Wall clock time and date at job start Mon Mar 30 2020 23:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 119.99760 * 2 1 4 4 H 1.48504 * 109.46998 * 239.99811 * 3 2 1 5 5 H 1.48497 * 109.47480 * 359.97438 * 3 2 1 6 6 H 1.48508 * 109.47407 * 120.00020 * 3 2 1 7 7 C 1.38814 * 120.00340 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00223 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99763 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99902 * 174.60105 * 9 7 2 11 11 C 1.52994 * 110.01949 * 301.45913 * 10 9 7 12 12 N 1.46494 * 109.47433 * 303.90725 * 11 10 9 13 13 C 1.34776 * 120.00285 * 175.12599 * 12 11 10 14 14 O 1.21280 * 119.99990 * 359.97438 * 13 12 11 15 15 C 1.50703 * 120.00112 * 179.97438 * 13 12 11 16 16 H 1.08995 * 115.55353 * 325.72176 * 15 13 12 17 17 C 1.53009 * 117.49665 * 111.39279 * 15 13 12 18 18 C 1.52992 * 117.49977 * 180.02562 * 15 13 12 19 19 C 1.52996 * 138.58800 * 23.40597 * 18 15 13 20 20 C 1.52989 * 138.59057 * 121.61875 * 18 15 13 21 21 C 1.54262 * 110.07242 * 62.88189 * 10 9 7 22 22 C 1.54891 * 104.19787 * 95.69617 * 21 10 9 23 23 C 1.54889 * 102.75105 * 37.93982 * 22 21 10 24 24 C 1.53877 * 110.03189 * 180.02562 * 10 9 7 25 25 H 0.96997 * 119.99887 * 0.02562 * 1 2 3 26 26 H 0.97005 * 120.00169 * 354.60534 * 9 7 2 27 27 H 1.08999 * 109.47407 * 183.89833 * 11 10 9 28 28 H 1.09005 * 109.46500 * 63.90320 * 11 10 9 29 29 H 0.97006 * 120.00134 * 355.12035 * 12 11 10 30 30 H 1.08994 * 117.49736 * 214.98201 * 17 15 13 31 31 H 1.08998 * 117.49538 * 0.02562 * 17 15 13 32 32 H 1.09000 * 117.49806 * 238.38530 * 19 18 15 33 33 H 1.08998 * 117.50100 * 23.39856 * 19 18 15 34 34 H 1.08999 * 117.49671 * 336.59916 * 20 18 15 35 35 H 1.08999 * 117.50053 * 121.59405 * 20 18 15 36 36 H 1.09000 * 110.48889 * 214.37433 * 21 10 9 37 37 H 1.09003 * 110.48535 * 337.01886 * 21 10 9 38 38 H 1.09002 * 110.75213 * 279.62562 * 22 21 10 39 39 H 1.09001 * 110.75895 * 156.25987 * 22 21 10 40 40 H 1.08994 * 110.49164 * 203.38018 * 23 22 21 41 41 H 1.09007 * 110.48262 * 80.73267 * 23 22 21 42 42 H 1.09006 * 110.03597 * 359.95115 * 24 10 9 43 43 H 1.09002 * 110.03274 * 121.38228 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0104 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 2.0534 -3.6540 -0.1183 11 6 2.8624 -3.6732 -1.4167 12 7 1.9683 -3.4362 -2.5527 13 6 2.4757 -3.3116 -3.7951 14 8 3.6726 -3.3952 -3.9725 15 6 1.5559 -3.0685 -4.9638 16 1 0.5801 -3.5502 -4.9023 17 6 1.6268 -1.7007 -5.6460 18 6 2.1928 -2.9366 -6.3486 19 6 3.4749 -3.3617 -7.0671 20 6 2.1135 -3.6154 -7.7174 21 6 2.9917 -3.8409 1.0918 22 6 2.1745 -4.7158 2.0746 23 6 1.4385 -5.6965 1.1283 24 6 1.0660 -4.8339 -0.0940 25 1 -0.4850 0.8400 -0.0004 26 1 0.3588 -2.3899 0.0791 27 1 3.3446 -4.6441 -1.5301 28 1 3.6219 -2.8920 -1.3830 29 1 1.0111 -3.3691 -2.4108 30 1 0.6977 -1.2828 -6.0334 31 1 2.3390 -0.9770 -5.2496 32 1 4.0975 -2.5751 -7.4932 33 1 4.0119 -4.2235 -6.6707 34 1 1.7547 -4.6441 -7.7489 35 1 1.8400 -2.9957 -8.5714 36 1 3.9042 -4.3556 0.7912 37 1 3.2274 -2.8775 1.5442 38 1 1.4614 -4.1079 2.6315 39 1 2.8356 -5.2558 2.7525 40 1 0.5408 -6.0874 1.6072 41 1 2.1002 -6.5110 0.8334 42 1 0.0453 -4.4647 0.0071 43 1 1.1625 -5.4204 -1.0076 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270798624.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:55:46 Heat of formation + Delta-G solvation = 23.559851 kcal Electronic energy + Delta-G solvation = -22322.579753 eV Core-core repulsion = 19176.390227 eV Total energy + Delta-G solvation = -3146.189526 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.65441 -38.45455 -37.04327 -33.99439 -33.26216 -32.45779 -30.59423 -28.27287 -27.88679 -25.04002 -23.52629 -22.62170 -22.34235 -20.50920 -19.80955 -19.06397 -18.36921 -16.98757 -16.68646 -15.80018 -15.26167 -14.95613 -14.77788 -14.59735 -14.16703 -14.12718 -13.61035 -13.31607 -12.81731 -12.65961 -12.16203 -11.96458 -11.53573 -11.45140 -11.40108 -11.10091 -10.76847 -10.72752 -10.63701 -10.53084 -10.24473 -10.13797 -10.08935 -9.97993 -9.88606 -9.85718 -9.63819 -9.26913 -8.89106 -8.34723 -7.00465 -5.80157 -3.08870 2.96475 3.42743 3.47352 3.47525 3.49759 3.87745 4.08493 4.43711 4.57374 4.92236 4.97224 5.11220 5.12982 5.23867 5.37438 5.55349 5.57762 5.62245 5.68775 5.70421 5.73205 5.79400 5.86261 5.94523 5.95478 5.97211 6.09266 6.14955 6.18809 6.21361 6.26982 6.31566 6.45318 6.57105 6.62942 6.77601 6.83195 7.02226 7.15880 7.70835 8.16433 8.38560 8.81670 9.50347 10.04230 10.39701 11.41889 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.012524 B = 0.006288 C = 0.004648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2235.189804 B = 4451.512462 C = 6023.159682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.008 4.008 3 Si 0.900 3.100 4 H -0.287 1.287 5 H -0.292 1.292 6 H -0.287 1.287 7 C -0.231 4.231 8 H 0.068 0.932 9 N -0.710 5.710 10 C 0.189 3.811 11 C 0.121 3.879 12 N -0.696 5.696 13 C 0.537 3.463 14 O -0.553 6.553 15 C -0.135 4.135 16 H 0.120 0.880 17 C -0.097 4.097 18 C -0.203 4.203 19 C -0.114 4.114 20 C -0.133 4.133 21 C -0.132 4.132 22 C -0.117 4.117 23 C -0.120 4.120 24 C -0.126 4.126 25 H 0.255 0.745 26 H 0.384 0.616 27 H 0.049 0.951 28 H 0.066 0.934 29 H 0.402 0.598 30 H 0.104 0.896 31 H 0.102 0.898 32 H 0.094 0.906 33 H 0.098 0.902 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.052 0.948 37 H 0.078 0.922 38 H 0.067 0.933 39 H 0.054 0.946 40 H 0.057 0.943 41 H 0.058 0.942 42 H 0.068 0.932 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.871 -10.053 -7.440 12.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.204 4.204 3 Si 0.732 3.268 4 H -0.213 1.213 5 H -0.218 1.218 6 H -0.213 1.213 7 C -0.363 4.363 8 H 0.086 0.914 9 N -0.351 5.351 10 C 0.097 3.903 11 C -0.005 4.005 12 N -0.345 5.345 13 C 0.323 3.677 14 O -0.431 6.431 15 C -0.156 4.156 16 H 0.138 0.862 17 C -0.135 4.135 18 C -0.203 4.203 19 C -0.151 4.151 20 C -0.170 4.170 21 C -0.172 4.172 22 C -0.155 4.155 23 C -0.158 4.158 24 C -0.164 4.164 25 H 0.064 0.936 26 H 0.219 0.781 27 H 0.067 0.933 28 H 0.084 0.916 29 H 0.237 0.763 30 H 0.122 0.878 31 H 0.120 0.880 32 H 0.112 0.888 33 H 0.116 0.884 34 H 0.112 0.888 35 H 0.114 0.886 36 H 0.070 0.930 37 H 0.097 0.903 38 H 0.086 0.914 39 H 0.073 0.927 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.087 0.913 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.817 -9.955 -7.548 12.624 hybrid contribution -0.375 1.116 0.222 1.198 sum 1.442 -8.838 -7.327 11.570 Atomic orbital electron populations 1.69637 1.04978 1.25686 1.57708 1.24666 0.95399 0.97436 1.02903 0.86373 0.78638 0.83913 0.77905 1.21343 1.21784 1.21329 1.19033 0.90945 0.83864 1.42418 0.91389 1.42531 1.05942 0.99423 1.87248 1.20458 0.91309 0.87191 0.91380 1.21856 0.93191 0.99374 0.86075 1.45653 1.11427 1.71434 1.05962 1.19537 0.88158 0.76565 0.83486 1.90634 1.15727 1.51450 1.85334 1.21952 0.99892 1.03180 0.90600 0.86248 1.22642 1.02204 0.89377 0.99243 1.21157 1.04368 1.03087 0.91716 1.22537 0.89629 1.02631 1.00255 1.22724 1.00797 1.00540 0.92909 1.22826 0.97316 1.00278 0.96784 1.22387 0.98752 0.97073 0.97243 1.22286 0.99576 0.97628 0.96335 1.22414 0.99846 0.96351 0.97758 0.93558 0.78129 0.93317 0.91610 0.76317 0.87764 0.87983 0.88794 0.88375 0.88802 0.88611 0.92958 0.90308 0.91400 0.92747 0.92371 0.92314 0.91299 0.92108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.68 13.07 55.49 0.73 -25.95 16 2 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 3 Si 0.90 22.19 29.55 -169.99 -5.02 17.17 16 4 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 6 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 7 C -0.23 -5.99 8.39 -15.06 -0.13 -6.12 16 8 H 0.07 1.78 7.23 -52.49 -0.38 1.40 16 9 N -0.71 -15.94 4.76 -46.20 -0.22 -16.16 16 10 C 0.19 3.43 0.68 -130.70 -0.09 3.35 16 11 C 0.12 2.28 3.99 -4.05 -0.02 2.26 16 12 N -0.70 -12.61 5.10 -60.30 -0.31 -12.91 16 13 C 0.54 9.99 7.61 -10.98 -0.08 9.91 16 14 O -0.55 -11.94 16.24 5.56 0.09 -11.85 16 15 C -0.14 -2.06 6.19 -91.77 -0.57 -2.62 16 16 H 0.12 1.54 8.14 -51.93 -0.42 1.12 16 17 C -0.10 -1.41 10.24 -26.71 -0.27 -1.68 16 18 C -0.20 -2.85 5.05 -154.51 -0.78 -3.63 16 19 C -0.11 -1.48 10.16 -26.74 -0.27 -1.75 16 20 C -0.13 -1.46 10.53 -26.74 -0.28 -1.74 16 21 C -0.13 -2.28 5.94 -25.07 -0.15 -2.43 16 22 C -0.12 -1.76 6.91 -24.74 -0.17 -1.93 16 23 C -0.12 -1.64 6.83 -25.12 -0.17 -1.81 16 24 C -0.13 -1.92 5.80 -25.66 -0.15 -2.07 16 25 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 26 H 0.38 9.24 7.28 -40.82 -0.30 8.94 16 27 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.07 1.43 7.49 -51.93 -0.39 1.04 16 29 H 0.40 6.98 8.00 -40.82 -0.33 6.65 16 30 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 31 H 0.10 1.64 8.14 -51.93 -0.42 1.21 16 32 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 34 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.05 0.83 7.85 -51.93 -0.41 0.42 16 37 H 0.08 1.56 7.12 -51.93 -0.37 1.19 16 38 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.07 1.09 7.44 -51.93 -0.39 0.70 16 43 H 0.06 0.86 7.55 -51.93 -0.39 0.47 16 LS Contribution 349.83 15.07 5.27 5.27 Total: -1.00 -29.86 349.83 -9.85 -39.70 By element: Atomic # 1 Polarization: 22.47 SS G_CDS: -7.16 Total: 15.32 kcal Atomic # 6 Polarization: -7.36 SS G_CDS: -3.23 Total: -10.58 kcal Atomic # 7 Polarization: -55.22 SS G_CDS: 0.20 Total: -55.02 kcal Atomic # 8 Polarization: -11.94 SS G_CDS: 0.09 Total: -11.85 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -29.86 -9.85 -39.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270798624.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.261 kcal (2) G-P(sol) polarization free energy of solvation -29.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds