Wall clock time and date at job start Mon Mar 30 2020 23:55:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 119.99760 * 2 1 4 4 H 1.48504 * 109.46998 * 239.99811 * 3 2 1 5 5 H 1.48497 * 109.47480 * 359.97438 * 3 2 1 6 6 H 1.48508 * 109.47407 * 120.00020 * 3 2 1 7 7 C 1.38814 * 120.00340 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00223 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99763 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99902 * 174.60105 * 9 7 2 11 11 C 1.52994 * 110.01949 * 301.45913 * 10 9 7 12 12 N 1.46494 * 109.47433 * 303.90725 * 11 10 9 13 13 C 1.34776 * 120.00285 * 175.12599 * 12 11 10 14 14 O 1.21280 * 119.99990 * 359.97438 * 13 12 11 15 15 C 1.50703 * 120.00112 * 179.97438 * 13 12 11 16 16 H 1.08995 * 115.55353 * 325.72176 * 15 13 12 17 17 C 1.53009 * 117.49665 * 111.39279 * 15 13 12 18 18 C 1.52992 * 117.49977 * 180.02562 * 15 13 12 19 19 C 1.52996 * 138.58800 * 23.40597 * 18 15 13 20 20 C 1.52989 * 138.59057 * 121.61875 * 18 15 13 21 21 C 1.54262 * 110.07242 * 62.88189 * 10 9 7 22 22 C 1.54891 * 104.19787 * 95.69617 * 21 10 9 23 23 C 1.54889 * 102.75105 * 37.93982 * 22 21 10 24 24 C 1.53877 * 110.03189 * 180.02562 * 10 9 7 25 25 H 0.96997 * 119.99887 * 0.02562 * 1 2 3 26 26 H 0.97005 * 120.00169 * 354.60534 * 9 7 2 27 27 H 1.08999 * 109.47407 * 183.89833 * 11 10 9 28 28 H 1.09005 * 109.46500 * 63.90320 * 11 10 9 29 29 H 0.97006 * 120.00134 * 355.12035 * 12 11 10 30 30 H 1.08994 * 117.49736 * 214.98201 * 17 15 13 31 31 H 1.08998 * 117.49538 * 0.02562 * 17 15 13 32 32 H 1.09000 * 117.49806 * 238.38530 * 19 18 15 33 33 H 1.08998 * 117.50100 * 23.39856 * 19 18 15 34 34 H 1.08999 * 117.49671 * 336.59916 * 20 18 15 35 35 H 1.08999 * 117.50053 * 121.59405 * 20 18 15 36 36 H 1.09000 * 110.48889 * 214.37433 * 21 10 9 37 37 H 1.09003 * 110.48535 * 337.01886 * 21 10 9 38 38 H 1.09002 * 110.75213 * 279.62562 * 22 21 10 39 39 H 1.09001 * 110.75895 * 156.25987 * 22 21 10 40 40 H 1.08994 * 110.49164 * 203.38018 * 23 22 21 41 41 H 1.09007 * 110.48262 * 80.73267 * 23 22 21 42 42 H 1.09006 * 110.03597 * 359.95115 * 24 10 9 43 43 H 1.09002 * 110.03274 * 121.38228 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0104 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 2.0534 -3.6540 -0.1183 11 6 2.8624 -3.6732 -1.4167 12 7 1.9683 -3.4362 -2.5527 13 6 2.4757 -3.3116 -3.7951 14 8 3.6726 -3.3952 -3.9725 15 6 1.5559 -3.0685 -4.9638 16 1 0.5801 -3.5502 -4.9023 17 6 1.6268 -1.7007 -5.6460 18 6 2.1928 -2.9366 -6.3486 19 6 3.4749 -3.3617 -7.0671 20 6 2.1135 -3.6154 -7.7174 21 6 2.9917 -3.8409 1.0918 22 6 2.1745 -4.7158 2.0746 23 6 1.4385 -5.6965 1.1283 24 6 1.0660 -4.8339 -0.0940 25 1 -0.4850 0.8400 -0.0004 26 1 0.3588 -2.3899 0.0791 27 1 3.3446 -4.6441 -1.5301 28 1 3.6219 -2.8920 -1.3830 29 1 1.0111 -3.3691 -2.4108 30 1 0.6977 -1.2828 -6.0334 31 1 2.3390 -0.9770 -5.2496 32 1 4.0975 -2.5751 -7.4932 33 1 4.0119 -4.2235 -6.6707 34 1 1.7547 -4.6441 -7.7489 35 1 1.8400 -2.9957 -8.5714 36 1 3.9042 -4.3556 0.7912 37 1 3.2274 -2.8775 1.5442 38 1 1.4614 -4.1079 2.6315 39 1 2.8356 -5.2558 2.7525 40 1 0.5408 -6.0874 1.6072 41 1 2.1002 -6.5110 0.8334 42 1 0.0453 -4.4647 0.0071 43 1 1.1625 -5.4204 -1.0076 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270798624.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:55:45 Heat of formation + Delta-G solvation = 5.838730 kcal Electronic energy + Delta-G solvation = -22323.348199 eV Core-core repulsion = 19176.390227 eV Total energy + Delta-G solvation = -3146.957972 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.06759 -39.82437 -38.28066 -35.53962 -35.07851 -33.56080 -32.37136 -29.60981 -29.48749 -26.59024 -25.27859 -23.98899 -23.27383 -21.81231 -21.09982 -20.38647 -19.77937 -18.92010 -18.08031 -17.30270 -16.65838 -16.28240 -16.00006 -15.87194 -15.81333 -15.42593 -15.18002 -15.06635 -14.27689 -14.06126 -13.53305 -13.45878 -13.21912 -12.93116 -12.63609 -12.47594 -12.38841 -12.34717 -12.17920 -11.88409 -11.73413 -11.58895 -11.39312 -11.32429 -11.17420 -11.08201 -10.96185 -10.89944 -10.64518 -9.90158 -8.94850 -7.91311 -5.16410 1.43061 1.44616 1.49436 1.55863 2.20120 2.55701 2.76309 2.93463 3.35117 3.39766 3.76273 3.81151 3.85511 3.87789 3.97172 4.13807 4.15230 4.43536 4.50695 4.56664 4.63435 4.66188 4.74433 4.75579 4.77284 4.78952 4.86487 4.96796 5.00856 5.02072 5.04797 5.13763 5.18698 5.27010 5.27936 5.39661 5.49048 5.58007 5.61494 5.68441 6.32574 6.69265 7.34334 7.39993 8.13479 8.38331 9.30870 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.012524 B = 0.006288 C = 0.004648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2235.189804 B = 4451.512462 C = 6023.159682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.959 5.959 2 C -0.062 4.062 3 Si 0.948 3.052 4 H -0.292 1.292 5 H -0.294 1.294 6 H -0.283 1.283 7 C -0.215 4.215 8 H 0.059 0.941 9 N -0.712 5.712 10 C 0.184 3.816 11 C 0.128 3.872 12 N -0.693 5.693 13 C 0.529 3.471 14 O -0.589 6.589 15 C -0.145 4.145 16 H 0.146 0.854 17 C -0.100 4.100 18 C -0.221 4.221 19 C -0.131 4.131 20 C -0.097 4.097 21 C -0.133 4.133 22 C -0.113 4.113 23 C -0.112 4.112 24 C -0.119 4.119 25 H 0.248 0.752 26 H 0.376 0.624 27 H 0.064 0.936 28 H 0.028 0.972 29 H 0.407 0.593 30 H 0.130 0.870 31 H 0.076 0.924 32 H 0.099 0.901 33 H 0.084 0.916 34 H 0.110 0.890 35 H 0.120 0.880 36 H 0.068 0.932 37 H 0.046 0.954 38 H 0.049 0.951 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.079 0.921 42 H 0.063 0.937 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.278 -11.916 -8.356 14.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.610 5.610 2 C -0.255 4.255 3 Si 0.779 3.221 4 H -0.219 1.219 5 H -0.220 1.220 6 H -0.210 1.210 7 C -0.347 4.347 8 H 0.077 0.923 9 N -0.353 5.353 10 C 0.094 3.906 11 C 0.002 3.998 12 N -0.342 5.342 13 C 0.317 3.683 14 O -0.471 6.471 15 C -0.166 4.166 16 H 0.163 0.837 17 C -0.137 4.137 18 C -0.221 4.221 19 C -0.168 4.168 20 C -0.134 4.134 21 C -0.173 4.173 22 C -0.150 4.150 23 C -0.149 4.149 24 C -0.157 4.157 25 H 0.057 0.943 26 H 0.210 0.790 27 H 0.082 0.918 28 H 0.047 0.953 29 H 0.242 0.758 30 H 0.148 0.852 31 H 0.094 0.906 32 H 0.117 0.883 33 H 0.103 0.897 34 H 0.128 0.872 35 H 0.138 0.862 36 H 0.086 0.914 37 H 0.065 0.935 38 H 0.068 0.932 39 H 0.096 0.904 40 H 0.094 0.906 41 H 0.098 0.902 42 H 0.082 0.918 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.238 -11.848 -8.454 14.608 hybrid contribution -0.080 1.632 0.507 1.711 sum 1.158 -10.216 -7.948 12.995 Atomic orbital electron populations 1.69739 1.05770 1.25561 1.59909 1.25186 0.96077 0.99718 1.04501 0.85600 0.77518 0.81412 0.77546 1.21924 1.22012 1.20972 1.19156 0.90637 0.85176 1.39730 0.92294 1.42588 1.05580 1.00063 1.87039 1.20719 0.92055 0.86594 0.91266 1.21739 0.92665 0.98735 0.86687 1.45677 1.11506 1.71148 1.05862 1.20215 0.88257 0.75523 0.84328 1.90606 1.17487 1.53078 1.85924 1.21985 1.00412 1.04259 0.89894 0.83662 1.22654 1.02850 0.88794 0.99443 1.21396 1.05834 1.02357 0.92535 1.22619 0.90494 1.02517 1.01149 1.22887 0.97728 1.01371 0.91365 1.22784 0.98237 0.99496 0.96750 1.22355 0.98520 0.96929 0.97213 1.22278 1.00568 0.97277 0.94806 1.22360 0.98446 0.95306 0.99632 0.94253 0.79016 0.91790 0.95349 0.75764 0.85202 0.90593 0.88293 0.89704 0.87182 0.86212 0.91375 0.93532 0.93176 0.90378 0.90602 0.90233 0.91819 0.90586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -55.79 13.07 21.65 0.28 -55.51 16 2 C -0.06 -3.45 5.50 84.86 0.47 -2.98 16 3 Si 0.95 46.55 29.55 68.60 2.03 48.58 16 4 H -0.29 -14.44 7.11 99.48 0.71 -13.73 16 5 H -0.29 -14.45 7.11 99.48 0.71 -13.74 16 6 H -0.28 -13.59 7.11 99.48 0.71 -12.88 16 7 C -0.21 -11.34 8.39 84.03 0.70 -10.63 16 8 H 0.06 3.19 7.23 -2.91 -0.02 3.17 16 9 N -0.71 -32.33 4.76 -300.09 -1.43 -33.76 16 10 C 0.18 6.62 0.68 4.33 0.00 6.62 16 11 C 0.13 4.82 3.99 86.38 0.34 5.16 16 12 N -0.69 -25.07 5.10 -463.08 -2.36 -27.43 16 13 C 0.53 19.79 7.61 87.66 0.67 20.45 16 14 O -0.59 -26.03 16.24 -3.03 -0.05 -26.08 16 15 C -0.14 -4.26 6.19 -11.54 -0.07 -4.33 16 16 H 0.15 3.43 8.14 -2.39 -0.02 3.41 16 17 C -0.10 -2.82 10.24 30.60 0.31 -2.51 16 18 C -0.22 -5.88 5.05 -52.18 -0.26 -6.14 16 19 C -0.13 -3.28 10.16 30.59 0.31 -2.97 16 20 C -0.10 -1.82 10.53 30.59 0.32 -1.50 16 21 C -0.13 -4.51 5.94 31.67 0.19 -4.32 16 22 C -0.11 -3.15 6.91 31.89 0.22 -2.93 16 23 C -0.11 -2.66 6.83 31.64 0.22 -2.44 16 24 C -0.12 -3.40 5.80 31.29 0.18 -3.22 16 25 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 26 H 0.38 18.28 7.28 -92.70 -0.67 17.60 16 27 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 28 H 0.03 1.27 7.49 -2.38 -0.02 1.25 16 29 H 0.41 13.94 8.00 -92.70 -0.74 13.19 16 30 H 0.13 2.92 8.14 -2.39 -0.02 2.90 16 31 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 32 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 33 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 34 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.12 1.72 8.14 -2.39 -0.02 1.71 16 36 H 0.07 2.08 7.85 -2.39 -0.02 2.06 16 37 H 0.05 1.87 7.12 -2.39 -0.02 1.85 16 38 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 40 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 42 H 0.06 1.91 7.44 -2.38 -0.02 1.89 16 43 H 0.08 1.95 7.55 -2.39 -0.02 1.93 16 Total: -1.00 -65.90 349.83 1.67 -64.23 By element: Atomic # 1 Polarization: 42.11 SS G_CDS: -0.41 Total: 41.70 kcal Atomic # 6 Polarization: -15.34 SS G_CDS: 3.60 Total: -11.74 kcal Atomic # 7 Polarization: -113.19 SS G_CDS: -3.51 Total: -116.70 kcal Atomic # 8 Polarization: -26.03 SS G_CDS: -0.05 Total: -26.08 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 2.03 Total: 48.58 kcal Total: -65.90 1.67 -64.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270798624.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.074 kcal (2) G-P(sol) polarization free energy of solvation -65.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.235 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds