Wall clock time and date at job start Tue Mar 31 2020 00:48:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86804 * 120.00098 * 2 1 4 4 H 1.48496 * 109.46828 * 269.99734 * 3 2 1 5 5 H 1.48502 * 109.46863 * 29.99667 * 3 2 1 6 6 H 1.48497 * 109.47049 * 149.99881 * 3 2 1 7 7 C 1.38810 * 120.00062 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99964 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00129 * 0.02562 * 7 2 1 10 10 C 1.46502 * 120.00102 * 175.10038 * 9 7 2 11 11 C 1.52996 * 115.55154 * 39.89884 * 10 9 7 12 12 N 1.46503 * 109.46867 * 80.45415 * 11 10 9 13 13 C 1.34771 * 120.00138 * 184.97506 * 12 11 10 14 14 O 1.21287 * 119.99961 * 359.97438 * 13 12 11 15 15 C 1.50701 * 120.00333 * 179.97438 * 13 12 11 16 16 H 1.09005 * 109.61398 * 59.63898 * 15 13 12 17 17 C 1.53299 * 109.61974 * 299.09542 * 15 13 12 18 18 C 1.52875 * 108.58813 * 165.82667 * 17 15 13 19 19 C 1.52070 * 110.51901 * 54.88555 * 18 17 15 20 20 H 1.08991 * 114.63807 * 193.15920 * 19 18 17 21 21 C 1.52312 * 119.83942 * 49.55070 * 19 18 17 22 22 C 1.52073 * 120.01747 * 338.29967 * 19 18 17 23 23 H 1.09000 * 117.25225 * 215.56634 * 22 19 18 24 24 C 1.52706 * 120.52245 * 5.29385 * 22 19 18 25 25 C 1.52995 * 117.49789 * 185.57685 * 10 9 7 26 26 C 1.53001 * 60.03524 * 107.49421 * 25 10 9 27 27 H 0.97000 * 119.99880 * 0.02562 * 1 2 3 28 28 H 0.96996 * 119.99609 * 355.09603 * 9 7 2 29 29 H 1.09004 * 109.46946 * 200.44905 * 11 10 9 30 30 H 1.08995 * 109.47827 * 320.45265 * 11 10 9 31 31 H 0.97001 * 120.00026 * 4.97139 * 12 11 10 32 32 H 1.08998 * 109.61487 * 285.55312 * 17 15 13 33 33 H 1.09000 * 109.61777 * 46.09352 * 17 15 13 34 34 H 1.08999 * 109.26454 * 294.61362 * 18 17 15 35 35 H 1.09000 * 109.23436 * 175.13435 * 18 17 15 36 36 H 1.08994 * 117.53266 * 142.80502 * 21 19 18 37 37 H 1.08992 * 117.53623 * 357.55727 * 21 19 18 38 38 H 1.09005 * 109.35572 * 218.31561 * 24 22 19 39 39 H 1.08997 * 109.35923 * 98.73671 * 24 22 19 40 40 H 1.09001 * 117.50163 * 214.99910 * 25 10 9 41 41 H 1.09002 * 117.50042 * 359.97438 * 25 10 9 42 42 H 1.08999 * 117.49654 * 107.49743 * 26 25 10 43 43 H 1.08995 * 117.50136 * 252.52439 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0541 -3.6545 -0.1073 11 6 3.3628 -3.7321 0.6814 12 7 3.0695 -4.0250 2.0866 13 6 4.0660 -4.0410 2.9938 14 8 5.2057 -3.8133 2.6469 15 6 3.7643 -4.3417 4.4394 16 1 3.3137 -5.3309 4.5210 17 6 2.8013 -3.2860 4.9946 18 6 2.2351 -3.7925 6.3212 19 6 3.3606 -4.1506 7.2791 20 1 3.0493 -4.7247 8.1517 21 6 4.4932 -3.1614 7.5213 22 6 4.7487 -4.4598 6.7404 23 1 5.3247 -5.2280 7.2564 24 6 5.0574 -4.2979 5.2536 25 6 1.2281 -4.9361 -0.2333 26 6 1.9897 -4.3956 -1.4452 27 1 -0.4850 0.8401 -0.0004 28 1 0.3582 -2.3896 0.0720 29 1 3.9894 -4.5228 0.2686 30 1 3.8869 -2.7790 0.6107 31 1 2.1581 -4.2074 2.3640 32 1 3.3380 -2.3516 5.1588 33 1 1.9879 -3.1246 4.2873 34 1 1.6243 -4.6764 6.1375 35 1 1.6164 -3.0144 6.7681 36 1 4.8956 -3.0937 8.5319 37 1 4.4771 -2.2290 6.9571 38 1 5.7149 -5.1053 4.9311 39 1 5.5552 -3.3422 5.0899 40 1 1.6170 -5.8347 0.2457 41 1 0.1426 -4.8372 -0.2355 42 1 2.8796 -4.9385 -1.7634 43 1 1.4053 -3.9405 -2.2448 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277101344.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:48:54 Heat of formation + Delta-G solvation = -10.674411 kcal Electronic energy + Delta-G solvation = -22144.192293 eV Core-core repulsion = 18996.518258 eV Total energy + Delta-G solvation = -3147.674035 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.40665 -39.82845 -38.85023 -35.31515 -34.93133 -34.03305 -31.74498 -31.70026 -28.33388 -25.96955 -25.64371 -24.35129 -23.19275 -22.01529 -21.23545 -20.64679 -19.41581 -19.23070 -18.19426 -17.22478 -17.07403 -16.58265 -16.21369 -15.78992 -15.63070 -14.93709 -14.81726 -14.71015 -14.60770 -14.24471 -13.59517 -13.58593 -13.49772 -13.05880 -12.99631 -12.87859 -12.39906 -12.32519 -12.23066 -12.18235 -12.09258 -11.93874 -11.66217 -11.52323 -11.05563 -10.88521 -10.63524 -10.56048 -10.52340 -9.97894 -8.94057 -7.99529 -5.26526 1.42547 1.43547 1.51444 1.67210 2.22767 2.49851 2.85637 3.10815 3.40393 3.61786 3.64450 3.76981 3.79755 3.84232 4.02233 4.04251 4.12634 4.19261 4.30070 4.35469 4.45287 4.58937 4.68115 4.73370 4.82238 4.83805 4.93233 4.94855 5.01757 5.04293 5.14234 5.14802 5.20588 5.28200 5.34765 5.37401 5.38316 5.41674 5.53273 5.54114 6.23388 6.64033 7.30243 7.30969 8.02207 8.26204 9.22901 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.015062 B = 0.005115 C = 0.004382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.558798 B = 5472.680177 C = 6388.221516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.962 5.962 2 C -0.064 4.064 3 Si 0.959 3.041 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.280 1.280 7 C -0.231 4.231 8 H 0.068 0.932 9 N -0.694 5.694 10 C 0.110 3.890 11 C 0.162 3.838 12 N -0.703 5.703 13 C 0.508 3.492 14 O -0.593 6.593 15 C -0.092 4.092 16 H 0.125 0.875 17 C -0.113 4.113 18 C -0.084 4.084 19 C -0.130 4.130 20 H 0.119 0.881 21 C -0.194 4.194 22 C -0.147 4.147 23 H 0.119 0.881 24 C -0.066 4.066 25 C -0.160 4.160 26 C -0.204 4.204 27 H 0.252 0.748 28 H 0.379 0.621 29 H 0.074 0.926 30 H 0.042 0.958 31 H 0.410 0.590 32 H 0.049 0.951 33 H 0.067 0.933 34 H 0.089 0.911 35 H 0.074 0.926 36 H 0.105 0.895 37 H 0.077 0.923 38 H 0.069 0.931 39 H 0.047 0.953 40 H 0.119 0.881 41 H 0.092 0.908 42 H 0.104 0.896 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.048 -13.771 13.343 19.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.612 5.612 2 C -0.256 4.256 3 Si 0.789 3.211 4 H -0.213 1.213 5 H -0.218 1.218 6 H -0.205 1.205 7 C -0.363 4.363 8 H 0.086 0.914 9 N -0.331 5.331 10 C 0.017 3.983 11 C 0.037 3.963 12 N -0.353 5.353 13 C 0.296 3.704 14 O -0.474 6.474 15 C -0.113 4.113 16 H 0.143 0.857 17 C -0.151 4.151 18 C -0.121 4.121 19 C -0.148 4.148 20 H 0.137 0.863 21 C -0.231 4.231 22 C -0.165 4.165 23 H 0.137 0.863 24 C -0.104 4.104 25 C -0.198 4.198 26 C -0.245 4.245 27 H 0.061 0.939 28 H 0.212 0.788 29 H 0.092 0.908 30 H 0.060 0.940 31 H 0.246 0.754 32 H 0.068 0.932 33 H 0.086 0.914 34 H 0.108 0.892 35 H 0.093 0.907 36 H 0.124 0.876 37 H 0.096 0.904 38 H 0.088 0.912 39 H 0.066 0.934 40 H 0.137 0.863 41 H 0.110 0.890 42 H 0.122 0.878 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 4.972 -13.430 13.095 19.405 hybrid contribution -0.303 1.467 -0.414 1.554 sum 4.669 -11.964 12.681 18.048 Atomic orbital electron populations 1.69771 1.06141 1.26003 1.59300 1.25354 0.96217 1.00354 1.03718 0.85356 0.77649 0.80610 0.77478 1.21344 1.21841 1.20536 1.19378 0.91100 0.84855 1.40929 0.91418 1.41862 1.05376 0.99594 1.86290 1.20373 0.94054 0.85546 0.98317 1.20797 0.95017 0.99798 0.80726 1.45847 1.11236 1.70263 1.07907 1.21304 0.84400 0.75658 0.89032 1.90646 1.23069 1.51454 1.82214 1.21331 0.98894 1.02518 0.88587 0.85690 1.21601 0.98031 0.97095 0.98368 1.20868 0.96543 1.02129 0.92547 1.21930 0.89366 1.02458 1.01078 0.86288 1.23195 1.04442 0.93725 1.01768 1.22229 1.00251 1.00014 0.94044 0.86322 1.20760 0.95273 1.01955 0.92435 1.23197 0.98639 0.96306 1.01679 1.23551 1.03054 1.05131 0.92777 0.93931 0.78754 0.90837 0.93985 0.75404 0.93249 0.91409 0.89212 0.90731 0.87648 0.90408 0.91230 0.93427 0.86284 0.88963 0.87796 0.90524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -57.23 13.06 21.65 0.28 -56.94 16 2 C -0.06 -3.60 5.50 84.86 0.47 -3.13 16 3 Si 0.96 46.73 29.55 68.60 2.03 48.76 16 4 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 5 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 6 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 7 C -0.23 -12.57 9.52 84.03 0.80 -11.77 16 8 H 0.07 3.73 6.26 -2.91 -0.02 3.71 16 9 N -0.69 -33.17 5.61 -303.23 -1.70 -34.87 16 10 C 0.11 4.07 2.45 3.63 0.01 4.07 16 11 C 0.16 5.90 5.51 86.38 0.48 6.38 16 12 N -0.70 -22.19 5.31 -463.06 -2.46 -24.65 16 13 C 0.51 16.52 7.15 87.66 0.63 17.15 16 14 O -0.59 -24.21 15.91 -3.05 -0.05 -24.26 16 15 C -0.09 -2.19 2.50 -11.48 -0.03 -2.22 16 16 H 0.13 2.28 8.05 -2.38 -0.02 2.26 16 17 C -0.11 -2.64 5.02 30.65 0.15 -2.49 16 18 C -0.08 -1.43 5.93 30.25 0.18 -1.25 16 19 C -0.13 -2.07 6.00 -11.63 -0.07 -2.14 16 20 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 21 C -0.19 -3.53 9.66 30.59 0.30 -3.24 16 22 C -0.15 -2.65 6.19 -10.98 -0.07 -2.72 16 23 H 0.12 1.75 8.14 -2.39 -0.02 1.73 16 24 C -0.07 -1.57 4.49 30.46 0.14 -1.44 16 25 C -0.16 -4.56 10.02 30.59 0.31 -4.25 16 26 C -0.20 -6.62 10.11 30.62 0.31 -6.31 16 27 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 28 H 0.38 19.34 7.99 -92.71 -0.74 18.60 16 29 H 0.07 2.44 7.95 -2.38 -0.02 2.42 16 30 H 0.04 1.87 6.28 -2.39 -0.02 1.86 16 31 H 0.41 11.30 7.82 -92.71 -0.72 10.58 16 32 H 0.05 1.35 7.11 -2.39 -0.02 1.34 16 33 H 0.07 1.71 7.33 -2.39 -0.02 1.69 16 34 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.08 1.70 7.26 -2.39 -0.02 1.68 16 38 H 0.07 1.64 8.14 -2.38 -0.02 1.63 16 39 H 0.05 1.38 7.84 -2.39 -0.02 1.36 16 40 H 0.12 2.68 8.14 -2.39 -0.02 2.66 16 41 H 0.09 2.64 8.14 -2.39 -0.02 2.63 16 42 H 0.10 2.91 8.08 -2.39 -0.02 2.89 16 43 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 Total: -1.00 -66.75 344.37 1.25 -65.51 By element: Atomic # 1 Polarization: 40.26 SS G_CDS: -0.45 Total: 39.81 kcal Atomic # 6 Polarization: -16.95 SS G_CDS: 3.59 Total: -13.36 kcal Atomic # 7 Polarization: -112.58 SS G_CDS: -3.88 Total: -116.46 kcal Atomic # 8 Polarization: -24.21 SS G_CDS: -0.05 Total: -24.26 kcal Atomic # 14 Polarization: 46.73 SS G_CDS: 2.03 Total: 48.76 kcal Total: -66.75 1.25 -65.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277101344.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.835 kcal (2) G-P(sol) polarization free energy of solvation -66.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds