Wall clock time and date at job start Tue Mar 31 2020 00:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99814 * 2 1 4 4 H 1.48498 * 109.47174 * 90.00090 * 3 2 1 5 5 H 1.48501 * 109.47062 * 210.00041 * 3 2 1 6 6 H 1.48499 * 109.46981 * 330.00195 * 3 2 1 7 7 C 1.38805 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00366 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99878 * 0.02562 * 7 2 1 10 10 C 1.46496 * 119.99718 * 179.97438 * 9 7 2 11 11 H 1.08999 * 109.47513 * 325.00256 * 10 9 7 12 12 C 1.53001 * 109.47051 * 204.99663 * 10 9 7 13 13 N 1.46498 * 109.46979 * 55.00615 * 12 10 9 14 14 C 1.34776 * 120.00300 * 179.97438 * 13 12 10 15 15 O 1.21283 * 120.00036 * 359.97438 * 14 13 12 16 16 C 1.50707 * 120.00100 * 179.97438 * 14 13 12 17 17 C 1.52992 * 109.46849 * 179.97438 * 16 14 13 18 18 H 1.08999 * 110.34777 * 307.28480 * 17 16 14 19 19 C 1.51101 * 110.38865 * 69.69727 * 17 16 14 20 20 C 1.30531 * 111.10642 * 135.24569 * 19 17 16 21 21 C 1.51102 * 111.10264 * 0.02562 * 20 19 17 22 22 C 1.54638 * 110.38515 * 184.99985 * 17 16 14 23 23 C 1.53000 * 109.47071 * 85.00073 * 10 9 7 24 24 C 1.52996 * 117.49893 * 8.62327 * 23 10 9 25 25 C 1.53001 * 60.00201 * 252.50567 * 24 23 10 26 26 H 0.97001 * 119.99885 * 359.97438 * 1 2 3 27 27 H 0.96996 * 119.99783 * 359.97438 * 9 7 2 28 28 H 1.09005 * 109.47363 * 175.00066 * 12 10 9 29 29 H 1.08994 * 109.47370 * 295.00104 * 12 10 9 30 30 H 0.97004 * 119.99698 * 359.97438 * 13 12 10 31 31 H 1.09005 * 109.46803 * 299.99981 * 16 14 13 32 32 H 1.08999 * 109.46630 * 59.99759 * 16 14 13 33 33 H 1.07996 * 124.44769 * 315.24907 * 19 17 16 34 34 H 1.07997 * 124.44729 * 180.02562 * 20 19 17 35 35 H 1.09000 * 110.38773 * 224.75365 * 21 20 19 36 36 H 1.08994 * 110.48127 * 102.42593 * 21 20 19 37 37 H 1.09004 * 111.03406 * 334.58557 * 22 17 16 38 38 H 1.08992 * 111.03775 * 98.52307 * 22 17 16 39 39 H 1.09007 * 115.55075 * 154.32581 * 23 10 9 40 40 H 1.09004 * 117.49820 * 359.97438 * 24 23 10 41 41 H 1.09000 * 117.50376 * 145.01672 * 24 23 10 42 42 H 1.08996 * 117.50140 * 252.51055 * 25 24 23 43 43 H 1.09000 * 117.51644 * 107.47542 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 1.4001 5 1 3.5478 1.4403 -0.7001 6 1 1.4476 2.6527 -0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 1 2.9689 -3.5504 -0.5888 12 6 1.1810 -4.7521 -0.6090 13 7 0.7345 -4.3355 -1.9406 14 6 -0.0545 -5.1478 -2.6716 15 8 -0.3944 -6.2238 -2.2271 16 6 -0.5143 -4.7189 -4.0412 17 6 -1.3903 -5.8149 -4.6513 18 1 -0.8729 -6.7738 -4.6220 19 6 -2.7092 -5.9031 -3.9193 20 6 -3.7059 -6.0005 -4.7566 21 6 -3.2177 -5.9942 -6.1866 22 6 -1.7713 -5.4527 -6.1056 23 6 2.4221 -4.0355 1.4376 24 6 1.8157 -3.1967 2.5643 25 6 3.3012 -3.0610 2.2241 26 1 -0.4850 0.8401 0.0004 27 1 0.3557 -2.3880 0.0005 28 1 1.7560 -5.6746 -0.6908 29 1 0.3135 -4.9201 0.0291 30 1 1.0067 -3.4751 -2.2963 31 1 -1.0898 -3.7969 -3.9590 32 1 0.3531 -4.5502 -4.6793 33 1 -2.8136 -5.8874 -2.8446 34 1 -4.7431 -6.0757 -4.4655 35 1 -3.8359 -5.3349 -6.7959 36 1 -3.2233 -7.0043 -6.5959 37 1 -1.7479 -4.3738 -6.2591 38 1 -1.1227 -5.9618 -6.8184 39 1 2.5619 -5.1007 1.6219 40 1 1.1579 -2.3748 2.2818 41 1 1.5563 -3.7100 3.4903 42 1 4.0191 -3.4851 2.9260 43 1 3.6207 -2.1503 1.7175 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317019645.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:14 Heat of formation + Delta-G solvation = -7.745388 kcal Electronic energy + Delta-G solvation = -21679.504909 eV Core-core repulsion = 18531.957886 eV Total energy + Delta-G solvation = -3147.547023 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.96244 -39.48860 -38.81830 -35.84727 -35.02840 -32.92416 -32.18794 -29.88296 -29.65239 -26.57279 -25.38821 -23.89433 -22.96433 -21.52948 -21.23452 -20.53347 -19.62389 -19.16628 -17.91518 -17.14104 -16.80909 -16.69351 -16.38208 -16.16759 -15.73159 -15.32766 -15.16602 -14.57821 -14.34085 -13.96173 -13.45201 -12.98937 -12.89109 -12.80621 -12.74837 -12.65944 -12.62462 -12.57544 -12.12983 -12.05575 -11.97454 -11.94208 -11.66645 -11.58611 -11.04311 -10.97106 -10.68755 -10.58710 -9.93796 -9.76842 -8.98588 -7.87724 -5.15368 1.40668 1.49715 1.51894 1.58012 1.75976 2.38125 2.59332 3.13616 3.47272 3.68261 3.75608 3.89243 3.99581 4.02951 4.07817 4.28064 4.33773 4.37470 4.50062 4.55018 4.60968 4.61890 4.69386 4.70599 4.77913 4.94582 4.96172 4.99743 5.04025 5.12854 5.18621 5.26972 5.31542 5.42952 5.45434 5.60628 5.66997 5.67827 5.71698 6.00586 6.32292 6.69224 7.35767 7.40795 8.11499 8.37120 9.34710 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.017421 B = 0.004217 C = 0.003622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.894808 B = 6638.378881 C = 7728.463858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.065 4.065 3 Si 0.956 3.044 4 H -0.296 1.296 5 H -0.269 1.269 6 H -0.302 1.302 7 C -0.219 4.219 8 H 0.076 0.924 9 N -0.719 5.719 10 C 0.193 3.807 11 H 0.061 0.939 12 C 0.129 3.871 13 N -0.715 5.715 14 C 0.506 3.494 15 O -0.585 6.585 16 C -0.127 4.127 17 C -0.050 4.050 18 H 0.075 0.925 19 C -0.170 4.170 20 C -0.175 4.175 21 C -0.098 4.098 22 C -0.117 4.117 23 C -0.169 4.169 24 C -0.174 4.174 25 C -0.169 4.169 26 H 0.247 0.753 27 H 0.373 0.627 28 H 0.076 0.924 29 H 0.046 0.954 30 H 0.410 0.590 31 H 0.097 0.903 32 H 0.118 0.882 33 H 0.096 0.904 34 H 0.129 0.871 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.090 0.910 39 H 0.114 0.886 40 H 0.077 0.923 41 H 0.089 0.911 42 H 0.101 0.899 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.029 -10.839 -9.882 14.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.258 4.258 3 Si 0.788 3.212 4 H -0.224 1.224 5 H -0.194 1.194 6 H -0.229 1.229 7 C -0.351 4.351 8 H 0.094 0.906 9 N -0.359 5.359 10 C 0.084 3.916 11 H 0.079 0.921 12 C 0.004 3.996 13 N -0.366 5.366 14 C 0.294 3.706 15 O -0.466 6.466 16 C -0.167 4.167 17 C -0.069 4.069 18 H 0.093 0.907 19 C -0.188 4.188 20 C -0.193 4.193 21 C -0.134 4.134 22 C -0.154 4.154 23 C -0.191 4.191 24 C -0.212 4.212 25 C -0.206 4.206 26 H 0.056 0.944 27 H 0.206 0.794 28 H 0.094 0.906 29 H 0.064 0.936 30 H 0.246 0.754 31 H 0.115 0.885 32 H 0.136 0.864 33 H 0.114 0.886 34 H 0.147 0.853 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.099 0.901 38 H 0.109 0.891 39 H 0.132 0.868 40 H 0.095 0.905 41 H 0.108 0.892 42 H 0.120 0.880 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.093 -11.461 -9.597 14.949 hybrid contribution -0.078 1.563 0.642 1.692 sum -0.170 -9.898 -8.955 13.349 Atomic orbital electron populations 1.69801 1.06339 1.25541 1.59903 1.25296 0.95957 1.00192 1.04335 0.85388 0.77983 0.80936 0.76934 1.22418 1.19434 1.22918 1.19429 0.91116 0.84571 1.39935 0.90569 1.42517 1.05236 1.00259 1.87925 1.20118 0.93968 0.84863 0.92643 0.92128 1.21395 0.97784 0.97215 0.83210 1.46052 1.50981 1.21924 1.17622 1.21241 0.77273 0.83840 0.88227 1.90636 1.58001 1.24273 1.73721 1.21747 1.02024 1.00638 0.92274 1.20793 0.93640 0.97792 0.94678 0.90666 1.23277 0.95616 1.01311 0.98593 1.23531 0.98823 1.00786 0.96179 1.21386 0.95960 1.02047 0.94055 1.22593 0.96465 1.02111 0.94258 1.23073 1.05060 0.96694 0.94234 1.22759 0.96888 1.03090 0.98430 1.22832 0.93287 1.01172 1.03284 0.94419 0.79422 0.90558 0.93608 0.75363 0.88479 0.86366 0.88578 0.85321 0.89886 0.89883 0.90089 0.89125 0.86846 0.90469 0.89218 0.88042 0.90236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -55.59 13.06 21.65 0.28 -55.31 16 2 C -0.07 -3.46 5.50 84.86 0.47 -3.00 16 3 Si 0.96 43.89 29.55 68.60 2.03 45.92 16 4 H -0.30 -13.76 7.11 99.48 0.71 -13.06 16 5 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 6 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 7 C -0.22 -10.78 8.15 84.03 0.68 -10.09 16 8 H 0.08 3.65 6.91 -2.91 -0.02 3.63 16 9 N -0.72 -31.82 3.08 -322.95 -0.99 -32.81 16 10 C 0.19 6.86 2.86 44.99 0.13 6.99 16 11 H 0.06 2.14 8.08 -2.39 -0.02 2.12 16 12 C 0.13 4.27 5.22 86.38 0.45 4.72 16 13 N -0.71 -22.94 5.39 -463.06 -2.49 -25.43 16 14 C 0.51 16.12 7.63 87.66 0.67 16.79 16 15 O -0.59 -22.30 14.92 -3.04 -0.05 -22.35 16 16 C -0.13 -3.07 5.09 29.85 0.15 -2.92 16 17 C -0.05 -1.19 2.52 -10.86 -0.03 -1.21 16 18 H 0.08 1.95 7.90 -2.39 -0.02 1.93 16 19 C -0.17 -4.57 9.26 26.26 0.24 -4.33 16 20 C -0.18 -3.85 10.78 26.26 0.28 -3.57 16 21 C -0.10 -1.64 6.81 30.54 0.21 -1.43 16 22 C -0.12 -1.98 6.71 31.72 0.21 -1.77 16 23 C -0.17 -5.58 5.71 -10.79 -0.06 -5.64 16 24 C -0.17 -6.39 9.74 30.59 0.30 -6.09 16 25 C -0.17 -5.67 9.86 30.60 0.30 -5.37 16 26 H 0.25 14.12 8.31 -92.71 -0.77 13.35 16 27 H 0.37 18.59 7.80 -92.71 -0.72 17.87 16 28 H 0.08 2.33 8.14 -2.38 -0.02 2.31 16 29 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.41 13.17 8.14 -92.70 -0.75 12.42 16 31 H 0.10 2.36 8.13 -2.38 -0.02 2.34 16 32 H 0.12 2.21 8.14 -2.39 -0.02 2.19 16 33 H 0.10 3.09 7.58 -2.91 -0.02 3.06 16 34 H 0.13 2.50 8.06 -2.91 -0.02 2.48 16 35 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.08 1.28 7.91 -2.38 -0.02 1.26 16 38 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.11 3.17 8.11 -2.38 -0.02 3.15 16 40 H 0.08 3.53 6.68 -2.39 -0.02 3.52 16 41 H 0.09 2.88 8.14 -2.39 -0.02 2.86 16 42 H 0.10 2.82 8.14 -2.39 -0.02 2.80 16 43 H 0.08 3.05 6.23 -2.39 -0.01 3.04 16 Total: -1.00 -61.19 348.12 2.31 -58.88 By element: Atomic # 1 Polarization: 48.51 SS G_CDS: -0.48 Total: 48.03 kcal Atomic # 6 Polarization: -20.94 SS G_CDS: 4.01 Total: -16.93 kcal Atomic # 7 Polarization: -110.34 SS G_CDS: -3.21 Total: -113.55 kcal Atomic # 8 Polarization: -22.30 SS G_CDS: -0.05 Total: -22.35 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -61.19 2.31 -58.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317019645.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.133 kcal (2) G-P(sol) polarization free energy of solvation -61.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds