Wall clock time and date at job start Tue Mar 31 2020 00:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86792 * 120.00359 * 2 1 4 4 H 1.48497 * 109.47380 * 270.00358 * 3 2 1 5 5 H 1.48505 * 109.47063 * 30.00097 * 3 2 1 6 6 H 1.48500 * 109.47400 * 149.99944 * 3 2 1 7 7 C 1.38815 * 119.99610 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00192 * 179.97438 * 7 2 1 9 9 N 1.36941 * 120.00015 * 359.97438 * 7 2 1 10 10 C 1.46500 * 119.99973 * 179.97438 * 9 7 2 11 11 H 1.08999 * 109.47037 * 34.99911 * 10 9 7 12 12 C 1.52998 * 109.47307 * 154.99920 * 10 9 7 13 13 N 1.46502 * 109.46934 * 305.00324 * 12 10 9 14 14 C 1.34778 * 119.99631 * 180.02562 * 13 12 10 15 15 O 1.21284 * 119.99974 * 359.97438 * 14 13 12 16 16 C 1.50696 * 119.99739 * 179.97438 * 14 13 12 17 17 C 1.53007 * 109.47169 * 179.97438 * 16 14 13 18 18 H 1.08997 * 110.33971 * 52.71211 * 17 16 14 19 19 C 1.51098 * 110.38790 * 290.30488 * 17 16 14 20 20 C 1.30798 * 111.15292 * 224.77792 * 19 17 16 21 21 C 1.51106 * 110.94366 * 359.95455 * 20 19 17 22 22 C 1.54630 * 110.38584 * 174.99948 * 17 16 14 23 23 C 1.53003 * 109.46925 * 275.00112 * 10 9 7 24 24 C 1.53002 * 117.49639 * 128.62113 * 23 10 9 25 25 C 1.52993 * 59.99939 * 252.50979 * 24 23 10 26 26 H 0.97004 * 119.99735 * 359.97438 * 1 2 3 27 27 H 0.96998 * 119.99770 * 0.02562 * 9 7 2 28 28 H 1.08996 * 109.47096 * 185.00045 * 12 10 9 29 29 H 1.08998 * 109.46644 * 65.00055 * 12 10 9 30 30 H 0.96995 * 120.00244 * 359.97438 * 13 12 10 31 31 H 1.09004 * 109.47010 * 59.99623 * 16 14 13 32 32 H 1.08998 * 109.47365 * 299.99925 * 16 14 13 33 33 H 1.08002 * 124.45027 * 44.73435 * 19 17 16 34 34 H 1.08002 * 124.60922 * 179.97438 * 20 19 17 35 35 H 1.09002 * 110.38747 * 257.61980 * 21 20 19 36 36 H 1.09000 * 110.38500 * 135.35448 * 21 20 19 37 37 H 1.09004 * 111.04043 * 25.42005 * 22 17 16 38 38 H 1.09001 * 111.07445 * 261.49288 * 22 17 16 39 39 H 1.08994 * 115.54802 * 274.32384 * 23 10 9 40 40 H 1.09004 * 117.50401 * 0.02562 * 24 23 10 41 41 H 1.08999 * 117.49885 * 145.01834 * 24 23 10 42 42 H 1.09002 * 117.49754 * 252.51252 * 25 24 23 43 43 H 1.08998 * 117.50081 * 107.49691 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0901 -1.2023 -0.0010 9 7 1.3254 -2.3881 -0.0005 10 6 2.0578 -3.6569 -0.0017 11 1 2.9690 -3.5509 0.5871 12 6 1.1811 -4.7525 0.6081 13 7 0.7355 -4.3363 1.9403 14 6 -0.0529 -5.1489 2.6714 15 8 -0.3939 -6.2244 2.2263 16 6 -0.5108 -4.7211 4.0419 17 6 -1.3877 -5.8167 4.6517 18 1 -0.8716 -6.7762 4.6207 19 6 -2.7075 -5.9023 3.9210 20 6 -3.7062 -5.9991 4.7600 21 6 -3.2138 -5.9948 6.1886 22 6 -1.7668 -5.4556 6.1067 23 6 2.4206 -4.0350 -1.4392 24 6 3.8812 -4.3857 -1.7302 25 6 3.2992 -3.0603 -2.2257 26 1 -0.4850 0.8401 0.0004 27 1 0.3554 -2.3880 -0.0005 28 1 1.7560 -5.6749 0.6890 29 1 0.3131 -4.9200 -0.0295 30 1 1.0085 -3.4764 2.2963 31 1 -1.0859 -3.7986 3.9613 32 1 0.3574 -4.5534 4.6792 33 1 -2.8130 -5.8851 2.8463 34 1 -4.7445 -6.0726 4.4719 35 1 -3.2198 -7.0061 6.5953 36 1 -3.8302 -5.3364 6.8007 37 1 -1.7418 -4.3769 6.2615 38 1 -1.1182 -5.9660 6.8189 39 1 1.6529 -4.5779 -1.9904 40 1 4.5836 -4.3474 -0.8976 41 1 4.0746 -5.1595 -2.4731 42 1 3.1098 -2.9622 -3.2947 43 1 3.6189 -2.1496 -1.7193 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317019646.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:17 Heat of formation + Delta-G solvation = -12.229016 kcal Electronic energy + Delta-G solvation = -21553.748619 eV Core-core repulsion = 18406.007171 eV Total energy + Delta-G solvation = -3147.741448 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.96103 -39.41654 -38.74602 -36.05403 -35.10286 -32.97329 -32.24745 -29.83634 -29.59221 -26.57836 -25.33444 -23.67238 -23.02156 -21.61141 -21.29592 -20.86911 -19.65358 -19.18481 -17.87955 -17.12119 -16.87191 -16.71787 -16.33999 -16.00824 -15.70667 -15.40955 -15.07035 -14.84211 -14.27122 -14.01876 -13.41366 -12.99309 -12.97177 -12.81736 -12.74502 -12.66110 -12.65151 -12.41687 -12.25137 -12.05585 -11.98977 -11.96129 -11.72308 -11.67266 -11.03537 -10.99398 -10.80307 -10.64500 -9.95162 -9.75622 -8.99198 -7.88011 -5.15653 1.39586 1.50042 1.51699 1.58452 1.75153 2.36842 2.58926 3.07919 3.48822 3.68196 3.75837 3.80809 4.00163 4.02648 4.05897 4.18424 4.34885 4.38269 4.39978 4.52290 4.61243 4.62556 4.68631 4.69729 4.77598 4.87894 4.89815 4.99667 5.03313 5.12939 5.15676 5.18537 5.31442 5.40047 5.45103 5.47496 5.58780 5.62376 5.71100 6.00091 6.31606 6.68232 7.34799 7.39939 8.10904 8.36625 9.34882 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.016032 B = 0.004254 C = 0.003557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.121417 B = 6579.990909 C = 7870.944685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.069 4.069 3 Si 0.960 3.040 4 H -0.295 1.295 5 H -0.301 1.301 6 H -0.268 1.268 7 C -0.219 4.219 8 H 0.077 0.923 9 N -0.723 5.723 10 C 0.198 3.802 11 H 0.058 0.942 12 C 0.129 3.871 13 N -0.715 5.715 14 C 0.506 3.494 15 O -0.585 6.585 16 C -0.127 4.127 17 C -0.050 4.050 18 H 0.075 0.925 19 C -0.170 4.170 20 C -0.175 4.175 21 C -0.098 4.098 22 C -0.117 4.117 23 C -0.175 4.175 24 C -0.161 4.161 25 C -0.174 4.174 26 H 0.247 0.753 27 H 0.372 0.628 28 H 0.076 0.924 29 H 0.045 0.955 30 H 0.410 0.590 31 H 0.097 0.903 32 H 0.119 0.881 33 H 0.096 0.904 34 H 0.130 0.870 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.097 0.903 41 H 0.106 0.894 42 H 0.085 0.915 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.662 -11.085 10.137 15.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.261 4.261 3 Si 0.790 3.210 4 H -0.223 1.223 5 H -0.228 1.228 6 H -0.193 1.193 7 C -0.351 4.351 8 H 0.095 0.905 9 N -0.362 5.362 10 C 0.089 3.911 11 H 0.076 0.924 12 C 0.004 3.996 13 N -0.366 5.366 14 C 0.294 3.706 15 O -0.466 6.466 16 C -0.167 4.167 17 C -0.069 4.069 18 H 0.093 0.907 19 C -0.189 4.189 20 C -0.193 4.193 21 C -0.135 4.135 22 C -0.154 4.154 23 C -0.196 4.196 24 C -0.199 4.199 25 C -0.211 4.211 26 H 0.056 0.944 27 H 0.204 0.796 28 H 0.094 0.906 29 H 0.063 0.937 30 H 0.246 0.754 31 H 0.115 0.885 32 H 0.137 0.863 33 H 0.114 0.886 34 H 0.148 0.852 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.099 0.901 38 H 0.109 0.891 39 H 0.109 0.891 40 H 0.115 0.885 41 H 0.124 0.876 42 H 0.103 0.897 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.592 -11.707 9.854 15.314 hybrid contribution -0.164 1.549 -0.727 1.719 sum 0.427 -10.158 9.127 13.663 Atomic orbital electron populations 1.69810 1.06449 1.25600 1.59982 1.25354 0.96031 1.00389 1.04357 0.85339 0.77960 0.80661 0.76999 1.22325 1.22824 1.19307 1.19466 0.91147 0.84600 1.39862 0.90480 1.42559 1.05263 1.00375 1.88034 1.20138 0.94080 0.84738 0.92129 0.92398 1.21407 0.97639 0.97305 0.83287 1.46050 1.51033 1.21963 1.17559 1.21252 0.77251 0.83815 0.88259 1.90637 1.57937 1.24300 1.73738 1.21751 1.02053 1.00671 0.92213 1.20787 0.93607 0.97794 0.94693 0.90654 1.23348 0.95592 1.01343 0.98571 1.23610 0.98797 1.00762 0.96160 1.21386 0.95939 1.02049 0.94088 1.22588 0.96458 1.02136 0.94230 1.22936 0.93971 1.03941 0.98798 1.23019 0.95071 0.98307 1.03485 1.22722 1.04776 0.94331 0.99258 0.94389 0.79597 0.90565 0.93663 0.75360 0.88454 0.86321 0.88599 0.85249 0.89904 0.89876 0.90084 0.89104 0.89083 0.88502 0.87592 0.89669 0.90010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -56.49 13.06 21.65 0.28 -56.20 16 2 C -0.07 -3.71 5.50 84.86 0.47 -3.24 16 3 Si 0.96 44.09 29.55 68.60 2.03 46.12 16 4 H -0.30 -13.69 7.11 99.48 0.71 -12.99 16 5 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 6 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 7 C -0.22 -10.98 8.63 84.03 0.72 -10.25 16 8 H 0.08 3.73 6.91 -2.91 -0.02 3.71 16 9 N -0.72 -32.84 4.54 -322.94 -1.47 -34.30 16 10 C 0.20 7.14 2.70 44.99 0.12 7.27 16 11 H 0.06 2.07 7.84 -2.39 -0.02 2.05 16 12 C 0.13 4.34 5.22 86.38 0.45 4.79 16 13 N -0.71 -23.23 5.39 -463.06 -2.49 -25.73 16 14 C 0.51 16.24 7.63 87.66 0.67 16.91 16 15 O -0.59 -22.42 14.92 -3.04 -0.05 -22.47 16 16 C -0.13 -3.09 5.09 29.85 0.15 -2.93 16 17 C -0.05 -1.18 2.52 -10.86 -0.03 -1.21 16 18 H 0.08 1.95 7.90 -2.39 -0.02 1.93 16 19 C -0.17 -4.60 9.27 25.98 0.24 -4.36 16 20 C -0.18 -3.86 10.80 25.98 0.28 -3.58 16 21 C -0.10 -1.65 6.80 30.53 0.21 -1.44 16 22 C -0.12 -1.98 6.71 31.71 0.21 -1.77 16 23 C -0.18 -5.87 5.36 -10.79 -0.06 -5.93 16 24 C -0.16 -4.42 10.18 30.59 0.31 -4.10 16 25 C -0.17 -5.91 9.78 30.59 0.30 -5.61 16 26 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 27 H 0.37 18.91 7.80 -92.71 -0.72 18.19 16 28 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 29 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.41 13.34 8.14 -92.71 -0.75 12.58 16 31 H 0.10 2.37 8.13 -2.38 -0.02 2.35 16 32 H 0.12 2.23 8.14 -2.39 -0.02 2.21 16 33 H 0.10 3.09 7.59 -2.91 -0.02 3.07 16 34 H 0.13 2.51 8.06 -2.91 -0.02 2.49 16 35 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.08 1.28 7.91 -2.39 -0.02 1.26 16 38 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.09 3.04 8.11 -2.39 -0.02 3.02 16 40 H 0.10 2.48 8.05 -2.39 -0.02 2.46 16 41 H 0.11 2.43 8.14 -2.39 -0.02 2.41 16 42 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 43 H 0.08 3.16 6.23 -2.39 -0.01 3.15 16 Total: -1.00 -62.51 351.05 1.88 -60.63 By element: Atomic # 1 Polarization: 47.89 SS G_CDS: -0.48 Total: 47.42 kcal Atomic # 6 Polarization: -19.52 SS G_CDS: 4.05 Total: -15.47 kcal Atomic # 7 Polarization: -112.55 SS G_CDS: -3.68 Total: -116.23 kcal Atomic # 8 Polarization: -22.42 SS G_CDS: -0.05 Total: -22.47 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -62.51 1.88 -60.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317019646.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.401 kcal (2) G-P(sol) polarization free energy of solvation -62.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds