Wall clock time and date at job start Tue Mar 31 2020 00:32:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86799 * 120.00143 * 2 1 4 4 H 1.48504 * 109.46504 * 269.99434 * 3 2 1 5 5 H 1.48495 * 109.46942 * 29.99521 * 3 2 1 6 6 H 1.48499 * 109.46986 * 149.99732 * 3 2 1 7 7 C 1.38816 * 119.99759 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00058 * 0.02562 * 7 2 1 9 9 N 1.36939 * 119.99827 * 180.02562 * 7 2 1 10 10 C 1.46502 * 119.99635 * 174.34609 * 9 7 2 11 11 C 1.52995 * 112.84934 * 65.60483 * 10 9 7 12 12 N 1.46506 * 109.47394 * 46.42736 * 11 10 9 13 13 C 1.34770 * 120.00206 * 185.30422 * 12 11 10 14 14 O 1.21284 * 119.99838 * 359.97438 * 13 12 11 15 15 C 1.50697 * 120.00047 * 179.97438 * 13 12 11 16 16 H 1.08998 * 115.52623 * 325.49675 * 15 13 12 17 17 C 1.53000 * 117.46098 * 110.95521 * 15 13 12 18 18 H 1.09002 * 119.30019 * 356.29697 * 17 15 13 19 19 C 1.54268 * 118.20087 * 201.21386 * 17 15 13 20 20 C 1.54887 * 104.19587 * 272.21390 * 19 17 15 21 21 C 1.54887 * 102.75079 * 37.93869 * 20 19 17 22 22 C 1.53007 * 117.46117 * 179.97438 * 15 13 12 23 23 H 1.08994 * 119.29394 * 4.64817 * 22 15 13 24 24 C 1.53782 * 113.69035 * 196.87036 * 10 9 7 25 25 C 1.53784 * 87.08196 * 89.12698 * 24 10 9 26 26 C 1.53779 * 113.61775 * 294.40367 * 10 9 7 27 27 H 0.97001 * 119.99564 * 0.02562 * 1 2 3 28 28 H 0.96992 * 120.00271 * 354.35086 * 9 7 2 29 29 H 1.09000 * 109.47379 * 166.42542 * 11 10 9 30 30 H 1.08998 * 109.47275 * 286.42664 * 11 10 9 31 31 H 0.97000 * 119.99495 * 5.29836 * 12 11 10 32 32 H 1.09001 * 110.48179 * 153.53381 * 19 17 15 33 33 H 1.08998 * 110.59558 * 30.94653 * 19 17 15 34 34 H 1.09000 * 110.75749 * 279.62437 * 20 19 17 35 35 H 1.09002 * 110.91416 * 156.32922 * 20 19 17 36 36 H 1.08997 * 110.49198 * 203.37737 * 21 20 19 37 37 H 1.09005 * 110.59664 * 80.79139 * 21 20 19 38 38 H 1.08990 * 113.61743 * 203.67779 * 24 10 9 39 39 H 1.09005 * 113.61261 * 334.58626 * 24 10 9 40 40 H 1.08999 * 113.61698 * 270.88439 * 25 24 10 41 41 H 1.08995 * 113.68783 * 139.99303 * 25 24 10 42 42 H 1.09005 * 113.60880 * 25.35429 * 26 10 9 43 43 H 1.08994 * 113.61723 * 156.24935 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0462 -1.4002 5 1 1.4477 2.6526 0.6999 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1376 0.0005 9 7 3.3796 -1.2022 0.0011 10 6 4.1120 -2.4648 0.1266 11 6 3.9051 -3.3933 -1.0716 12 7 4.0579 -2.6302 -2.3129 13 6 3.8131 -3.2189 -3.5003 14 8 3.4668 -4.3805 -3.5413 15 6 3.9697 -2.4337 -4.7770 16 1 3.7037 -1.3785 -4.7151 17 6 5.1257 -2.8163 -5.7033 18 1 5.8267 -3.5900 -5.3900 19 6 5.6196 -1.7697 -6.7234 20 6 4.7206 -1.9951 -7.9643 21 6 3.3408 -2.3090 -7.3345 22 6 3.6774 -3.1594 -6.0920 23 1 3.2968 -4.1804 -6.0645 24 6 5.5879 -2.2866 0.5202 25 6 5.1233 -2.3490 1.9849 26 6 3.9153 -3.1587 1.4848 27 1 -0.4849 0.8401 -0.0004 28 1 3.8647 -0.3664 -0.0816 29 1 4.6451 -4.1932 -1.0436 30 1 2.9042 -3.8228 -1.0300 31 1 4.3351 -1.7013 -2.2801 32 1 6.6660 -1.9450 -6.9734 33 1 5.4853 -0.7609 -6.3332 34 1 5.0782 -2.8405 -8.5521 35 1 4.6698 -1.0948 -8.5767 36 1 2.7242 -2.8777 -8.0304 37 1 2.8347 -1.3891 -7.0417 38 1 6.2220 -3.1232 0.2272 39 1 6.0022 -1.3196 0.2345 40 1 4.8560 -1.3773 2.4000 41 1 5.7915 -2.9166 2.6324 42 1 2.9793 -2.8960 1.9778 43 1 4.0921 -4.2338 1.4556 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273061593.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:32:21 Heat of formation + Delta-G solvation = 15.730612 kcal Electronic energy + Delta-G solvation = -22129.728299 eV Core-core repulsion = 18983.199272 eV Total energy + Delta-G solvation = -3146.529028 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.21214 -39.11795 -37.82207 -33.91458 -33.24152 -31.79778 -30.57463 -28.33184 -27.69810 -25.33154 -24.22664 -23.24881 -21.54835 -20.66512 -19.81870 -19.65108 -18.31362 -17.69528 -17.23691 -15.78321 -15.35342 -15.14692 -14.61746 -14.47111 -14.28024 -14.12366 -13.37322 -13.24484 -13.06964 -12.77912 -12.65447 -12.34371 -11.83586 -11.54626 -11.47115 -11.35359 -11.27121 -11.22848 -10.96849 -10.92043 -10.46368 -10.26584 -10.19606 -10.06302 -9.83578 -9.68246 -9.56191 -9.35875 -8.93261 -8.45435 -7.38267 -5.82521 -3.20881 2.81351 3.29458 3.31802 3.39203 3.55308 3.80619 4.51324 4.53933 4.67118 4.70157 4.97991 5.06631 5.10147 5.14972 5.16949 5.27427 5.34593 5.38727 5.39343 5.42735 5.54471 5.63558 5.64738 5.71683 5.88565 5.94744 5.97963 6.03024 6.08902 6.11104 6.19828 6.21490 6.24410 6.34581 6.47166 6.66322 6.79222 6.88990 7.05400 7.94518 8.05417 8.36044 8.70930 9.12469 9.83824 10.01918 11.35347 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.015078 B = 0.005310 C = 0.004512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.604777 B = 5271.919946 C = 6204.402518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.009 3.991 3 Si 0.879 3.121 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.276 1.276 7 C -0.239 4.239 8 H 0.091 0.909 9 N -0.724 5.724 10 C 0.177 3.823 11 C 0.124 3.876 12 N -0.696 5.696 13 C 0.541 3.459 14 O -0.555 6.555 15 C -0.158 4.158 16 H 0.119 0.881 17 C -0.141 4.141 18 H 0.112 0.888 19 C -0.096 4.096 20 C -0.122 4.122 21 C -0.099 4.099 22 C -0.131 4.131 23 H 0.121 0.879 24 C -0.145 4.145 25 C -0.131 4.131 26 C -0.148 4.148 27 H 0.260 0.740 28 H 0.363 0.637 29 H 0.055 0.945 30 H 0.068 0.932 31 H 0.401 0.599 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.081 0.919 39 H 0.062 0.938 40 H 0.079 0.921 41 H 0.056 0.944 42 H 0.079 0.921 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.551 -3.141 -9.631 16.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.187 4.187 3 Si 0.709 3.291 4 H -0.212 1.212 5 H -0.218 1.218 6 H -0.202 1.202 7 C -0.368 4.368 8 H 0.109 0.891 9 N -0.366 5.366 10 C 0.085 3.915 11 C -0.002 4.002 12 N -0.345 5.345 13 C 0.326 3.674 14 O -0.434 6.434 15 C -0.179 4.179 16 H 0.137 0.863 17 C -0.160 4.160 18 H 0.130 0.870 19 C -0.133 4.133 20 C -0.160 4.160 21 C -0.136 4.136 22 C -0.149 4.149 23 H 0.139 0.861 24 C -0.183 4.183 25 C -0.168 4.168 26 C -0.188 4.188 27 H 0.070 0.930 28 H 0.196 0.804 29 H 0.073 0.927 30 H 0.086 0.914 31 H 0.236 0.764 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.099 0.901 39 H 0.081 0.919 40 H 0.097 0.903 41 H 0.075 0.925 42 H 0.098 0.902 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 13.037 -4.004 -9.615 16.687 hybrid contribution 0.482 1.770 0.192 1.844 sum 13.519 -2.234 -9.423 16.630 Atomic orbital electron populations 1.69698 1.05105 1.25797 1.57027 1.24666 0.95141 0.97000 1.01889 0.86643 0.79366 0.85362 0.77709 1.21158 1.21777 1.20219 1.18929 0.80075 0.94669 1.43156 0.89118 1.42404 1.03978 1.01570 1.88695 1.20776 0.90925 0.88038 0.91763 1.21753 1.01342 0.93683 0.83455 1.45603 1.67894 1.15757 1.05210 1.19454 0.76912 0.86734 0.84255 1.90646 1.47895 1.17406 1.87502 1.22389 1.04670 1.00693 0.90184 0.86265 1.23200 0.91420 1.01590 0.99768 0.87010 1.21987 0.99293 0.98119 0.93920 1.22681 0.94761 1.01343 0.97205 1.22018 0.97115 0.99441 0.95041 1.23195 0.98600 1.00765 0.92355 0.86126 1.23239 0.96317 1.01486 0.97283 1.22654 0.97845 1.00820 0.95527 1.23272 0.99320 0.97983 0.98195 0.93014 0.80363 0.92669 0.91386 0.76428 0.91096 0.91115 0.91302 0.91311 0.90979 0.91099 0.90074 0.91934 0.90267 0.92484 0.90183 0.91041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.45 13.97 55.49 0.78 -27.68 16 2 C 0.01 0.26 5.50 -17.43 -0.10 0.16 16 3 Si 0.88 20.97 27.68 -169.99 -4.71 16.26 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.28 -6.16 6.60 56.52 0.37 -5.78 16 7 C -0.24 -6.30 9.75 -15.06 -0.15 -6.44 16 8 H 0.09 2.67 8.06 -52.48 -0.42 2.24 16 9 N -0.72 -15.46 4.28 -46.48 -0.20 -15.66 16 10 C 0.18 3.14 0.94 -131.01 -0.12 3.02 16 11 C 0.12 2.24 5.05 -4.04 -0.02 2.22 16 12 N -0.70 -12.16 5.37 -60.30 -0.32 -12.48 16 13 C 0.54 9.74 7.61 -10.99 -0.08 9.66 16 14 O -0.56 -11.78 16.32 5.55 0.09 -11.68 16 15 C -0.16 -2.29 5.74 -91.77 -0.53 -2.82 16 16 H 0.12 1.65 8.14 -51.93 -0.42 1.23 16 17 C -0.14 -1.69 6.64 -89.52 -0.59 -2.28 16 18 H 0.11 1.35 8.14 -51.93 -0.42 0.93 16 19 C -0.10 -0.90 6.62 -25.07 -0.17 -1.07 16 20 C -0.12 -1.07 6.91 -24.74 -0.17 -1.25 16 21 C -0.10 -1.04 6.63 -25.07 -0.17 -1.20 16 22 C -0.13 -1.72 6.39 -89.51 -0.57 -2.29 16 23 H 0.12 1.75 7.78 -51.93 -0.40 1.35 16 24 C -0.15 -2.10 7.37 -25.92 -0.19 -2.29 16 25 C -0.13 -1.95 7.99 -25.92 -0.21 -2.16 16 26 C -0.15 -2.49 7.28 -25.92 -0.19 -2.68 16 27 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 28 H 0.36 7.60 5.80 -40.82 -0.24 7.36 16 29 H 0.06 0.92 7.89 -51.93 -0.41 0.51 16 30 H 0.07 1.44 8.13 -51.93 -0.42 1.01 16 31 H 0.40 6.59 8.05 -40.82 -0.33 6.27 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.08 1.03 7.93 -51.93 -0.41 0.62 16 39 H 0.06 0.88 8.10 -51.93 -0.42 0.46 16 40 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 41 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.08 1.56 7.85 -51.93 -0.41 1.16 16 43 H 0.07 1.06 8.10 -51.93 -0.42 0.64 16 LS Contribution 346.26 15.07 5.22 5.22 Total: -1.00 -31.22 346.26 -9.67 -40.90 By element: Atomic # 1 Polarization: 21.83 SS G_CDS: -7.28 Total: 14.56 kcal Atomic # 6 Polarization: -6.17 SS G_CDS: -3.25 Total: -9.42 kcal Atomic # 7 Polarization: -56.08 SS G_CDS: 0.25 Total: -55.82 kcal Atomic # 8 Polarization: -11.78 SS G_CDS: 0.09 Total: -11.68 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -4.71 Total: 16.26 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.22 -9.67 -40.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273061593.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.626 kcal (2) G-P(sol) polarization free energy of solvation -31.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds