1.54314 * 109.77184 * 67.76004 * 11 10 9 14 14 C 1.55152 * 102.86582 * 141.88440 * 13 11 10 15 15 C 1.54910 * 101.58156 * 324.30461 * 14 13 11 16 16 N 1.47021 * 109.88288 * 185.50604 * 11 10 9 17 17 C 1.34777 * 125.64645 * 61.68100 * 16 11 10 18 18 O 1.21276 * 120.00235 * 355.11922 * 17 16 11 19 19 C 1.50704 * 119.99736 * 175.12155 * 17 16 11 20 20 C 1.52999 * 119.29295 * 250.23046 * 19 17 16 21 21 C 1.52995 * 60.37904 * 248.69269 * 20 19 17 22 22 H 1.09004 * 119.29418 * 111.30535 * 21 20 19 23 23 C 1.56188 * 117.02048 * 266.92470 * 21 20 19 24 24 C 1.54886 * 104.25410 * 87.80317 * 23 21 20 25 25 C 1.54264 * 117.41574 * 44.57044 * 19 17 16 26 26 H 0.97005 * 119.99577 * 0.02562 * 1 2 3 27 27 H 0.97005 * 119.99802 * 0.02562 * 9 7 2 28 28 H 1.09007 * 109.46882 * 65.01685 * 10 9 7 29 29 H 1.09001 * 109.47696 * 305.01901 * 10 9 7 30 30 H 1.08999 * 110.92574 * 23.46761 * 13 11 10 31 31 H 1.08999 * 110.74055 * 260.21750 * 13 11 10 32 32 H 1.08999 * 111.00588 * 206.22743 * 14 13 11 33 33 H 1.09004 * 111.03858 * 82.38893 * 14 13 11 34 34 H 1.09005 * 110.36346 * 278.17063 * 15 14 13 35 35 H 1.09003 * 110.46346 * 155.89277 * 15 14 13 36 36 H 1.08997 * 117.46861 * 356.29644 * 20 19 17 37 37 H 1.09007 * 117.46156 * 141.09894 * 20 19 17 38 38 H 1.08995 * 110.77935 * 328.94501 * 23 21 20 39 39 H 1.08994 * 110.24688 * 206.39433 * 23 21 20 40 40 H 1.09000 * 110.75804 * 203.36501 * 24 23 21 41 41 H 1.08997 * 110.91705 * 80.06633 * 24 23 21 42 42 H 1.08994 * 110.48774 * 236.26526 * 25 19 17 43 43 H 1.08999 * 110.48413 * 358.90337 * 25 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8915 2.3965 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0005 11 6 1.0684 -4.8170 -0.1255 12 1 0.3016 -4.7383 0.6450 13 6 0.4154 -4.7965 -1.5235 14 6 0.3150 -6.3032 -1.8800 15 6 1.6135 -6.8602 -1.2449 16 7 1.7795 -6.0971 0.0055 17 6 2.4647 -6.5074 1.0911 18 8 2.6059 -5.7614 2.0368 19 6 3.0555 -7.8933 1.1298 20 6 2.4491 -8.9397 2.0669 21 6 3.8489 -8.3910 2.3507 22 1 4.0060 -7.7553 3.2221 23 6 5.0566 -9.1932 1.7699 24 6 5.2509 -8.6129 0.3470 25 6 3.7954 -8.3855 -0.1312 26 1 -0.4850 0.8401 -0.0004 27 1 0.3555 -2.3881 -0.0002 28 1 2.6155 -3.7544 0.9321 29 1 2.7503 -3.6767 -0.8411 30 1 1.0469 -4.2718 -2.2405 31 1 -0.5751 -4.3436 -1.4804 32 1 0.3143 -6.4500 -2.9601 33 1 -0.5669 -6.7549 -1.4258 34 1 2.4624 -6.6919 -1.9076 35 1 1.5065 -7.9233 -1.0291 36 1 1.6406 -8.6183 2.7234 37 1 2.3756 -9.9627 1.6978 38 1 4.8258 -10.2573 1.7197 39 1 5.9472 -9.0251 2.3753 40 1 5.7612 -9.3298 -0.2962 41 1 5.7976 -7.6706 0.3824 42 1 3.3608 -9.3190 -0.4884 43 1 3.7647 -7.6259 -0.9123 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270245137.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:23:29 Heat of formation + Delta-G solvation = -18.580195 kcal Electronic energy + Delta-G solvation = -22384.955892 eV Core-core repulsion = 19236.939036 eV Total energy + Delta-G solvation = -3148.016856 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -41.79014 -39.89315 -38.27745 -36.47017 -33.57418 -32.63656 -32.55704 -30.60747 -28.99083 -26.80890 -25.53994 -24.16327 -23.48877 -22.20749 -21.71799 -21.06682 -19.83234 -19.04094 -17.79454 -17.60217 -16.85567 -16.42942 -15.91981 -15.63625 -15.38331 -15.10038 -15.01302 -14.54542 -14.24586 -14.12619 -13.95041 -13.75099 -13.55585 -13.06444 -12.96584 -12.80652 -12.74172 -12.30137 -12.16238 -11.99756 -11.94763 -11.88142 -11.83012 -11.74610 -11.54968 -11.34743 -11.02560 -10.69066 -10.65530 -9.70086 -9.08866 -8.01666 -5.32056 1.41941 1.44422 1.46669 1.54648 1.88154 2.51559 2.64186 3.30334 3.38403 3.52280 3.60029 3.66354 3.83444 3.86954 3.94782 4.09065 4.22953 4.25685 4.31019 4.41677 4.45739 4.49046 4.65479 4.70401 4.73282 4.78985 4.83125 4.90940 4.97543 4.99410 5.05070 5.10048 5.13427 5.17171 5.20780 5.29100 5.33449 5.38616 5.46081 5.48013 6.19734 6.55185 7.14418 7.26160 7.96382 8.25028 9.21860 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.023237 B = 0.004246 C = 0.003898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.676377 B = 6592.728336 C = 7181.816110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.069 4.069 3 Si 0.978 3.022 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.291 1.291 7 C -0.253 4.253 8 H 0.066 0.934 9 N -0.736 5.736 10 C 0.154 3.846 11 C 0.136 3.864 12 H 0.048 0.952 13 C -0.117 4.117 14 C -0.120 4.120 15 C 0.097 3.903 16 N -0.606 5.606 17 C 0.553 3.447 18 O -0.593 6.593 19 C -0.184 4.184 20 C -0.104 4.104 21 C -0.142 4.142 22 H 0.090 0.910 23 C -0.085 4.085 24 C -0.125 4.125 25 C -0.083 4.083 26 H 0.254 0.746 27 H 0.376 0.624 28 H -0.002 1.002 29 H 0.020 0.980 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.114 0.886 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.109 0.891 36 H 0.085 0.915 37 H 0.140 0.860 38 H 0.099 0.901 39 H 0.071 0.929 40 H 0.100 0.900 41 H 0.047 0.953 42 H 0.109 0.891 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.516 -26.371 -4.926 27.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.615 5.615 2 C -0.261 4.261 3 Si 0.806 3.194 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.218 1.218 7 C -0.384 4.384 8 H 0.084 0.916 9 N -0.379 5.379 10 C 0.026 3.974 11 C 0.032 3.968 12 H 0.066 0.934 13 C -0.155 4.155 14 C -0.157 4.157 15 C -0.024 4.024 16 N -0.339 5.339 17 C 0.343 3.657 18 O -0.474 6.474 19 C -0.187 4.187 20 C -0.141 4.141 21 C -0.161 4.161 22 H 0.108 0.892 23 C -0.122 4.122 24 C -0.162 4.162 25 C -0.120 4.120 26 H 0.063 0.937 27 H 0.208 0.792 28 H 0.016 0.984 29 H 0.037 0.963 30 H 0.089 0.911 31 H 0.095 0.905 32 H 0.133 0.867 33 H 0.103 0.897 34 H 0.099 0.901 35 H 0.127 0.873 36 H 0.104 0.896 37 H 0.158 0.842 38 H 0.117 0.883 39 H 0.090 0.910 40 H 0.118 0.882 41 H 0.065 0.935 42 H 0.128 0.872 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 5.806 -25.910 -4.391 26.914 hybrid contribution -0.118 2.003 0.664 2.113 sum 5.688 -23.908 -3.727 24.856 Atomic orbital electron populations 1.69821 1.06506 1.26286 1.58934 1.25582 0.96530 1.01015 1.03000 0.85027 0.77928 0.79372 0.77111 1.19562 1.20954 1.21763 1.19581 0.91184 0.85412 1.42272 0.91612 1.42325 1.05495 1.00649 1.89480 1.20930 0.94095 0.85587 0.96748 1.21556 0.92987 0.83212 0.99077 0.93401 1.22563 1.00919 0.98876 0.93115 1.22850 0.97376 0.92515 1.03006 1.22785 0.98625 0.97282 0.83714 1.48528 1.51366 1.18152 1.15817 1.20004 0.76791 0.88374 0.80512 1.90705 1.60963 1.57514 1.38216 1.22355 1.07449 0.91828 0.97100 1.23209 0.94914 0.97922 0.98032 1.23915 0.93288 1.01943 0.96982 0.89153 1.22327 0.95066 0.99597 0.95253 1.22697 0.96126 1.00937 0.96450 1.22166 0.94328 1.02291 0.93185 0.93673 0.79170 0.98386 0.96253 0.91088 0.90502 0.86736 0.89670 0.90075 0.87255 0.89624 0.84218 0.88286 0.91034 0.88195 0.93457 0.87235 0.91069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.17 13.06 21.65 0.28 -60.89 16 2 C -0.07 -4.16 5.50 84.86 0.47 -3.69 16 3 Si 0.98 48.45 29.55 68.60 2.03 50.48 16 4 H -0.27 -12.87 7.11 99.48 0.71 -12.16 16 5 H -0.28 -13.58 7.11 99.48 0.71 -12.88 16 6 H -0.29 -14.32 7.11 99.48 0.71 -13.61 16 7 C -0.25 -15.47 9.99 84.03 0.84 -14.63 16 8 H 0.07 3.97 7.83 -2.91 -0.02 3.95 16 9 N -0.74 -41.71 5.42 -343.45 -1.86 -43.57 16 10 C 0.15 7.48 5.66 86.38 0.49 7.97 16 11 C 0.14 5.17 2.95 45.34 0.13 5.31 16 12 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 13 C -0.12 -3.49 6.24 31.78 0.20 -3.29 16 14 C -0.12 -2.22 7.08 31.98 0.23 -2.00 16 15 C 0.10 1.87 5.19 86.86 0.45 2.32 16 16 N -0.61 -18.86 3.07 -788.06 -2.42 -21.27 16 17 C 0.55 19.10 7.31 87.66 0.64 19.74 16 18 O -0.59 -27.50 15.58 -3.02 -0.05 -27.54 16 19 C -0.18 -4.21 2.18 -52.20 -0.11 -4.32 16 20 C -0.10 -1.85 9.82 30.59 0.30 -1.55 16 21 C -0.14 -3.07 6.71 -9.39 -0.06 -3.13 16 22 H 0.09 2.49 8.14 -2.38 -0.02 2.47 16 23 C -0.09 -1.21 6.66 32.35 0.22 -0.99 16 24 C -0.12 -1.80 6.91 31.88 0.22 -1.58 16 25 C -0.08 -1.25 4.86 31.67 0.15 -1.09 16 26 H 0.25 15.40 8.31 -92.70 -0.77 14.63 16 27 H 0.38 21.95 7.62 -92.70 -0.71 21.25 16 28 H 0.00 -0.10 6.55 -2.38 -0.02 -0.11 16 29 H 0.02 0.93 8.01 -2.39 -0.02 0.92 16 30 H 0.07 2.29 7.77 -2.39 -0.02 2.27 16 31 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 32 H 0.11 1.46 8.14 -2.39 -0.02 1.45 16 33 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.08 1.40 7.12 -2.38 -0.02 1.39 16 35 H 0.11 1.44 6.89 -2.39 -0.02 1.43 16 36 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.14 1.41 8.14 -2.38 -0.02 1.39 16 38 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.07 1.19 5.60 -2.39 -0.01 1.17 16 Total: -1.00 -80.49 338.45 2.43 -78.06 By element: Atomic # 1 Polarization: 25.37 SS G_CDS: 0.29 Total: 25.66 kcal Atomic # 6 Polarization: -5.09 SS G_CDS: 4.16 Total: -0.93 kcal Atomic # 7 Polarization: -121.73 SS G_CDS: -3.99 Total: -125.73 kcal Atomic # 8 Polarization: -27.50 SS G_CDS: -0.05 Total: -27.54 kcal Atomic # 14 Polarization: 48.45 SS G_CDS: 2.03 Total: 50.48 kcal Total: -80.49 2.43 -78.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270245137.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.479 kcal (2) G-P(sol) polarization free energy of solvation -80.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds