Wall clock time and date at job start Tue Mar 31 2020 00:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86799 * 120.00143 * 2 1 4 4 H 1.48504 * 109.46504 * 269.99434 * 3 2 1 5 5 H 1.48495 * 109.46942 * 29.99521 * 3 2 1 6 6 H 1.48499 * 109.46986 * 149.99732 * 3 2 1 7 7 C 1.38816 * 119.99759 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00058 * 0.02562 * 7 2 1 9 9 N 1.36939 * 119.99827 * 180.02562 * 7 2 1 10 10 C 1.46502 * 119.99635 * 174.34609 * 9 7 2 11 11 C 1.52995 * 112.84934 * 65.60483 * 10 9 7 12 12 N 1.46506 * 109.47394 * 46.42736 * 11 10 9 13 13 C 1.34770 * 120.00206 * 185.30422 * 12 11 10 14 14 O 1.21284 * 119.99838 * 359.97438 * 13 12 11 15 15 C 1.50697 * 120.00047 * 179.97438 * 13 12 11 16 16 H 1.08998 * 115.52623 * 325.49675 * 15 13 12 17 17 C 1.53000 * 117.46098 * 110.95521 * 15 13 12 18 18 H 1.09002 * 119.30019 * 356.29697 * 17 15 13 19 19 C 1.54268 * 118.20087 * 201.21386 * 17 15 13 20 20 C 1.54887 * 104.19587 * 272.21390 * 19 17 15 21 21 C 1.54887 * 102.75079 * 37.93869 * 20 19 17 22 22 C 1.53007 * 117.46117 * 179.97438 * 15 13 12 23 23 H 1.08994 * 119.29394 * 4.64817 * 22 15 13 24 24 C 1.53782 * 113.69035 * 196.87036 * 10 9 7 25 25 C 1.53784 * 87.08196 * 89.12698 * 24 10 9 26 26 C 1.53779 * 113.61775 * 294.40367 * 10 9 7 27 27 H 0.97001 * 119.99564 * 0.02562 * 1 2 3 28 28 H 0.96992 * 120.00271 * 354.35086 * 9 7 2 29 29 H 1.09000 * 109.47379 * 166.42542 * 11 10 9 30 30 H 1.08998 * 109.47275 * 286.42664 * 11 10 9 31 31 H 0.97000 * 119.99495 * 5.29836 * 12 11 10 32 32 H 1.09001 * 110.48179 * 153.53381 * 19 17 15 33 33 H 1.08998 * 110.59558 * 30.94653 * 19 17 15 34 34 H 1.09000 * 110.75749 * 279.62437 * 20 19 17 35 35 H 1.09002 * 110.91416 * 156.32922 * 20 19 17 36 36 H 1.08997 * 110.49198 * 203.37737 * 21 20 19 37 37 H 1.09005 * 110.59664 * 80.79139 * 21 20 19 38 38 H 1.08990 * 113.61743 * 203.67779 * 24 10 9 39 39 H 1.09005 * 113.61261 * 334.58626 * 24 10 9 40 40 H 1.08999 * 113.61698 * 270.88439 * 25 24 10 41 41 H 1.08995 * 113.68783 * 139.99303 * 25 24 10 42 42 H 1.09005 * 113.60880 * 25.35429 * 26 10 9 43 43 H 1.08994 * 113.61723 * 156.24935 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0462 -1.4002 5 1 1.4477 2.6526 0.6999 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1376 0.0005 9 7 3.3796 -1.2022 0.0011 10 6 4.1120 -2.4648 0.1266 11 6 3.9051 -3.3933 -1.0716 12 7 4.0579 -2.6302 -2.3129 13 6 3.8131 -3.2189 -3.5003 14 8 3.4668 -4.3805 -3.5413 15 6 3.9697 -2.4337 -4.7770 16 1 3.7037 -1.3785 -4.7151 17 6 5.1257 -2.8163 -5.7033 18 1 5.8267 -3.5900 -5.3900 19 6 5.6196 -1.7697 -6.7234 20 6 4.7206 -1.9951 -7.9643 21 6 3.3408 -2.3090 -7.3345 22 6 3.6774 -3.1594 -6.0920 23 1 3.2968 -4.1804 -6.0645 24 6 5.5879 -2.2866 0.5202 25 6 5.1233 -2.3490 1.9849 26 6 3.9153 -3.1587 1.4848 27 1 -0.4849 0.8401 -0.0004 28 1 3.8647 -0.3664 -0.0816 29 1 4.6451 -4.1932 -1.0436 30 1 2.9042 -3.8228 -1.0300 31 1 4.3351 -1.7013 -2.2801 32 1 6.6660 -1.9450 -6.9734 33 1 5.4853 -0.7609 -6.3332 34 1 5.0782 -2.8405 -8.5521 35 1 4.6698 -1.0948 -8.5767 36 1 2.7242 -2.8777 -8.0304 37 1 2.8347 -1.3891 -7.0417 38 1 6.2220 -3.1232 0.2272 39 1 6.0022 -1.3196 0.2345 40 1 4.8560 -1.3773 2.4000 41 1 5.7915 -2.9166 2.6324 42 1 2.9793 -2.8960 1.9778 43 1 4.0921 -4.2338 1.4556 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273061593.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:32:20 Heat of formation + Delta-G solvation = -4.233200 kcal Electronic energy + Delta-G solvation = -22130.593995 eV Core-core repulsion = 18983.199272 eV Total energy + Delta-G solvation = -3147.394723 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.43734 -40.44041 -39.11362 -35.44787 -35.14715 -32.76318 -32.51187 -29.20433 -29.10165 -26.68821 -25.79265 -24.77325 -22.84726 -21.62209 -21.08312 -20.65634 -19.93394 -19.56654 -18.53478 -17.20400 -16.66995 -16.36354 -16.20606 -15.88563 -15.61825 -15.44780 -14.80078 -14.67035 -14.38881 -14.13089 -13.95831 -13.70692 -13.23878 -13.13165 -12.98335 -12.60698 -12.43819 -12.27314 -12.12422 -11.98628 -11.81757 -11.70062 -11.68090 -11.54560 -11.13875 -11.04182 -10.95948 -10.84957 -10.58269 -9.96419 -9.32504 -7.99649 -5.35489 1.37993 1.42236 1.47061 1.49845 2.23583 2.49535 2.70408 3.28534 3.42772 3.55144 3.71192 3.72250 3.77692 3.92707 4.00234 4.12154 4.17855 4.20971 4.25211 4.47451 4.51752 4.61072 4.68878 4.72022 4.81512 4.84074 4.90102 4.95779 4.98415 5.11858 5.16578 5.20633 5.21753 5.28480 5.30373 5.36407 5.49178 5.51938 5.65387 5.84497 6.23675 6.63205 7.09504 7.28126 7.82318 8.02976 9.22236 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.015078 B = 0.005310 C = 0.004512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.604777 B = 5271.919946 C = 6204.402518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.987 5.987 2 C -0.064 4.064 3 Si 0.954 3.046 4 H -0.275 1.275 5 H -0.305 1.305 6 H -0.245 1.245 7 C -0.211 4.211 8 H 0.044 0.956 9 N -0.721 5.721 10 C 0.160 3.840 11 C 0.130 3.870 12 N -0.693 5.693 13 C 0.533 3.467 14 O -0.596 6.596 15 C -0.175 4.175 16 H 0.127 0.873 17 C -0.119 4.119 18 H 0.110 0.890 19 C -0.092 4.092 20 C -0.116 4.116 21 C -0.097 4.097 22 C -0.143 4.143 23 H 0.098 0.902 24 C -0.123 4.123 25 C -0.121 4.121 26 C -0.153 4.153 27 H 0.255 0.745 28 H 0.370 0.630 29 H 0.076 0.924 30 H 0.023 0.977 31 H 0.408 0.592 32 H 0.091 0.909 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.087 0.913 36 H 0.079 0.921 37 H 0.068 0.932 38 H 0.109 0.891 39 H 0.076 0.924 40 H 0.065 0.935 41 H 0.088 0.912 42 H 0.041 0.959 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.493 -1.900 -10.643 20.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.638 5.638 2 C -0.255 4.255 3 Si 0.781 3.219 4 H -0.201 1.201 5 H -0.232 1.232 6 H -0.169 1.169 7 C -0.342 4.342 8 H 0.062 0.938 9 N -0.364 5.364 10 C 0.069 3.931 11 C 0.004 3.996 12 N -0.341 5.341 13 C 0.321 3.679 14 O -0.478 6.478 15 C -0.196 4.196 16 H 0.144 0.856 17 C -0.137 4.137 18 H 0.128 0.872 19 C -0.129 4.129 20 C -0.153 4.153 21 C -0.135 4.135 22 C -0.162 4.162 23 H 0.116 0.884 24 C -0.161 4.161 25 C -0.159 4.159 26 C -0.193 4.193 27 H 0.064 0.936 28 H 0.205 0.795 29 H 0.094 0.906 30 H 0.042 0.958 31 H 0.244 0.756 32 H 0.109 0.891 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.106 0.894 36 H 0.098 0.902 37 H 0.086 0.914 38 H 0.127 0.873 39 H 0.094 0.906 40 H 0.084 0.916 41 H 0.106 0.894 42 H 0.060 0.940 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 17.054 -2.776 -10.623 20.282 hybrid contribution -0.802 1.195 0.525 1.532 sum 16.252 -1.580 -10.098 19.198 Atomic orbital electron populations 1.69914 1.07472 1.26489 1.59925 1.25501 0.95946 1.01250 1.02793 0.85430 0.78801 0.79446 0.78200 1.20084 1.23237 1.16914 1.18695 0.82310 0.92685 1.40534 0.93788 1.42246 1.02089 1.03426 1.88611 1.21117 0.93737 0.86569 0.91718 1.21658 0.99445 0.94411 0.84122 1.45616 1.67521 1.15992 1.05002 1.20125 0.75833 0.86534 0.85425 1.90617 1.49698 1.19331 1.88153 1.22348 1.07821 1.00441 0.88994 0.85563 1.23342 0.90467 1.01778 0.98149 0.87162 1.22059 1.00486 0.97327 0.93056 1.22680 0.92976 1.02582 0.97040 1.22066 0.98674 0.98813 0.93924 1.23289 1.00168 1.00066 0.92646 0.88358 1.23185 0.93427 1.03406 0.96057 1.22597 0.96801 0.99962 0.96502 1.23322 0.98874 0.99689 0.97385 0.93592 0.79534 0.90582 0.95828 0.75616 0.89060 0.90578 0.90429 0.89437 0.90245 0.91361 0.87286 0.90562 0.91643 0.89377 0.94012 0.88964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -63.19 13.97 21.65 0.30 -62.89 16 2 C -0.06 -3.67 5.50 84.86 0.47 -3.20 16 3 Si 0.95 43.38 27.68 68.60 1.90 45.28 16 4 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 5 H -0.30 -14.53 7.11 99.48 0.71 -13.83 16 6 H -0.25 -9.76 6.60 99.48 0.66 -9.11 16 7 C -0.21 -11.53 9.75 84.03 0.82 -10.71 16 8 H 0.04 2.78 8.06 -2.91 -0.02 2.76 16 9 N -0.72 -30.40 4.28 -300.96 -1.29 -31.69 16 10 C 0.16 5.50 0.94 4.13 0.00 5.50 16 11 C 0.13 4.74 5.05 86.38 0.44 5.17 16 12 N -0.69 -24.15 5.37 -463.07 -2.49 -26.64 16 13 C 0.53 19.56 7.61 87.66 0.67 20.22 16 14 O -0.60 -26.28 16.32 -3.04 -0.05 -26.33 16 15 C -0.18 -5.01 5.74 -11.54 -0.07 -5.08 16 16 H 0.13 3.39 8.14 -2.39 -0.02 3.37 16 17 C -0.12 -2.63 6.64 -10.08 -0.07 -2.70 16 18 H 0.11 2.49 8.14 -2.39 -0.02 2.47 16 19 C -0.09 -1.43 6.62 31.67 0.21 -1.22 16 20 C -0.12 -1.65 6.91 31.88 0.22 -1.43 16 21 C -0.10 -1.89 6.63 31.67 0.21 -1.68 16 22 C -0.14 -3.71 6.39 -10.08 -0.06 -3.78 16 23 H 0.10 2.98 7.78 -2.39 -0.02 2.96 16 24 C -0.12 -3.07 7.37 31.12 0.23 -2.84 16 25 C -0.12 -3.23 7.99 31.12 0.25 -2.98 16 26 C -0.15 -5.05 7.28 31.12 0.23 -4.83 16 27 H 0.26 15.65 8.31 -92.71 -0.77 14.87 16 28 H 0.37 14.63 5.80 -92.71 -0.54 14.09 16 29 H 0.08 2.44 7.89 -2.39 -0.02 2.42 16 30 H 0.02 1.05 8.13 -2.39 -0.02 1.03 16 31 H 0.41 12.96 8.05 -92.71 -0.75 12.21 16 32 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 38 H 0.11 2.20 7.93 -2.39 -0.02 2.18 16 39 H 0.08 1.76 8.10 -2.38 -0.02 1.74 16 40 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 41 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 42 H 0.04 1.68 7.85 -2.38 -0.02 1.66 16 43 H 0.09 2.63 8.10 -2.39 -0.02 2.61 16 Total: -1.00 -72.57 346.26 1.58 -70.98 By element: Atomic # 1 Polarization: 41.16 SS G_CDS: -0.33 Total: 40.82 kcal Atomic # 6 Polarization: -13.09 SS G_CDS: 3.54 Total: -9.55 kcal Atomic # 7 Polarization: -117.74 SS G_CDS: -3.47 Total: -121.21 kcal Atomic # 8 Polarization: -26.28 SS G_CDS: -0.05 Total: -26.33 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 1.90 Total: 45.28 kcal Total: -72.57 1.58 -70.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273061593.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.750 kcal (2) G-P(sol) polarization free energy of solvation -72.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds