Wall clock time and date at job start Tue Mar 31 2020 00:48:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86806 * 119.99802 * 2 1 4 4 H 1.48496 * 109.47115 * 270.00035 * 3 2 1 5 5 H 1.48503 * 109.46815 * 29.99776 * 3 2 1 6 6 H 1.48502 * 109.47108 * 149.99718 * 3 2 1 7 7 C 1.38811 * 120.00300 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99865 * 180.02562 * 7 2 1 9 9 N 1.36930 * 119.99845 * 359.97438 * 7 2 1 10 10 C 1.46509 * 119.99624 * 173.16978 * 9 7 2 11 11 C 1.53002 * 115.55041 * 294.63469 * 10 9 7 12 12 N 1.46502 * 109.47217 * 279.55978 * 11 10 9 13 13 C 1.34775 * 120.00161 * 176.04840 * 12 11 10 14 14 O 1.21288 * 119.99698 * 0.02562 * 13 12 11 15 15 C 1.50692 * 120.00095 * 179.97438 * 13 12 11 16 16 H 1.09000 * 109.61700 * 59.64356 * 15 13 12 17 17 C 1.53307 * 109.61742 * 299.10104 * 15 13 12 18 18 C 1.50931 * 108.41870 * 166.06408 * 17 15 13 19 19 C 1.52709 * 111.20973 * 54.44906 * 18 17 15 20 20 H 1.09005 * 115.39461 * 127.55133 * 19 18 17 21 21 C 1.53651 * 116.03004 * 270.17450 * 19 18 17 22 22 C 1.52072 * 119.79645 * 338.68855 * 19 18 17 23 23 H 1.09009 * 115.92823 * 148.93451 * 22 19 18 24 24 C 1.52069 * 120.02035 * 4.96265 * 22 19 18 25 25 C 1.52999 * 117.49825 * 80.30773 * 10 9 7 26 26 C 1.53001 * 117.49513 * 148.96834 * 10 9 7 27 27 H 0.96999 * 120.00761 * 0.02562 * 1 2 3 28 28 H 0.96997 * 120.00512 * 353.17291 * 9 7 2 29 29 H 1.08994 * 109.46892 * 159.55862 * 11 10 9 30 30 H 1.09004 * 109.46916 * 39.55673 * 11 10 9 31 31 H 0.96999 * 119.99630 * 356.04483 * 12 11 10 32 32 H 1.09003 * 109.61328 * 285.55264 * 17 15 13 33 33 H 1.08991 * 109.61847 * 45.91555 * 17 15 13 34 34 H 1.08997 * 108.51854 * 294.12001 * 18 17 15 35 35 H 1.09003 * 109.12562 * 175.16855 * 18 17 15 36 36 H 1.09001 * 117.53913 * 218.19770 * 21 19 18 37 37 H 1.09005 * 117.53919 * 3.44179 * 21 19 18 38 38 H 1.09002 * 109.26365 * 98.56628 * 24 22 19 39 39 H 1.08995 * 109.26971 * 218.03056 * 24 22 19 40 40 H 1.08998 * 117.49944 * 214.99864 * 25 10 9 41 41 H 1.08998 * 117.49796 * 0.02562 * 25 10 9 42 42 H 1.08994 * 117.50324 * 359.97292 * 26 10 9 43 43 H 1.08999 * 117.49596 * 144.99756 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4474 2.6527 0.7000 6 1 3.5476 1.4403 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2020 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0504 -3.6522 -0.1520 11 6 2.7437 -3.8579 -1.5003 12 7 1.7618 -4.3064 -2.4909 13 6 2.1304 -4.4763 -3.7761 14 8 3.2751 -4.2582 -4.1125 15 6 1.1206 -4.9382 -4.7948 16 1 0.2989 -4.2238 -4.8455 17 6 0.5839 -6.3184 -4.3984 18 6 -0.6502 -6.6039 -5.2190 19 6 -0.3645 -6.4656 -6.7128 20 1 -0.6509 -7.3211 -7.3246 21 6 -0.5814 -5.0684 -7.3142 22 6 0.8238 -5.6407 -7.1817 23 1 1.2946 -5.9673 -8.1091 24 6 1.7886 -5.0502 -6.1653 25 6 2.7354 -4.2269 1.0895 26 6 1.4687 -4.8871 0.5390 27 1 -0.4851 0.8400 -0.0004 28 1 0.3608 -2.3911 0.0997 29 1 3.5247 -4.6110 -1.3961 30 1 3.1870 -2.9176 -1.8282 31 1 0.8465 -4.4812 -2.2217 32 1 1.3397 -7.0771 -4.6017 33 1 0.3363 -6.3237 -3.3370 34 1 -1.4277 -5.8957 -4.9328 35 1 -0.9922 -7.6173 -5.0090 36 1 -1.0101 -5.0114 -8.3148 37 1 -0.8647 -4.2652 -6.6338 38 1 2.6657 -5.6926 -6.0865 39 1 2.0981 -4.0590 -6.4967 40 1 3.6798 -4.7516 0.9458 41 1 2.6464 -3.6647 2.0191 42 1 0.5471 -4.7589 1.1067 43 1 1.5800 -5.8461 0.0331 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277101346.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:48:58 Heat of formation + Delta-G solvation = 7.091538 kcal Electronic energy + Delta-G solvation = -21992.300098 eV Core-core repulsion = 18845.396452 eV Total energy + Delta-G solvation = -3146.903646 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.36660 -38.67010 -37.40062 -33.85107 -33.21517 -32.93245 -30.95212 -29.70652 -27.01607 -24.68647 -23.89375 -23.20822 -21.92386 -21.37752 -19.94454 -19.17348 -18.50718 -17.30939 -17.04023 -15.79703 -15.69598 -14.96572 -14.89394 -14.45969 -14.16833 -13.99818 -13.72411 -13.55052 -13.15591 -13.07758 -12.62622 -12.23928 -12.01920 -11.89711 -11.58027 -11.24945 -11.06231 -10.98726 -10.98135 -10.90660 -10.67580 -10.26842 -10.23069 -9.90469 -9.79101 -9.76784 -9.52241 -9.26119 -8.84819 -8.54807 -7.07157 -5.84782 -3.15255 2.99367 3.41271 3.47285 3.47920 3.49182 3.63258 4.40630 4.44204 4.57175 4.58507 4.73448 4.83032 4.96792 5.00581 5.19133 5.22816 5.30531 5.34700 5.37747 5.44559 5.53379 5.62674 5.64823 5.73057 5.82006 5.83036 5.91180 5.98658 6.06838 6.08554 6.11345 6.23148 6.25867 6.28004 6.41395 6.55876 6.69334 6.75303 6.91419 7.69294 7.93940 8.33932 8.61443 9.44972 9.98358 10.33927 11.37142 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.017911 B = 0.004398 C = 0.003999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.902802 B = 6365.615930 C = 6999.464408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.008 4.008 3 Si 0.907 3.093 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.239 4.239 8 H 0.072 0.928 9 N -0.688 5.688 10 C 0.129 3.871 11 C 0.147 3.853 12 N -0.710 5.710 13 C 0.515 3.485 14 O -0.551 6.551 15 C -0.109 4.109 16 H 0.097 0.903 17 C -0.109 4.109 18 C -0.089 4.089 19 C -0.150 4.150 20 H 0.101 0.899 21 C -0.184 4.184 22 C -0.138 4.138 23 H 0.099 0.901 24 C -0.068 4.068 25 C -0.188 4.188 26 C -0.187 4.187 27 H 0.256 0.744 28 H 0.387 0.613 29 H 0.055 0.945 30 H 0.078 0.922 31 H 0.399 0.601 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.082 0.918 41 H 0.095 0.905 42 H 0.091 0.909 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.814 -15.083 -9.877 18.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.204 4.204 3 Si 0.738 3.262 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.370 4.370 8 H 0.090 0.910 9 N -0.328 5.328 10 C 0.035 3.965 11 C 0.021 3.979 12 N -0.359 5.359 13 C 0.300 3.700 14 O -0.429 6.429 15 C -0.130 4.130 16 H 0.115 0.885 17 C -0.147 4.147 18 C -0.126 4.126 19 C -0.168 4.168 20 H 0.119 0.881 21 C -0.221 4.221 22 C -0.156 4.156 23 H 0.117 0.883 24 C -0.106 4.106 25 C -0.229 4.229 26 C -0.225 4.225 27 H 0.066 0.934 28 H 0.222 0.778 29 H 0.073 0.927 30 H 0.096 0.904 31 H 0.233 0.767 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.109 0.891 37 H 0.115 0.885 38 H 0.094 0.906 39 H 0.092 0.908 40 H 0.101 0.899 41 H 0.113 0.887 42 H 0.110 0.890 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -0.897 -14.722 -10.113 17.883 hybrid contribution -0.387 0.979 0.163 1.065 sum -1.283 -13.743 -9.950 17.015 Atomic orbital electron populations 1.69653 1.05145 1.25860 1.57204 1.24762 0.95503 0.97750 1.02419 0.86194 0.78771 0.83637 0.77643 1.21581 1.21746 1.20585 1.19170 0.91167 0.83505 1.43121 0.90992 1.41772 1.06113 0.98749 1.86131 1.20180 0.98839 0.87268 0.90225 1.21241 0.89972 0.99564 0.87099 1.45900 1.14302 1.67627 1.08106 1.20488 0.89022 0.77399 0.83057 1.90666 1.20617 1.51684 1.79949 1.21386 0.98218 0.98623 0.94810 0.88510 1.21230 0.98059 0.95506 0.99857 1.20686 0.97661 1.02095 0.92158 1.22231 1.03298 0.94768 0.96502 0.88090 1.23165 0.99783 0.96875 1.02266 1.21853 0.90103 1.03105 1.00542 0.88308 1.20626 0.96951 1.01860 0.91137 1.23370 0.95069 1.04127 1.00334 1.23074 0.98322 0.96126 1.04937 0.93420 0.77803 0.92653 0.90359 0.76701 0.91161 0.91051 0.91386 0.91333 0.89093 0.88536 0.90587 0.90843 0.89911 0.88667 0.89023 0.89472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.37 13.07 55.49 0.73 -26.64 16 2 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 3 Si 0.91 22.33 29.55 -169.99 -5.02 17.31 16 4 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.24 -6.46 9.56 -15.06 -0.14 -6.60 16 8 H 0.07 1.94 7.83 -52.49 -0.41 1.52 16 9 N -0.69 -16.43 5.49 -47.23 -0.26 -16.69 16 10 C 0.13 2.45 2.16 -131.81 -0.28 2.17 16 11 C 0.15 2.72 5.72 -4.04 -0.02 2.70 16 12 N -0.71 -11.53 5.31 -60.29 -0.32 -11.85 16 13 C 0.51 8.47 7.15 -10.99 -0.08 8.39 16 14 O -0.55 -11.08 15.92 5.55 0.09 -10.99 16 15 C -0.11 -1.37 2.27 -91.68 -0.21 -1.57 16 16 H 0.10 1.20 7.12 -51.93 -0.37 0.83 16 17 C -0.11 -1.10 5.20 -27.61 -0.14 -1.24 16 18 C -0.09 -0.78 5.67 -27.92 -0.16 -0.93 16 19 C -0.15 -1.34 6.24 -90.90 -0.57 -1.90 16 20 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 21 C -0.18 -1.72 9.67 -26.75 -0.26 -1.98 16 22 C -0.14 -1.37 6.00 -91.92 -0.55 -1.92 16 23 H 0.10 0.89 8.14 -51.92 -0.42 0.47 16 24 C -0.07 -0.83 4.59 -27.27 -0.13 -0.95 16 25 C -0.19 -3.21 10.11 -26.69 -0.27 -3.47 16 26 C -0.19 -2.89 10.07 -26.69 -0.27 -3.16 16 27 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 28 H 0.39 9.79 8.05 -40.82 -0.33 9.47 16 29 H 0.06 0.96 7.94 -51.93 -0.41 0.55 16 30 H 0.08 1.72 7.79 -51.93 -0.40 1.32 16 31 H 0.40 5.81 7.82 -40.82 -0.32 5.49 16 32 H 0.07 0.72 8.04 -51.93 -0.42 0.31 16 33 H 0.07 0.69 7.32 -51.93 -0.38 0.31 16 34 H 0.07 0.60 8.06 -51.93 -0.42 0.18 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.10 0.96 7.27 -51.93 -0.38 0.59 16 38 H 0.08 0.98 7.93 -51.93 -0.41 0.57 16 39 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.08 1.25 8.08 -51.93 -0.42 0.83 16 41 H 0.09 1.74 8.14 -51.93 -0.42 1.32 16 42 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 43 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 347.26 15.07 5.23 5.23 Total: -1.00 -30.61 347.26 -9.92 -40.53 By element: Atomic # 1 Polarization: 21.09 SS G_CDS: -7.19 Total: 13.91 kcal Atomic # 6 Polarization: -7.63 SS G_CDS: -3.18 Total: -10.81 kcal Atomic # 7 Polarization: -55.32 SS G_CDS: 0.15 Total: -55.17 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: 0.09 Total: -10.99 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.61 -9.92 -40.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277101346.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.622 kcal (2) G-P(sol) polarization free energy of solvation -30.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.530 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds