Wall clock time and date at job start Tue Mar 31 2020 00:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86792 * 120.00359 * 2 1 4 4 H 1.48497 * 109.47380 * 270.00358 * 3 2 1 5 5 H 1.48505 * 109.47063 * 30.00097 * 3 2 1 6 6 H 1.48500 * 109.47400 * 149.99944 * 3 2 1 7 7 C 1.38815 * 119.99610 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00192 * 179.97438 * 7 2 1 9 9 N 1.36941 * 120.00015 * 359.97438 * 7 2 1 10 10 C 1.46500 * 119.99973 * 179.97438 * 9 7 2 11 11 H 1.08999 * 109.47037 * 34.99911 * 10 9 7 12 12 C 1.52998 * 109.47307 * 154.99920 * 10 9 7 13 13 N 1.46502 * 109.46934 * 305.00324 * 12 10 9 14 14 C 1.34778 * 119.99631 * 180.02562 * 13 12 10 15 15 O 1.21284 * 119.99974 * 359.97438 * 14 13 12 16 16 C 1.50696 * 119.99739 * 179.97438 * 14 13 12 17 17 C 1.53007 * 109.47169 * 179.97438 * 16 14 13 18 18 H 1.08997 * 110.33971 * 52.71211 * 17 16 14 19 19 C 1.51098 * 110.38790 * 290.30488 * 17 16 14 20 20 C 1.30798 * 111.15292 * 224.77792 * 19 17 16 21 21 C 1.51106 * 110.94366 * 359.95455 * 20 19 17 22 22 C 1.54630 * 110.38584 * 174.99948 * 17 16 14 23 23 C 1.53003 * 109.46925 * 275.00112 * 10 9 7 24 24 C 1.53002 * 117.49639 * 128.62113 * 23 10 9 25 25 C 1.52993 * 59.99939 * 252.50979 * 24 23 10 26 26 H 0.97004 * 119.99735 * 359.97438 * 1 2 3 27 27 H 0.96998 * 119.99770 * 0.02562 * 9 7 2 28 28 H 1.08996 * 109.47096 * 185.00045 * 12 10 9 29 29 H 1.08998 * 109.46644 * 65.00055 * 12 10 9 30 30 H 0.96995 * 120.00244 * 359.97438 * 13 12 10 31 31 H 1.09004 * 109.47010 * 59.99623 * 16 14 13 32 32 H 1.08998 * 109.47365 * 299.99925 * 16 14 13 33 33 H 1.08002 * 124.45027 * 44.73435 * 19 17 16 34 34 H 1.08002 * 124.60922 * 179.97438 * 20 19 17 35 35 H 1.09002 * 110.38747 * 257.61980 * 21 20 19 36 36 H 1.09000 * 110.38500 * 135.35448 * 21 20 19 37 37 H 1.09004 * 111.04043 * 25.42005 * 22 17 16 38 38 H 1.09001 * 111.07445 * 261.49288 * 22 17 16 39 39 H 1.08994 * 115.54802 * 274.32384 * 23 10 9 40 40 H 1.09004 * 117.50401 * 0.02562 * 24 23 10 41 41 H 1.08999 * 117.49885 * 145.01834 * 24 23 10 42 42 H 1.09002 * 117.49754 * 252.51252 * 25 24 23 43 43 H 1.08998 * 117.50081 * 107.49691 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0901 -1.2023 -0.0010 9 7 1.3254 -2.3881 -0.0005 10 6 2.0578 -3.6569 -0.0017 11 1 2.9690 -3.5509 0.5871 12 6 1.1811 -4.7525 0.6081 13 7 0.7355 -4.3363 1.9403 14 6 -0.0529 -5.1489 2.6714 15 8 -0.3939 -6.2244 2.2263 16 6 -0.5108 -4.7211 4.0419 17 6 -1.3877 -5.8167 4.6517 18 1 -0.8716 -6.7762 4.6207 19 6 -2.7075 -5.9023 3.9210 20 6 -3.7062 -5.9991 4.7600 21 6 -3.2138 -5.9948 6.1886 22 6 -1.7668 -5.4556 6.1067 23 6 2.4206 -4.0350 -1.4392 24 6 3.8812 -4.3857 -1.7302 25 6 3.2992 -3.0603 -2.2257 26 1 -0.4850 0.8401 0.0004 27 1 0.3554 -2.3880 -0.0005 28 1 1.7560 -5.6749 0.6890 29 1 0.3131 -4.9200 -0.0295 30 1 1.0085 -3.4764 2.2963 31 1 -1.0859 -3.7986 3.9613 32 1 0.3574 -4.5534 4.6792 33 1 -2.8130 -5.8851 2.8463 34 1 -4.7445 -6.0726 4.4719 35 1 -3.2198 -7.0061 6.5953 36 1 -3.8302 -5.3364 6.8007 37 1 -1.7418 -4.3769 6.2615 38 1 -1.1182 -5.9660 6.8189 39 1 1.6529 -4.5779 -1.9904 40 1 4.5836 -4.3474 -0.8976 41 1 4.0746 -5.1595 -2.4731 42 1 3.1098 -2.9622 -3.2947 43 1 3.6189 -2.1496 -1.7193 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317019646.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:17 Heat of formation + Delta-G solvation = 4.229937 kcal Electronic energy + Delta-G solvation = -21553.034905 eV Core-core repulsion = 18406.007171 eV Total energy + Delta-G solvation = -3147.027734 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.75069 -38.27043 -37.40626 -34.60110 -33.36118 -31.67587 -30.74271 -28.91463 -28.07649 -25.42667 -23.56252 -22.26591 -21.70086 -20.52627 -20.13558 -19.48322 -18.61526 -17.38429 -16.61726 -15.86841 -15.75112 -15.20904 -15.00875 -14.72481 -14.36561 -13.91407 -13.60222 -13.19156 -12.89306 -12.77018 -12.09084 -11.88822 -11.81259 -11.80549 -11.39186 -11.26810 -11.19281 -11.06635 -10.88688 -10.87967 -10.73041 -10.70415 -10.14651 -9.95117 -9.66232 -9.40380 -9.28035 -8.99968 -8.83315 -8.56700 -7.06971 -5.84063 -3.13566 2.35731 3.03306 3.37645 3.43343 3.45127 3.63708 4.39953 4.57643 4.61314 4.62700 4.89490 5.13330 5.22838 5.27458 5.42374 5.47215 5.50611 5.55235 5.57055 5.59456 5.66417 5.75298 5.77121 5.87524 5.90629 5.94363 6.02584 6.06904 6.16800 6.18528 6.29211 6.41513 6.53743 6.60146 6.63564 6.76781 6.94342 6.96544 6.98532 7.62653 8.00447 8.32913 8.64997 9.45126 9.99565 10.35758 11.37780 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.016032 B = 0.004254 C = 0.003557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.121417 B = 6579.990909 C = 7870.944685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.009 4.009 3 Si 0.903 3.097 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.238 4.238 8 H 0.071 0.929 9 N -0.717 5.717 10 C 0.193 3.807 11 H 0.054 0.946 12 C 0.119 3.881 13 N -0.715 5.715 14 C 0.510 3.490 15 O -0.555 6.555 16 C -0.134 4.134 17 C -0.052 4.052 18 H 0.089 0.911 19 C -0.134 4.134 20 C -0.189 4.189 21 C -0.097 4.097 22 C -0.123 4.123 23 C -0.159 4.159 24 C -0.196 4.196 25 C -0.156 4.156 26 H 0.255 0.745 27 H 0.385 0.615 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.410 0.590 31 H 0.096 0.904 32 H 0.092 0.908 33 H 0.125 0.875 34 H 0.121 0.879 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.073 0.927 38 H 0.071 0.929 39 H 0.090 0.910 40 H 0.086 0.914 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.589 -10.379 8.714 13.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.205 4.205 3 Si 0.734 3.266 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.369 4.369 8 H 0.088 0.912 9 N -0.357 5.357 10 C 0.082 3.918 11 H 0.072 0.928 12 C -0.005 4.005 13 N -0.366 5.366 14 C 0.296 3.704 15 O -0.434 6.434 16 C -0.174 4.174 17 C -0.071 4.071 18 H 0.107 0.893 19 C -0.152 4.152 20 C -0.207 4.207 21 C -0.134 4.134 22 C -0.161 4.161 23 C -0.181 4.181 24 C -0.234 4.234 25 C -0.193 4.193 26 H 0.065 0.935 27 H 0.219 0.781 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.246 0.754 31 H 0.114 0.886 32 H 0.110 0.890 33 H 0.143 0.857 34 H 0.138 0.862 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.092 0.908 38 H 0.090 0.910 39 H 0.108 0.892 40 H 0.104 0.896 41 H 0.099 0.901 42 H 0.098 0.902 43 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -0.711 -10.971 8.426 13.851 hybrid contribution 0.223 1.445 -0.248 1.483 sum -0.488 -9.526 8.178 12.564 Atomic orbital electron populations 1.69661 1.05066 1.25698 1.57244 1.24714 0.95423 0.97555 1.02834 0.86266 0.78680 0.84105 0.77568 1.21743 1.21835 1.20781 1.19163 0.90823 0.83872 1.43044 0.91151 1.42452 1.05820 0.99402 1.88070 1.20054 0.94344 0.86169 0.91189 0.92776 1.21555 0.98460 0.97372 0.83147 1.46022 1.50855 1.21920 1.17811 1.20611 0.78127 0.84450 0.87217 1.90654 1.56982 1.22896 1.72819 1.21710 1.01000 1.00613 0.94090 1.20797 0.94526 0.98611 0.93128 0.89336 1.23403 0.93966 0.98297 0.99562 1.23285 0.98697 1.03618 0.95122 1.21310 0.95831 1.00885 0.95411 1.22573 0.96170 1.01424 0.95923 1.23036 0.92154 1.03051 0.99863 1.22947 0.97264 0.99844 1.03347 1.22767 1.03415 0.94047 0.99098 0.93473 0.78053 0.91843 0.91987 0.75401 0.88575 0.88976 0.85721 0.86159 0.91158 0.91534 0.90791 0.91000 0.89177 0.89561 0.90106 0.90236 0.87730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.56 13.06 55.49 0.72 -25.84 16 2 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 3 Si 0.90 21.31 29.55 -169.99 -5.02 16.29 16 4 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.24 -6.00 8.63 -15.06 -0.13 -6.13 16 8 H 0.07 1.74 6.91 -52.49 -0.36 1.37 16 9 N -0.72 -16.21 4.54 -53.42 -0.24 -16.45 16 10 C 0.19 3.55 2.70 -67.93 -0.18 3.37 16 11 H 0.05 1.01 7.84 -51.93 -0.41 0.60 16 12 C 0.12 2.03 5.22 -4.04 -0.02 2.01 16 13 N -0.71 -11.64 5.39 -60.30 -0.32 -11.97 16 14 C 0.51 8.15 7.63 -10.99 -0.08 8.06 16 15 O -0.55 -10.41 14.92 5.55 0.08 -10.33 16 16 C -0.13 -1.68 5.09 -27.88 -0.14 -1.82 16 17 C -0.05 -0.63 2.52 -90.72 -0.23 -0.86 16 18 H 0.09 1.16 7.90 -51.93 -0.41 0.75 16 19 C -0.13 -1.79 9.27 -35.78 -0.33 -2.12 16 20 C -0.19 -2.18 10.80 -35.77 -0.39 -2.56 16 21 C -0.10 -0.95 6.80 -26.82 -0.18 -1.13 16 22 C -0.12 -1.21 6.71 -25.01 -0.17 -1.37 16 23 C -0.16 -2.77 5.36 -90.62 -0.49 -3.26 16 24 C -0.20 -2.97 10.18 -26.73 -0.27 -3.24 16 25 C -0.16 -2.76 9.78 -26.74 -0.26 -3.02 16 26 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 27 H 0.39 9.59 7.80 -40.82 -0.32 9.27 16 28 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 29 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.41 6.72 8.14 -40.82 -0.33 6.39 16 31 H 0.10 1.20 8.13 -51.93 -0.42 0.78 16 32 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.12 1.87 7.59 -52.49 -0.40 1.47 16 34 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.69 7.91 -51.93 -0.41 0.28 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.09 1.54 8.11 -51.93 -0.42 1.12 16 40 H 0.09 1.26 8.05 -51.93 -0.42 0.84 16 41 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 42 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 43 H 0.10 2.06 6.23 -51.93 -0.32 1.74 16 LS Contribution 351.05 15.07 5.29 5.29 Total: -1.00 -28.79 351.05 -9.63 -38.42 By element: Atomic # 1 Polarization: 24.16 SS G_CDS: -7.16 Total: 16.99 kcal Atomic # 6 Polarization: -9.44 SS G_CDS: -2.97 Total: -12.41 kcal Atomic # 7 Polarization: -54.41 SS G_CDS: 0.16 Total: -54.25 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: 0.08 Total: -10.33 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -28.79 -9.63 -38.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317019646.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.649 kcal (2) G-P(sol) polarization free energy of solvation -28.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.419 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds