Wall clock time and date at job start Tue Mar 31 2020 00:48:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86806 * 119.99802 * 2 1 4 4 H 1.48496 * 109.47115 * 270.00035 * 3 2 1 5 5 H 1.48503 * 109.46815 * 29.99776 * 3 2 1 6 6 H 1.48502 * 109.47108 * 149.99718 * 3 2 1 7 7 C 1.38811 * 120.00300 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99865 * 180.02562 * 7 2 1 9 9 N 1.36930 * 119.99845 * 359.97438 * 7 2 1 10 10 C 1.46509 * 119.99624 * 173.16978 * 9 7 2 11 11 C 1.53002 * 115.55041 * 294.63469 * 10 9 7 12 12 N 1.46502 * 109.47217 * 279.55978 * 11 10 9 13 13 C 1.34775 * 120.00161 * 176.04840 * 12 11 10 14 14 O 1.21288 * 119.99698 * 0.02562 * 13 12 11 15 15 C 1.50692 * 120.00095 * 179.97438 * 13 12 11 16 16 H 1.09000 * 109.61700 * 59.64356 * 15 13 12 17 17 C 1.53307 * 109.61742 * 299.10104 * 15 13 12 18 18 C 1.50931 * 108.41870 * 166.06408 * 17 15 13 19 19 C 1.52709 * 111.20973 * 54.44906 * 18 17 15 20 20 H 1.09005 * 115.39461 * 127.55133 * 19 18 17 21 21 C 1.53651 * 116.03004 * 270.17450 * 19 18 17 22 22 C 1.52072 * 119.79645 * 338.68855 * 19 18 17 23 23 H 1.09009 * 115.92823 * 148.93451 * 22 19 18 24 24 C 1.52069 * 120.02035 * 4.96265 * 22 19 18 25 25 C 1.52999 * 117.49825 * 80.30773 * 10 9 7 26 26 C 1.53001 * 117.49513 * 148.96834 * 10 9 7 27 27 H 0.96999 * 120.00761 * 0.02562 * 1 2 3 28 28 H 0.96997 * 120.00512 * 353.17291 * 9 7 2 29 29 H 1.08994 * 109.46892 * 159.55862 * 11 10 9 30 30 H 1.09004 * 109.46916 * 39.55673 * 11 10 9 31 31 H 0.96999 * 119.99630 * 356.04483 * 12 11 10 32 32 H 1.09003 * 109.61328 * 285.55264 * 17 15 13 33 33 H 1.08991 * 109.61847 * 45.91555 * 17 15 13 34 34 H 1.08997 * 108.51854 * 294.12001 * 18 17 15 35 35 H 1.09003 * 109.12562 * 175.16855 * 18 17 15 36 36 H 1.09001 * 117.53913 * 218.19770 * 21 19 18 37 37 H 1.09005 * 117.53919 * 3.44179 * 21 19 18 38 38 H 1.09002 * 109.26365 * 98.56628 * 24 22 19 39 39 H 1.08995 * 109.26971 * 218.03056 * 24 22 19 40 40 H 1.08998 * 117.49944 * 214.99864 * 25 10 9 41 41 H 1.08998 * 117.49796 * 0.02562 * 25 10 9 42 42 H 1.08994 * 117.50324 * 359.97292 * 26 10 9 43 43 H 1.08999 * 117.49596 * 144.99756 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4474 2.6527 0.7000 6 1 3.5476 1.4403 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2020 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0504 -3.6522 -0.1520 11 6 2.7437 -3.8579 -1.5003 12 7 1.7618 -4.3064 -2.4909 13 6 2.1304 -4.4763 -3.7761 14 8 3.2751 -4.2582 -4.1125 15 6 1.1206 -4.9382 -4.7948 16 1 0.2989 -4.2238 -4.8455 17 6 0.5839 -6.3184 -4.3984 18 6 -0.6502 -6.6039 -5.2190 19 6 -0.3645 -6.4656 -6.7128 20 1 -0.6509 -7.3211 -7.3246 21 6 -0.5814 -5.0684 -7.3142 22 6 0.8238 -5.6407 -7.1817 23 1 1.2946 -5.9673 -8.1091 24 6 1.7886 -5.0502 -6.1653 25 6 2.7354 -4.2269 1.0895 26 6 1.4687 -4.8871 0.5390 27 1 -0.4851 0.8400 -0.0004 28 1 0.3608 -2.3911 0.0997 29 1 3.5247 -4.6110 -1.3961 30 1 3.1870 -2.9176 -1.8282 31 1 0.8465 -4.4812 -2.2217 32 1 1.3397 -7.0771 -4.6017 33 1 0.3363 -6.3237 -3.3370 34 1 -1.4277 -5.8957 -4.9328 35 1 -0.9922 -7.6173 -5.0090 36 1 -1.0101 -5.0114 -8.3148 37 1 -0.8647 -4.2652 -6.6338 38 1 2.6657 -5.6926 -6.0865 39 1 2.0981 -4.0590 -6.4967 40 1 3.6798 -4.7516 0.9458 41 1 2.6464 -3.6647 2.0191 42 1 0.5471 -4.7589 1.1067 43 1 1.5800 -5.8461 0.0331 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277101346.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:48:57 Heat of formation + Delta-G solvation = -11.652720 kcal Electronic energy + Delta-G solvation = -21993.112910 eV Core-core repulsion = 18845.396452 eV Total energy + Delta-G solvation = -3147.716458 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.45396 -39.82749 -38.84337 -35.35426 -34.88033 -34.06301 -31.81003 -31.65267 -28.36491 -26.00608 -25.62571 -24.10640 -23.24282 -22.18805 -21.21373 -20.63850 -19.41167 -19.14447 -18.41959 -17.19541 -16.96510 -16.32265 -16.16722 -15.88539 -15.38281 -15.24951 -15.00799 -14.73600 -14.64808 -14.34140 -13.76142 -13.54213 -13.35840 -13.00716 -12.93787 -12.88089 -12.45780 -12.28195 -12.22068 -12.11678 -11.91935 -11.83716 -11.77230 -11.49923 -10.96032 -10.94593 -10.63759 -10.58843 -10.45556 -9.99699 -9.03159 -7.98314 -5.26670 1.43654 1.45514 1.52772 1.66901 2.21347 2.51196 2.86720 3.08759 3.37435 3.58586 3.65950 3.75933 3.77782 3.85974 4.01841 4.09089 4.14162 4.19204 4.30743 4.36003 4.47224 4.60925 4.69555 4.75617 4.82581 4.86989 4.93418 4.97990 5.00964 5.04789 5.15948 5.19507 5.20498 5.28608 5.31619 5.36647 5.38888 5.47136 5.52821 5.53462 6.25610 6.62791 7.29334 7.31579 8.05295 8.28996 9.24090 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.017911 B = 0.004398 C = 0.003999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.902802 B = 6365.615930 C = 6999.464408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.963 5.963 2 C -0.066 4.066 3 Si 0.962 3.038 4 H -0.293 1.293 5 H -0.292 1.292 6 H -0.271 1.271 7 C -0.232 4.232 8 H 0.068 0.932 9 N -0.698 5.698 10 C 0.097 3.903 11 C 0.158 3.842 12 N -0.703 5.703 13 C 0.509 3.491 14 O -0.592 6.592 15 C -0.101 4.101 16 H 0.099 0.901 17 C -0.103 4.103 18 C -0.088 4.088 19 C -0.140 4.140 20 H 0.119 0.881 21 C -0.186 4.186 22 C -0.147 4.147 23 H 0.109 0.891 24 C -0.065 4.065 25 C -0.184 4.184 26 C -0.151 4.151 27 H 0.251 0.749 28 H 0.377 0.623 29 H 0.071 0.929 30 H 0.034 0.966 31 H 0.409 0.591 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.069 0.931 35 H 0.089 0.911 36 H 0.104 0.896 37 H 0.086 0.914 38 H 0.065 0.935 39 H 0.052 0.948 40 H 0.106 0.894 41 H 0.079 0.921 42 H 0.093 0.907 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.376 -17.335 -10.106 20.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.613 5.613 2 C -0.259 4.259 3 Si 0.791 3.209 4 H -0.221 1.221 5 H -0.219 1.219 6 H -0.196 1.196 7 C -0.364 4.364 8 H 0.086 0.914 9 N -0.336 5.336 10 C 0.005 3.995 11 C 0.032 3.968 12 N -0.353 5.353 13 C 0.297 3.703 14 O -0.473 6.473 15 C -0.123 4.123 16 H 0.117 0.883 17 C -0.140 4.140 18 C -0.126 4.126 19 C -0.158 4.158 20 H 0.137 0.863 21 C -0.223 4.223 22 C -0.165 4.165 23 H 0.127 0.873 24 C -0.103 4.103 25 C -0.225 4.225 26 C -0.188 4.188 27 H 0.060 0.940 28 H 0.211 0.789 29 H 0.089 0.911 30 H 0.053 0.947 31 H 0.245 0.755 32 H 0.089 0.911 33 H 0.098 0.902 34 H 0.088 0.912 35 H 0.107 0.893 36 H 0.122 0.878 37 H 0.105 0.895 38 H 0.083 0.917 39 H 0.070 0.930 40 H 0.124 0.876 41 H 0.098 0.902 42 H 0.112 0.888 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -1.446 -17.019 -10.329 19.961 hybrid contribution -0.145 1.614 0.245 1.639 sum -1.591 -15.405 -10.085 18.481 Atomic orbital electron populations 1.69772 1.06238 1.25976 1.59338 1.25415 0.96276 1.00522 1.03658 0.85315 0.78001 0.80360 0.77180 1.22059 1.21879 1.19621 1.19408 0.91138 0.84939 1.40898 0.91439 1.41799 1.05746 0.99740 1.86341 1.20371 1.01058 0.87077 0.91011 1.20965 0.90666 0.97989 0.87167 1.45861 1.14444 1.67104 1.07896 1.21234 0.89190 0.76376 0.83477 1.90643 1.22668 1.53453 1.80580 1.21393 0.96954 1.00265 0.93653 0.88271 1.21233 0.98648 0.93433 1.00716 1.20721 0.96774 1.03375 0.91681 1.22361 1.01572 0.94958 0.96911 0.86284 1.23214 0.99066 0.97136 1.02914 1.21790 0.90130 1.04225 1.00395 0.87302 1.20550 0.97363 1.00689 0.91698 1.23384 0.97110 1.03821 0.98163 1.23166 0.97505 0.95518 1.02625 0.94006 0.78943 0.91090 0.94721 0.75509 0.91115 0.90162 0.91243 0.89274 0.87810 0.89507 0.91659 0.92968 0.87561 0.90225 0.88821 0.86135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -57.61 13.07 21.65 0.28 -57.33 16 2 C -0.07 -3.75 5.50 84.86 0.47 -3.28 16 3 Si 0.96 46.62 29.55 68.60 2.03 48.65 16 4 H -0.29 -14.28 7.11 99.48 0.71 -13.58 16 5 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 6 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 7 C -0.23 -12.71 9.56 84.03 0.80 -11.91 16 8 H 0.07 3.69 7.83 -2.91 -0.02 3.66 16 9 N -0.70 -33.47 5.49 -303.33 -1.66 -35.13 16 10 C 0.10 3.58 2.16 3.60 0.01 3.59 16 11 C 0.16 5.81 5.72 86.38 0.49 6.30 16 12 N -0.70 -22.37 5.31 -463.06 -2.46 -24.83 16 13 C 0.51 16.77 7.15 87.65 0.63 17.39 16 14 O -0.59 -24.39 15.92 -3.05 -0.05 -24.44 16 15 C -0.10 -2.47 2.27 -11.48 -0.03 -2.50 16 16 H 0.10 2.39 7.12 -2.39 -0.02 2.37 16 17 C -0.10 -1.84 5.20 30.02 0.16 -1.68 16 18 C -0.09 -1.28 5.67 29.82 0.17 -1.11 16 19 C -0.14 -2.11 6.24 -10.98 -0.07 -2.17 16 20 H 0.12 1.42 8.14 -2.38 -0.02 1.40 16 21 C -0.19 -3.14 9.67 30.58 0.30 -2.85 16 22 C -0.15 -2.71 6.00 -11.64 -0.07 -2.78 16 23 H 0.11 1.79 8.14 -2.38 -0.02 1.77 16 24 C -0.07 -1.58 4.59 30.24 0.14 -1.44 16 25 C -0.18 -5.89 10.11 30.62 0.31 -5.58 16 26 C -0.15 -4.20 10.07 30.62 0.31 -3.89 16 27 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 28 H 0.38 19.27 8.05 -92.71 -0.75 18.52 16 29 H 0.07 2.37 7.94 -2.39 -0.02 2.35 16 30 H 0.03 1.57 7.79 -2.38 -0.02 1.55 16 31 H 0.41 11.32 7.82 -92.71 -0.73 10.59 16 32 H 0.07 1.29 8.04 -2.39 -0.02 1.27 16 33 H 0.08 1.31 7.32 -2.39 -0.02 1.29 16 34 H 0.07 1.02 8.06 -2.39 -0.02 1.00 16 35 H 0.09 0.98 8.14 -2.39 -0.02 0.97 16 36 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.09 1.64 7.27 -2.38 -0.02 1.62 16 38 H 0.06 1.70 7.93 -2.39 -0.02 1.68 16 39 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.11 2.89 8.08 -2.39 -0.02 2.88 16 41 H 0.08 2.82 8.14 -2.39 -0.02 2.80 16 42 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 43 H 0.12 2.62 8.14 -2.39 -0.02 2.60 16 Total: -1.00 -67.41 347.26 1.29 -66.12 By element: Atomic # 1 Polarization: 39.34 SS G_CDS: -0.47 Total: 38.87 kcal Atomic # 6 Polarization: -15.53 SS G_CDS: 3.61 Total: -11.92 kcal Atomic # 7 Polarization: -113.45 SS G_CDS: -3.84 Total: -117.29 kcal Atomic # 8 Polarization: -24.39 SS G_CDS: -0.05 Total: -24.44 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 2.03 Total: 48.65 kcal Total: -67.41 1.29 -66.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277101346.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.471 kcal (2) G-P(sol) polarization free energy of solvation -67.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds