Wall clock time and date at job start Mon Mar 30 2020 23:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86806 * 119.99863 * 2 1 4 4 H 1.48503 * 109.47097 * 240.00182 * 3 2 1 5 5 H 1.48498 * 109.47056 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47094 * 120.00073 * 3 2 1 7 7 C 1.38816 * 120.00399 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00048 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99689 * 359.97438 * 7 2 1 10 10 C 1.46507 * 119.99881 * 186.23550 * 9 7 2 11 11 C 1.53003 * 110.05470 * 57.74193 * 10 9 7 12 12 N 1.46505 * 109.47060 * 56.33547 * 11 10 9 13 13 C 1.34772 * 119.99976 * 175.58941 * 12 11 10 14 14 O 1.21283 * 119.99597 * 359.97438 * 13 12 11 15 15 C 1.50695 * 120.00091 * 180.02562 * 13 12 11 16 16 H 1.08998 * 115.55162 * 34.26965 * 15 13 12 17 17 C 1.53004 * 117.49731 * 248.60372 * 15 13 12 18 18 C 1.52997 * 59.99943 * 252.50925 * 17 15 13 19 19 C 1.52987 * 138.58780 * 130.89296 * 18 17 15 20 20 C 1.52991 * 138.58694 * 229.10908 * 18 17 15 21 21 C 1.53870 * 110.03282 * 179.16094 * 10 9 7 22 22 C 1.54259 * 106.60007 * 119.27907 * 21 10 9 23 23 C 1.54891 * 104.19753 * 336.39505 * 22 21 10 24 24 C 1.54262 * 110.02683 * 296.32802 * 10 9 7 25 25 H 0.97000 * 120.00021 * 0.02562 * 1 2 3 26 26 H 0.97000 * 120.00073 * 6.22933 * 9 7 2 27 27 H 1.09003 * 109.46653 * 176.32788 * 11 10 9 28 28 H 1.08994 * 109.47409 * 296.33281 * 11 10 9 29 29 H 0.96994 * 119.99617 * 355.57976 * 12 11 10 30 30 H 1.09006 * 117.49910 * 359.97438 * 17 15 13 31 31 H 1.09001 * 117.49935 * 144.99457 * 17 15 13 32 32 H 1.09003 * 117.49808 * 238.38376 * 19 18 17 33 33 H 1.08992 * 117.50243 * 23.40058 * 19 18 17 34 34 H 1.08995 * 117.50023 * 336.59197 * 20 18 17 35 35 H 1.08998 * 117.49777 * 121.59455 * 20 18 17 36 36 H 1.09000 * 110.03547 * 238.57353 * 21 10 9 37 37 H 1.09008 * 110.02937 * 359.97438 * 21 10 9 38 38 H 1.09008 * 110.48451 * 95.07166 * 22 21 10 39 39 H 1.09005 * 110.49288 * 217.70919 * 22 21 10 40 40 H 1.08998 * 110.75246 * 279.62405 * 23 22 21 41 41 H 1.09000 * 110.91821 * 156.33008 * 23 22 21 42 42 H 1.08992 * 110.49346 * 23.00417 * 24 10 9 43 43 H 1.08999 * 110.48163 * 145.51884 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 2.0518 -3.6531 0.1367 11 6 2.8603 -3.6557 1.4356 12 7 1.9652 -3.4075 2.5686 13 6 2.4433 -3.4535 3.8278 14 8 3.6145 -3.7007 4.0230 15 6 1.5225 -3.1988 4.9932 16 1 0.4978 -3.5485 4.8678 17 6 1.7372 -1.9138 5.7955 18 6 2.1254 -3.2656 6.3977 19 6 3.3223 -3.9061 7.1033 20 6 1.9197 -4.0436 7.6989 21 6 1.0630 -4.8320 0.1290 22 6 1.4350 -5.7113 -1.0826 23 6 2.1726 -4.7442 -2.0417 24 6 2.9903 -3.8571 -1.0704 25 1 -0.4850 0.8400 -0.0004 26 1 0.3599 -2.3905 -0.0913 27 1 3.3442 -4.6244 1.5604 28 1 3.6183 -2.8736 1.3934 29 1 1.0285 -3.2101 2.4123 30 1 2.5448 -1.2528 5.4806 31 1 0.8537 -1.4182 6.1980 32 1 3.7630 -4.7909 6.6439 33 1 4.0218 -3.2420 7.6109 34 1 1.6964 -3.4699 8.5984 35 1 1.4373 -5.0187 7.6313 36 1 1.1590 -5.4060 1.0506 37 1 0.0427 -4.4628 0.0235 38 1 2.0957 -6.5226 -0.7766 39 1 0.5370 -6.1076 -1.5566 40 1 1.4604 -4.1431 -2.6070 41 1 2.8331 -5.2916 -2.7141 42 1 3.2274 -2.9003 -1.5355 43 1 3.9031 -4.3669 -0.7620 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270798625.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:55:48 Heat of formation + Delta-G solvation = 23.217116 kcal Electronic energy + Delta-G solvation = -22289.672725 eV Core-core repulsion = 19143.468337 eV Total energy + Delta-G solvation = -3146.204388 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.67005 -38.45544 -37.05753 -34.00636 -33.26188 -32.47536 -30.60345 -28.26333 -27.89382 -25.05344 -23.53957 -22.62156 -22.35649 -20.49257 -19.82907 -19.08589 -18.36575 -17.00518 -16.66531 -15.82037 -15.28004 -14.97426 -14.81338 -14.56635 -14.16002 -14.14222 -13.63614 -13.32042 -12.86712 -12.65441 -12.17921 -11.90017 -11.54358 -11.45850 -11.41486 -11.12181 -10.77652 -10.72429 -10.63653 -10.53480 -10.25941 -10.13434 -10.10903 -9.99720 -9.90417 -9.88096 -9.65596 -9.28427 -8.89524 -8.34849 -7.01997 -5.81631 -3.10730 2.94185 3.41757 3.46496 3.46668 3.48690 3.86201 4.06728 4.42008 4.56113 4.90565 4.95806 5.11598 5.13395 5.23913 5.36813 5.54500 5.56534 5.61061 5.68708 5.69252 5.71749 5.78557 5.83556 5.94856 5.95626 5.96079 6.09649 6.11968 6.19306 6.19966 6.27246 6.32565 6.45550 6.57433 6.62736 6.77550 6.82633 7.01913 7.15641 7.69729 8.17140 8.37270 8.80363 9.48909 10.02790 10.38472 11.40320 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.012626 B = 0.006149 C = 0.004573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2217.156172 B = 4552.647596 C = 6121.930201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.007 4.007 3 Si 0.901 3.099 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.287 1.287 7 C -0.233 4.233 8 H 0.068 0.932 9 N -0.711 5.711 10 C 0.189 3.811 11 C 0.122 3.878 12 N -0.696 5.696 13 C 0.536 3.464 14 O -0.554 6.554 15 C -0.135 4.135 16 H 0.120 0.880 17 C -0.098 4.098 18 C -0.202 4.202 19 C -0.114 4.114 20 C -0.133 4.133 21 C -0.125 4.125 22 C -0.121 4.121 23 C -0.117 4.117 24 C -0.132 4.132 25 H 0.255 0.745 26 H 0.384 0.616 27 H 0.052 0.948 28 H 0.062 0.938 29 H 0.405 0.595 30 H 0.101 0.899 31 H 0.104 0.896 32 H 0.098 0.902 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.060 0.940 37 H 0.068 0.932 38 H 0.058 0.942 39 H 0.057 0.943 40 H 0.067 0.933 41 H 0.054 0.946 42 H 0.078 0.922 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.857 -9.985 7.507 12.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.204 4.204 3 Si 0.732 3.268 4 H -0.213 1.213 5 H -0.218 1.218 6 H -0.213 1.213 7 C -0.364 4.364 8 H 0.086 0.914 9 N -0.352 5.352 10 C 0.097 3.903 11 C -0.004 4.004 12 N -0.345 5.345 13 C 0.321 3.679 14 O -0.433 6.433 15 C -0.156 4.156 16 H 0.138 0.862 17 C -0.136 4.136 18 C -0.203 4.203 19 C -0.150 4.150 20 C -0.170 4.170 21 C -0.163 4.163 22 C -0.158 4.158 23 C -0.154 4.154 24 C -0.172 4.172 25 H 0.065 0.935 26 H 0.219 0.781 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.240 0.760 30 H 0.119 0.881 31 H 0.123 0.877 32 H 0.116 0.884 33 H 0.112 0.888 34 H 0.114 0.886 35 H 0.112 0.888 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.086 0.914 41 H 0.073 0.927 42 H 0.097 0.903 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.779 -9.998 7.628 12.701 hybrid contribution -0.356 1.205 -0.239 1.279 sum 1.424 -8.793 7.389 11.573 Atomic orbital electron populations 1.69635 1.04996 1.25733 1.57588 1.24677 0.95395 0.97458 1.02823 0.86367 0.78642 0.83890 0.77901 1.21322 1.21774 1.21331 1.19039 0.90963 0.83847 1.42585 0.91365 1.42553 1.06170 0.99530 1.86996 1.20462 0.91327 0.87193 0.91348 1.21840 0.93023 0.99466 0.86107 1.45709 1.14097 1.69900 1.04840 1.19555 0.87799 0.77017 0.83526 1.90634 1.17380 1.49745 1.85536 1.21959 0.99654 1.04337 0.89691 0.86179 1.22638 1.02878 0.88864 0.99179 1.21148 1.05746 1.00857 0.92542 1.22538 0.90201 1.01891 1.00416 1.22726 1.00019 1.00287 0.93929 1.22416 0.99788 0.96277 0.97795 1.22302 0.99563 0.97622 0.96349 1.22379 0.98741 0.97103 0.97217 1.22827 0.97327 1.00176 0.96891 0.93524 0.78126 0.92931 0.91949 0.76003 0.88051 0.87747 0.88364 0.88797 0.88604 0.88774 0.92093 0.91329 0.92319 0.92379 0.91431 0.92744 0.90346 0.92950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.49 13.07 55.49 0.73 -25.76 16 2 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 3 Si 0.90 22.00 29.55 -169.99 -5.02 16.98 16 4 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 7 C -0.23 -5.98 8.39 -15.06 -0.13 -6.11 16 8 H 0.07 1.77 7.23 -52.48 -0.38 1.39 16 9 N -0.71 -15.87 4.64 -46.19 -0.21 -16.09 16 10 C 0.19 3.44 0.68 -130.70 -0.09 3.35 16 11 C 0.12 2.29 3.98 -4.04 -0.02 2.28 16 12 N -0.70 -12.66 5.09 -60.29 -0.31 -12.96 16 13 C 0.54 9.86 7.61 -10.99 -0.08 9.78 16 14 O -0.55 -11.79 16.24 5.55 0.09 -11.70 16 15 C -0.14 -2.04 6.19 -91.77 -0.57 -2.61 16 16 H 0.12 1.56 8.14 -51.93 -0.42 1.13 16 17 C -0.10 -1.38 10.23 -26.73 -0.27 -1.66 16 18 C -0.20 -2.80 5.05 -154.52 -0.78 -3.58 16 19 C -0.11 -1.46 10.16 -26.74 -0.27 -1.73 16 20 C -0.13 -1.44 10.53 -26.73 -0.28 -1.72 16 21 C -0.12 -1.93 5.92 -25.62 -0.15 -2.08 16 22 C -0.12 -1.65 6.83 -25.08 -0.17 -1.83 16 23 C -0.12 -1.76 6.91 -24.74 -0.17 -1.93 16 24 C -0.13 -2.28 5.95 -25.07 -0.15 -2.43 16 25 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 26 H 0.38 9.19 7.28 -40.82 -0.30 8.89 16 27 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.06 1.34 7.46 -51.93 -0.39 0.96 16 29 H 0.40 7.21 8.00 -40.82 -0.33 6.89 16 30 H 0.10 1.56 8.14 -51.93 -0.42 1.14 16 31 H 0.10 1.24 8.14 -51.93 -0.42 0.81 16 32 H 0.10 1.34 8.14 -51.93 -0.42 0.91 16 33 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 36 H 0.06 0.89 7.54 -51.93 -0.39 0.50 16 37 H 0.07 1.10 7.44 -51.92 -0.39 0.71 16 38 H 0.06 0.74 8.14 -51.92 -0.42 0.32 16 39 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.08 1.55 7.16 -51.93 -0.37 1.17 16 43 H 0.05 0.83 7.85 -51.93 -0.41 0.42 16 LS Contribution 349.84 15.07 5.27 5.27 Total: -1.00 -29.47 349.84 -9.84 -39.31 By element: Atomic # 1 Polarization: 22.68 SS G_CDS: -7.16 Total: 15.52 kcal Atomic # 6 Polarization: -7.34 SS G_CDS: -3.23 Total: -10.57 kcal Atomic # 7 Polarization: -55.02 SS G_CDS: 0.20 Total: -54.81 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: 0.09 Total: -11.70 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -29.47 -9.84 -39.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270798625.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.528 kcal (2) G-P(sol) polarization free energy of solvation -29.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.311 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds