Wall clock time and date at job start Tue Mar 31 2020 00:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99814 * 2 1 4 4 H 1.48498 * 109.47174 * 90.00090 * 3 2 1 5 5 H 1.48501 * 109.47062 * 210.00041 * 3 2 1 6 6 H 1.48499 * 109.46981 * 330.00195 * 3 2 1 7 7 C 1.38805 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00366 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99878 * 0.02562 * 7 2 1 10 10 C 1.46496 * 119.99718 * 179.97438 * 9 7 2 11 11 H 1.08999 * 109.47513 * 325.00256 * 10 9 7 12 12 C 1.53001 * 109.47051 * 204.99663 * 10 9 7 13 13 N 1.46498 * 109.46979 * 55.00615 * 12 10 9 14 14 C 1.34776 * 120.00300 * 179.97438 * 13 12 10 15 15 O 1.21283 * 120.00036 * 359.97438 * 14 13 12 16 16 C 1.50707 * 120.00100 * 179.97438 * 14 13 12 17 17 C 1.52992 * 109.46849 * 179.97438 * 16 14 13 18 18 H 1.08999 * 110.34777 * 307.28480 * 17 16 14 19 19 C 1.51101 * 110.38865 * 69.69727 * 17 16 14 20 20 C 1.30531 * 111.10642 * 135.24569 * 19 17 16 21 21 C 1.51102 * 111.10264 * 0.02562 * 20 19 17 22 22 C 1.54638 * 110.38515 * 184.99985 * 17 16 14 23 23 C 1.53000 * 109.47071 * 85.00073 * 10 9 7 24 24 C 1.52996 * 117.49893 * 8.62327 * 23 10 9 25 25 C 1.53001 * 60.00201 * 252.50567 * 24 23 10 26 26 H 0.97001 * 119.99885 * 359.97438 * 1 2 3 27 27 H 0.96996 * 119.99783 * 359.97438 * 9 7 2 28 28 H 1.09005 * 109.47363 * 175.00066 * 12 10 9 29 29 H 1.08994 * 109.47370 * 295.00104 * 12 10 9 30 30 H 0.97004 * 119.99698 * 359.97438 * 13 12 10 31 31 H 1.09005 * 109.46803 * 299.99981 * 16 14 13 32 32 H 1.08999 * 109.46630 * 59.99759 * 16 14 13 33 33 H 1.07996 * 124.44769 * 315.24907 * 19 17 16 34 34 H 1.07997 * 124.44729 * 180.02562 * 20 19 17 35 35 H 1.09000 * 110.38773 * 224.75365 * 21 20 19 36 36 H 1.08994 * 110.48127 * 102.42593 * 21 20 19 37 37 H 1.09004 * 111.03406 * 334.58557 * 22 17 16 38 38 H 1.08992 * 111.03775 * 98.52307 * 22 17 16 39 39 H 1.09007 * 115.55075 * 154.32581 * 23 10 9 40 40 H 1.09004 * 117.49820 * 359.97438 * 24 23 10 41 41 H 1.09000 * 117.50376 * 145.01672 * 24 23 10 42 42 H 1.08996 * 117.50140 * 252.51055 * 25 24 23 43 43 H 1.09000 * 117.51644 * 107.47542 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 1.4001 5 1 3.5478 1.4403 -0.7001 6 1 1.4476 2.6527 -0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 1 2.9689 -3.5504 -0.5888 12 6 1.1810 -4.7521 -0.6090 13 7 0.7345 -4.3355 -1.9406 14 6 -0.0545 -5.1478 -2.6716 15 8 -0.3944 -6.2238 -2.2271 16 6 -0.5143 -4.7189 -4.0412 17 6 -1.3903 -5.8149 -4.6513 18 1 -0.8729 -6.7738 -4.6220 19 6 -2.7092 -5.9031 -3.9193 20 6 -3.7059 -6.0005 -4.7566 21 6 -3.2177 -5.9942 -6.1866 22 6 -1.7713 -5.4527 -6.1056 23 6 2.4221 -4.0355 1.4376 24 6 1.8157 -3.1967 2.5643 25 6 3.3012 -3.0610 2.2241 26 1 -0.4850 0.8401 0.0004 27 1 0.3557 -2.3880 0.0005 28 1 1.7560 -5.6746 -0.6908 29 1 0.3135 -4.9201 0.0291 30 1 1.0067 -3.4751 -2.2963 31 1 -1.0898 -3.7969 -3.9590 32 1 0.3531 -4.5502 -4.6793 33 1 -2.8136 -5.8874 -2.8446 34 1 -4.7431 -6.0757 -4.4655 35 1 -3.8359 -5.3349 -6.7959 36 1 -3.2233 -7.0043 -6.5959 37 1 -1.7479 -4.3738 -6.2591 38 1 -1.1227 -5.9618 -6.8184 39 1 2.5619 -5.1007 1.6219 40 1 1.1579 -2.3748 2.2818 41 1 1.5563 -3.7100 3.4903 42 1 4.0191 -3.4851 2.9260 43 1 3.6207 -2.1503 1.7175 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317019645.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:14 Heat of formation + Delta-G solvation = 7.631263 kcal Electronic energy + Delta-G solvation = -21678.838127 eV Core-core repulsion = 18531.957886 eV Total energy + Delta-G solvation = -3146.880242 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.75591 -38.29881 -37.46081 -34.41348 -33.24103 -31.67600 -30.66269 -28.93333 -28.16736 -25.43789 -23.58954 -22.48272 -21.50325 -20.52587 -20.05094 -19.08780 -18.57380 -17.34779 -16.65171 -15.89795 -15.75090 -15.21365 -14.98293 -14.73502 -14.43749 -13.74450 -13.68676 -13.05475 -12.92840 -12.68959 -12.06629 -11.89475 -11.81534 -11.81098 -11.28400 -11.27733 -11.19312 -11.07019 -10.89481 -10.86464 -10.71068 -10.53035 -10.13786 -9.71836 -9.57747 -9.38048 -9.15185 -8.99639 -8.84694 -8.56079 -7.08712 -5.85887 -3.16013 2.36688 3.03577 3.37135 3.43151 3.44698 3.64267 4.48156 4.60487 4.61783 4.64221 4.89646 5.13639 5.27155 5.37973 5.43059 5.46572 5.53955 5.55705 5.60613 5.66296 5.73871 5.76530 5.84435 5.88378 5.94201 5.99040 6.06250 6.09679 6.18589 6.29284 6.37680 6.47656 6.63288 6.65416 6.76373 6.93654 6.96958 7.01750 7.26986 7.63488 8.00833 8.31387 8.65372 9.43737 9.97790 10.34054 11.35569 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.017421 B = 0.004217 C = 0.003622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.894808 B = 6638.378881 C = 7728.463858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.007 4.007 3 Si 0.902 3.098 4 H -0.290 1.290 5 H -0.282 1.282 6 H -0.292 1.292 7 C -0.240 4.240 8 H 0.071 0.929 9 N -0.717 5.717 10 C 0.192 3.808 11 H 0.056 0.944 12 C 0.120 3.880 13 N -0.714 5.714 14 C 0.510 3.490 15 O -0.555 6.555 16 C -0.134 4.134 17 C -0.052 4.052 18 H 0.088 0.912 19 C -0.134 4.134 20 C -0.189 4.189 21 C -0.097 4.097 22 C -0.123 4.123 23 C -0.178 4.178 24 C -0.163 4.163 25 C -0.176 4.176 26 H 0.256 0.744 27 H 0.386 0.614 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.410 0.590 31 H 0.096 0.904 32 H 0.092 0.908 33 H 0.125 0.875 34 H 0.120 0.880 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.071 0.929 39 H 0.085 0.915 40 H 0.118 0.882 41 H 0.068 0.932 42 H 0.071 0.929 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.214 -9.976 -8.559 13.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.204 4.204 3 Si 0.733 3.267 4 H -0.217 1.217 5 H -0.208 1.208 6 H -0.219 1.219 7 C -0.371 4.371 8 H 0.089 0.911 9 N -0.359 5.359 10 C 0.081 3.919 11 H 0.074 0.926 12 C -0.005 4.005 13 N -0.366 5.366 14 C 0.296 3.704 15 O -0.434 6.434 16 C -0.174 4.174 17 C -0.071 4.071 18 H 0.106 0.894 19 C -0.152 4.152 20 C -0.207 4.207 21 C -0.134 4.134 22 C -0.161 4.161 23 C -0.199 4.199 24 C -0.200 4.200 25 C -0.213 4.213 26 H 0.065 0.935 27 H 0.221 0.779 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.246 0.754 31 H 0.114 0.886 32 H 0.110 0.890 33 H 0.143 0.857 34 H 0.138 0.862 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.090 0.910 39 H 0.103 0.897 40 H 0.136 0.864 41 H 0.087 0.913 42 H 0.090 0.910 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -1.326 -10.575 -8.266 13.488 hybrid contribution 0.299 1.396 0.192 1.441 sum -1.027 -9.179 -8.074 12.267 Atomic orbital electron populations 1.69659 1.05029 1.25741 1.57173 1.24703 0.95402 0.97531 1.02762 0.86275 0.78699 0.84130 0.77574 1.21726 1.20797 1.21866 1.19169 0.90906 0.83834 1.43208 0.91080 1.42469 1.05834 0.99472 1.88095 1.19991 0.94095 0.86114 0.91689 0.92587 1.21539 0.98636 0.97244 0.83086 1.46030 1.50816 1.21880 1.17868 1.20612 0.78137 0.84472 0.87199 1.90653 1.57040 1.22870 1.72805 1.21709 1.00987 1.00592 0.94114 1.20804 0.94554 0.98600 0.93126 0.89351 1.23332 0.93996 0.98294 0.99584 1.23208 0.98731 1.03612 0.95134 1.21312 0.95849 1.00884 0.95381 1.22578 0.96179 1.01408 0.95935 1.23076 1.05954 0.95304 0.95610 1.22901 0.96718 1.03515 0.96867 1.22837 0.93482 1.01897 1.03052 0.93450 0.77933 0.92055 0.91869 0.75417 0.88588 0.88999 0.85713 0.86213 0.91532 0.91138 0.90788 0.91009 0.89664 0.86351 0.91308 0.91037 0.87972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.07 13.06 55.49 0.72 -25.35 16 2 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 3 Si 0.90 21.16 29.55 -169.99 -5.02 16.13 16 4 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 7 C -0.24 -5.93 8.15 -15.06 -0.12 -6.05 16 8 H 0.07 1.74 6.91 -52.49 -0.36 1.38 16 9 N -0.72 -15.78 3.08 -53.43 -0.16 -15.94 16 10 C 0.19 3.50 2.86 -67.93 -0.19 3.31 16 11 H 0.06 1.04 8.08 -51.93 -0.42 0.62 16 12 C 0.12 2.02 5.22 -4.04 -0.02 2.00 16 13 N -0.71 -11.57 5.39 -60.29 -0.32 -11.90 16 14 C 0.51 8.13 7.63 -10.98 -0.08 8.05 16 15 O -0.55 -10.41 14.92 5.56 0.08 -10.33 16 16 C -0.13 -1.68 5.09 -27.88 -0.14 -1.82 16 17 C -0.05 -0.64 2.52 -90.72 -0.23 -0.87 16 18 H 0.09 1.16 7.90 -51.93 -0.41 0.75 16 19 C -0.13 -1.79 9.26 -35.70 -0.33 -2.12 16 20 C -0.19 -2.17 10.78 -35.70 -0.38 -2.56 16 21 C -0.10 -0.94 6.81 -26.82 -0.18 -1.13 16 22 C -0.12 -1.21 6.71 -25.00 -0.17 -1.37 16 23 C -0.18 -3.10 5.71 -90.62 -0.52 -3.62 16 24 C -0.16 -3.06 9.74 -26.73 -0.26 -3.32 16 25 C -0.18 -3.13 9.86 -26.73 -0.26 -3.39 16 26 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 27 H 0.39 9.39 7.80 -40.82 -0.32 9.07 16 28 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.41 6.67 8.14 -40.82 -0.33 6.34 16 31 H 0.10 1.20 8.13 -51.93 -0.42 0.78 16 32 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.12 1.87 7.58 -52.49 -0.40 1.47 16 34 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.69 7.91 -51.93 -0.41 0.28 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.09 1.34 8.11 -51.93 -0.42 0.91 16 40 H 0.12 2.66 6.68 -51.93 -0.35 2.31 16 41 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.10 2.03 6.23 -51.93 -0.32 1.70 16 LS Contribution 348.12 15.07 5.25 5.25 Total: -1.00 -27.96 348.12 -9.56 -37.52 By element: Atomic # 1 Polarization: 24.90 SS G_CDS: -7.11 Total: 17.80 kcal Atomic # 6 Polarization: -10.18 SS G_CDS: -2.99 Total: -13.17 kcal Atomic # 7 Polarization: -53.43 SS G_CDS: 0.24 Total: -53.19 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: 0.08 Total: -10.33 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -27.96 -9.56 -37.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317019645.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.148 kcal (2) G-P(sol) polarization free energy of solvation -27.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds