Wall clock time and date at job start Tue Mar 31 2020 00:48:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86804 * 120.00098 * 2 1 4 4 H 1.48496 * 109.46828 * 269.99734 * 3 2 1 5 5 H 1.48502 * 109.46863 * 29.99667 * 3 2 1 6 6 H 1.48497 * 109.47049 * 149.99881 * 3 2 1 7 7 C 1.38810 * 120.00062 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99964 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00129 * 0.02562 * 7 2 1 10 10 C 1.46502 * 120.00102 * 175.10038 * 9 7 2 11 11 C 1.52996 * 115.55154 * 39.89884 * 10 9 7 12 12 N 1.46503 * 109.46867 * 80.45415 * 11 10 9 13 13 C 1.34771 * 120.00138 * 184.97506 * 12 11 10 14 14 O 1.21287 * 119.99961 * 359.97438 * 13 12 11 15 15 C 1.50701 * 120.00333 * 179.97438 * 13 12 11 16 16 H 1.09005 * 109.61398 * 59.63898 * 15 13 12 17 17 C 1.53299 * 109.61974 * 299.09542 * 15 13 12 18 18 C 1.52875 * 108.58813 * 165.82667 * 17 15 13 19 19 C 1.52070 * 110.51901 * 54.88555 * 18 17 15 20 20 H 1.08991 * 114.63807 * 193.15920 * 19 18 17 21 21 C 1.52312 * 119.83942 * 49.55070 * 19 18 17 22 22 C 1.52073 * 120.01747 * 338.29967 * 19 18 17 23 23 H 1.09000 * 117.25225 * 215.56634 * 22 19 18 24 24 C 1.52706 * 120.52245 * 5.29385 * 22 19 18 25 25 C 1.52995 * 117.49789 * 185.57685 * 10 9 7 26 26 C 1.53001 * 60.03524 * 107.49421 * 25 10 9 27 27 H 0.97000 * 119.99880 * 0.02562 * 1 2 3 28 28 H 0.96996 * 119.99609 * 355.09603 * 9 7 2 29 29 H 1.09004 * 109.46946 * 200.44905 * 11 10 9 30 30 H 1.08995 * 109.47827 * 320.45265 * 11 10 9 31 31 H 0.97001 * 120.00026 * 4.97139 * 12 11 10 32 32 H 1.08998 * 109.61487 * 285.55312 * 17 15 13 33 33 H 1.09000 * 109.61777 * 46.09352 * 17 15 13 34 34 H 1.08999 * 109.26454 * 294.61362 * 18 17 15 35 35 H 1.09000 * 109.23436 * 175.13435 * 18 17 15 36 36 H 1.08994 * 117.53266 * 142.80502 * 21 19 18 37 37 H 1.08992 * 117.53623 * 357.55727 * 21 19 18 38 38 H 1.09005 * 109.35572 * 218.31561 * 24 22 19 39 39 H 1.08997 * 109.35923 * 98.73671 * 24 22 19 40 40 H 1.09001 * 117.50163 * 214.99910 * 25 10 9 41 41 H 1.09002 * 117.50042 * 359.97438 * 25 10 9 42 42 H 1.08999 * 117.49654 * 107.49743 * 26 25 10 43 43 H 1.08995 * 117.50136 * 252.52439 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0541 -3.6545 -0.1073 11 6 3.3628 -3.7321 0.6814 12 7 3.0695 -4.0250 2.0866 13 6 4.0660 -4.0410 2.9938 14 8 5.2057 -3.8133 2.6469 15 6 3.7643 -4.3417 4.4394 16 1 3.3137 -5.3309 4.5210 17 6 2.8013 -3.2860 4.9946 18 6 2.2351 -3.7925 6.3212 19 6 3.3606 -4.1506 7.2791 20 1 3.0493 -4.7247 8.1517 21 6 4.4932 -3.1614 7.5213 22 6 4.7487 -4.4598 6.7404 23 1 5.3247 -5.2280 7.2564 24 6 5.0574 -4.2979 5.2536 25 6 1.2281 -4.9361 -0.2333 26 6 1.9897 -4.3956 -1.4452 27 1 -0.4850 0.8401 -0.0004 28 1 0.3582 -2.3896 0.0720 29 1 3.9894 -4.5228 0.2686 30 1 3.8869 -2.7790 0.6107 31 1 2.1581 -4.2074 2.3640 32 1 3.3380 -2.3516 5.1588 33 1 1.9879 -3.1246 4.2873 34 1 1.6243 -4.6764 6.1375 35 1 1.6164 -3.0144 6.7681 36 1 4.8956 -3.0937 8.5319 37 1 4.4771 -2.2290 6.9571 38 1 5.7149 -5.1053 4.9311 39 1 5.5552 -3.3422 5.0899 40 1 1.6170 -5.8347 0.2457 41 1 0.1426 -4.8372 -0.2355 42 1 2.8796 -4.9385 -1.7634 43 1 1.4053 -3.9405 -2.2448 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277101344.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:48:55 Heat of formation + Delta-G solvation = 7.797600 kcal Electronic energy + Delta-G solvation = -22143.391287 eV Core-core repulsion = 18996.518258 eV Total energy + Delta-G solvation = -3146.873029 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.28170 -38.66286 -37.40138 -33.80475 -33.16768 -32.95180 -30.83902 -29.76266 -26.96692 -24.66905 -23.92088 -23.31853 -21.84536 -21.20055 -19.93511 -19.16552 -18.46231 -17.32656 -16.89213 -16.11200 -15.68942 -15.21424 -14.77324 -14.23554 -13.96927 -13.95497 -13.72848 -13.39390 -13.16705 -12.92757 -12.64108 -12.18509 -12.01997 -11.88876 -11.49774 -11.24375 -11.05799 -11.02764 -10.96708 -10.91348 -10.60579 -10.43469 -10.27061 -9.83318 -9.75079 -9.71879 -9.51223 -9.38734 -8.80222 -8.53182 -7.02240 -5.87163 -3.16691 2.99122 3.39660 3.45961 3.47951 3.49025 3.67016 4.43880 4.52417 4.61508 4.66731 4.70857 4.89007 5.00453 5.05991 5.20333 5.24313 5.29402 5.36615 5.47078 5.47837 5.60539 5.62404 5.64864 5.70432 5.81072 5.87865 5.99473 6.06987 6.10374 6.14126 6.18529 6.25308 6.27181 6.33284 6.44328 6.55523 6.61826 6.76194 6.91148 7.67044 7.94384 8.30440 8.61820 9.42503 9.94492 10.29784 11.34595 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.015062 B = 0.005115 C = 0.004382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.558798 B = 5472.680177 C = 6388.221516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.007 4.007 3 Si 0.906 3.094 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.242 4.242 8 H 0.075 0.925 9 N -0.683 5.683 10 C 0.141 3.859 11 C 0.152 3.848 12 N -0.709 5.709 13 C 0.513 3.487 14 O -0.551 6.551 15 C -0.103 4.103 16 H 0.096 0.904 17 C -0.115 4.115 18 C -0.087 4.087 19 C -0.139 4.139 20 H 0.096 0.904 21 C -0.186 4.186 22 C -0.146 4.146 23 H 0.101 0.899 24 C -0.068 4.068 25 C -0.196 4.196 26 C -0.208 4.208 27 H 0.257 0.743 28 H 0.389 0.611 29 H 0.058 0.942 30 H 0.082 0.918 31 H 0.400 0.600 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.090 0.910 37 H 0.096 0.904 38 H 0.070 0.930 39 H 0.075 0.925 40 H 0.086 0.914 41 H 0.089 0.911 42 H 0.081 0.919 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.253 -11.509 12.025 17.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.203 4.203 3 Si 0.737 3.263 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.372 4.372 8 H 0.092 0.908 9 N -0.321 5.321 10 C 0.046 3.954 11 C 0.028 3.972 12 N -0.359 5.359 13 C 0.299 3.701 14 O -0.430 6.430 15 C -0.124 4.124 16 H 0.114 0.886 17 C -0.153 4.153 18 C -0.124 4.124 19 C -0.158 4.158 20 H 0.114 0.886 21 C -0.223 4.223 22 C -0.165 4.165 23 H 0.119 0.881 24 C -0.106 4.106 25 C -0.235 4.235 26 C -0.251 4.251 27 H 0.066 0.934 28 H 0.224 0.776 29 H 0.076 0.924 30 H 0.100 0.900 31 H 0.234 0.766 32 H 0.089 0.911 33 H 0.096 0.904 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.108 0.892 37 H 0.114 0.886 38 H 0.089 0.911 39 H 0.094 0.906 40 H 0.105 0.895 41 H 0.108 0.892 42 H 0.099 0.901 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 5.167 -11.121 11.779 17.003 hybrid contribution -0.427 0.833 0.041 0.938 sum 4.739 -10.288 11.820 16.371 Atomic orbital electron populations 1.69659 1.05135 1.25925 1.57062 1.24742 0.95487 0.97752 1.02356 0.86203 0.78838 0.83610 0.77694 1.21509 1.21702 1.20547 1.19193 0.91246 0.83490 1.43313 0.90761 1.41854 1.05793 0.98671 1.85733 1.20154 0.92988 0.85837 0.96389 1.21030 0.95487 1.01314 0.79383 1.45885 1.10647 1.70706 1.08639 1.20549 0.85139 0.76827 0.87555 1.90667 1.21347 1.49633 1.81318 1.21316 0.98427 1.01096 0.91593 0.88627 1.21640 0.98730 0.97961 0.96965 1.20854 0.96204 1.01247 0.94089 1.21837 0.90079 1.03061 1.00788 0.88558 1.23163 1.03493 0.94421 1.01248 1.22255 0.99133 0.99362 0.95711 0.88117 1.20818 0.95660 1.03502 0.90610 1.23124 0.98768 0.97615 1.03991 1.23567 1.02030 1.05810 0.93646 0.93364 0.77626 0.92395 0.89962 0.76560 0.91088 0.90430 0.91226 0.91100 0.89194 0.88581 0.91124 0.90642 0.89523 0.89244 0.90066 0.88994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.16 13.06 55.49 0.72 -26.44 16 2 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 3 Si 0.91 22.25 29.55 -169.99 -5.02 17.23 16 4 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.24 -6.47 9.52 -15.06 -0.14 -6.61 16 8 H 0.07 1.99 6.26 -52.48 -0.33 1.66 16 9 N -0.68 -16.21 5.61 -47.19 -0.26 -16.48 16 10 C 0.14 2.69 2.45 -131.78 -0.32 2.37 16 11 C 0.15 2.81 5.51 -4.04 -0.02 2.79 16 12 N -0.71 -11.48 5.31 -60.29 -0.32 -11.80 16 13 C 0.51 8.41 7.15 -10.99 -0.08 8.33 16 14 O -0.55 -11.05 15.91 5.55 0.09 -10.96 16 15 C -0.10 -1.29 2.50 -91.68 -0.23 -1.52 16 16 H 0.10 1.02 8.05 -51.93 -0.42 0.61 16 17 C -0.12 -1.39 5.02 -26.64 -0.13 -1.53 16 18 C -0.09 -0.85 5.93 -27.27 -0.16 -1.01 16 19 C -0.14 -1.32 6.00 -91.92 -0.55 -1.87 16 20 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 21 C -0.19 -1.83 9.66 -26.74 -0.26 -2.09 16 22 C -0.15 -1.47 6.19 -90.90 -0.56 -2.03 16 23 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 24 C -0.07 -0.83 4.49 -26.95 -0.12 -0.95 16 25 C -0.20 -3.09 10.02 -26.73 -0.27 -3.36 16 26 C -0.21 -3.60 10.11 -26.69 -0.27 -3.87 16 27 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 28 H 0.39 9.82 7.99 -40.82 -0.33 9.49 16 29 H 0.06 1.00 7.95 -51.93 -0.41 0.59 16 30 H 0.08 1.78 6.28 -51.93 -0.33 1.45 16 31 H 0.40 5.82 7.82 -40.82 -0.32 5.50 16 32 H 0.07 0.95 7.11 -51.93 -0.37 0.58 16 33 H 0.08 1.00 7.33 -51.93 -0.38 0.62 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.10 1.04 7.26 -51.93 -0.38 0.66 16 38 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.07 1.05 7.84 -51.93 -0.41 0.65 16 40 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 42 H 0.08 1.26 8.08 -51.93 -0.42 0.84 16 43 H 0.09 1.70 8.14 -51.93 -0.42 1.28 16 LS Contribution 344.37 15.07 5.19 5.19 Total: -1.00 -30.18 344.37 -9.85 -40.03 By element: Atomic # 1 Polarization: 21.88 SS G_CDS: -7.02 Total: 14.86 kcal Atomic # 6 Polarization: -8.42 SS G_CDS: -3.22 Total: -11.64 kcal Atomic # 7 Polarization: -54.85 SS G_CDS: 0.14 Total: -54.71 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: 0.09 Total: -10.96 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.18 -9.85 -40.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277101344.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.827 kcal (2) G-P(sol) polarization free energy of solvation -30.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds