Wall clock time and date at job start Mon Mar 30 2020 23:56:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86799 * 120.00182 * 2 1 4 4 H 1.48503 * 109.46810 * 270.00263 * 3 2 1 5 5 H 1.48498 * 109.47328 * 29.99796 * 3 2 1 6 6 H 1.48497 * 109.47248 * 150.00169 * 3 2 1 7 7 C 1.38811 * 119.99886 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99822 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00343 * 0.02562 * 7 2 1 10 10 C 1.47026 * 125.64755 * 359.97041 * 9 7 2 11 11 C 1.54319 * 107.27228 * 178.97936 * 10 9 7 12 12 C 1.55160 * 102.94278 * 337.80887 * 11 10 9 13 13 H 1.08998 * 110.99895 * 277.38754 * 12 11 10 14 14 C 1.52999 * 111.00168 * 153.57979 * 12 11 10 15 15 C 1.53006 * 109.46626 * 178.17940 * 14 12 11 16 16 N 1.46500 * 109.46998 * 179.97438 * 15 14 12 17 17 C 1.34769 * 120.00241 * 180.02562 * 16 15 14 18 18 O 1.21616 * 119.99624 * 359.97438 * 17 16 15 19 19 C 1.47098 * 120.00366 * 180.02562 * 17 16 15 20 20 C 1.32617 * 124.62565 * 179.69594 * 19 17 16 21 21 C 1.51111 * 110.76124 * 179.84153 * 20 19 17 22 22 C 1.54578 * 104.90085 * 343.80557 * 21 20 19 23 23 C 1.51113 * 124.61875 * 359.97438 * 19 17 16 24 24 C 1.47468 * 125.63207 * 179.97438 * 9 7 2 25 25 H 0.96999 * 119.99817 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.88030 * 59.55688 * 10 9 7 27 27 H 1.09004 * 110.00852 * 298.47088 * 10 9 7 28 28 H 1.09003 * 110.71912 * 219.44250 * 11 10 9 29 29 H 1.09000 * 110.87316 * 96.24399 * 11 10 9 30 30 H 1.08993 * 109.47839 * 58.18009 * 14 12 11 31 31 H 1.09000 * 109.47160 * 298.17571 * 14 12 11 32 32 H 1.09000 * 109.47050 * 299.99699 * 15 14 12 33 33 H 1.09001 * 109.46801 * 59.99811 * 15 14 12 34 34 H 0.97010 * 119.99910 * 359.97438 * 16 15 14 35 35 H 1.08002 * 124.61541 * 0.02562 * 20 19 17 36 36 H 1.09000 * 110.51753 * 224.85250 * 21 20 19 37 37 H 1.09000 * 110.24222 * 102.62287 * 21 20 19 38 38 H 1.08994 * 110.98116 * 266.70857 * 22 21 20 39 39 H 1.09002 * 111.01310 * 142.92317 * 22 21 20 40 40 H 1.09001 * 110.36599 * 315.44298 * 23 19 17 41 41 H 1.09004 * 110.36513 * 77.65279 * 23 19 17 42 42 H 1.09000 * 110.34671 * 85.25009 * 24 9 7 43 43 H 1.08991 * 110.40643 * 322.91703 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.1375 -2.5328 0.0006 11 6 -0.4484 -4.0441 -0.0257 12 6 0.8520 -4.6563 -0.6101 13 1 0.8566 -4.5975 -1.6985 14 6 1.0369 -6.1009 -0.1412 15 6 2.3027 -6.6840 -0.7729 16 7 2.4802 -8.0670 -0.3234 17 6 3.5362 -8.7852 -0.7539 18 8 4.3415 -8.2853 -1.5159 19 6 3.7141 -10.1740 -0.3031 20 6 4.7133 -10.9640 -0.6723 21 6 4.5916 -12.3219 -0.0206 22 6 3.5858 -12.1191 1.1356 23 6 2.7799 -10.8971 0.6392 24 6 1.9341 -3.7314 0.0005 25 1 -0.4850 0.8400 0.0004 26 1 -0.5575 -2.0524 -0.8830 27 1 -0.5567 -2.0837 0.9010 28 1 -1.2985 -4.2517 -0.6756 29 1 -0.6333 -4.4201 0.9806 30 1 0.1739 -6.6943 -0.4429 31 1 1.1302 -6.1213 0.9446 32 1 2.2094 -6.6635 -1.8587 33 1 3.1658 -6.0906 -0.4711 34 1 1.8380 -8.4656 0.2846 35 1 5.5076 -10.6750 -1.3447 36 1 5.5565 -12.6467 0.3687 37 1 4.2069 -13.0499 -0.7348 38 1 4.1032 -11.8925 2.0678 39 1 2.9418 -12.9909 1.2508 40 1 2.5128 -10.2530 1.4770 41 1 1.8837 -11.2214 0.1102 42 1 2.1676 -4.0417 1.0190 43 1 2.8332 -3.7413 -0.6154 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317784491.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:56:29 Heat of formation + Delta-G solvation = -13.010302 kcal Electronic energy + Delta-G solvation = -21060.783961 eV Core-core repulsion = 17913.008634 eV Total energy + Delta-G solvation = -3147.775327 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.11371 -38.17122 -37.61009 -35.20192 -32.99730 -31.00501 -29.71705 -29.03173 -28.56232 -26.49228 -24.70218 -22.78131 -21.94254 -21.00084 -19.95829 -19.68092 -18.71970 -17.38012 -16.83781 -16.13909 -15.76846 -15.50935 -14.80760 -14.63345 -14.41431 -13.71210 -13.65313 -13.17652 -13.03346 -12.45928 -12.34755 -12.24137 -12.01121 -11.91172 -11.80735 -11.61333 -11.56038 -11.49401 -11.06734 -10.83522 -10.73665 -10.12412 -10.10756 -9.93211 -9.79879 -9.71717 -9.57403 -9.31134 -9.01215 -8.55101 -6.77053 -5.66229 -2.99152 1.16304 3.15484 3.19320 3.43660 3.48497 3.50467 4.14628 4.21261 4.54647 4.59064 4.71953 4.91989 4.96366 5.13107 5.25095 5.28382 5.32966 5.39070 5.42596 5.52501 5.56446 5.64654 5.69339 5.76337 5.79709 5.90841 6.01833 6.05750 6.16032 6.23700 6.24789 6.41841 6.44525 6.59194 6.63916 6.77887 7.01801 7.45626 7.61822 7.68346 7.87937 8.16756 8.31832 9.27968 9.88416 10.54980 11.45684 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.036544 B = 0.002757 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.023437 B =10154.210708 C =10609.448896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.011 4.011 3 Si 0.912 3.088 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.226 4.226 8 H 0.077 0.923 9 N -0.607 5.607 10 C 0.177 3.823 11 C -0.138 4.138 12 C -0.101 4.101 13 H 0.076 0.924 14 C -0.116 4.116 15 C 0.117 3.883 16 N -0.723 5.723 17 C 0.561 3.439 18 O -0.543 6.543 19 C -0.193 4.193 20 C -0.077 4.077 21 C -0.108 4.108 22 C -0.123 4.123 23 C -0.092 4.092 24 C 0.140 3.860 25 H 0.251 0.749 26 H 0.045 0.955 27 H 0.041 0.959 28 H 0.058 0.942 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.399 0.601 35 H 0.138 0.862 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.074 0.926 39 H 0.076 0.924 40 H 0.074 0.926 41 H 0.079 0.921 42 H 0.017 0.983 43 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.771 -25.428 1.878 25.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.207 4.207 3 Si 0.742 3.258 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.354 4.354 8 H 0.095 0.905 9 N -0.333 5.333 10 C 0.052 3.948 11 C -0.177 4.177 12 C -0.121 4.121 13 H 0.094 0.906 14 C -0.154 4.154 15 C -0.006 4.006 16 N -0.374 5.374 17 C 0.349 3.651 18 O -0.421 6.421 19 C -0.196 4.196 20 C -0.096 4.096 21 C -0.144 4.144 22 C -0.161 4.161 23 C -0.129 4.129 24 C 0.013 3.987 25 H 0.062 0.938 26 H 0.063 0.937 27 H 0.059 0.941 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.233 0.767 35 H 0.156 0.844 36 H 0.098 0.902 37 H 0.103 0.897 38 H 0.093 0.907 39 H 0.095 0.905 40 H 0.093 0.907 41 H 0.098 0.902 42 H 0.035 0.965 43 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 3.278 -24.793 1.346 25.045 hybrid contribution 0.084 0.811 0.253 0.854 sum 3.362 -23.982 1.599 24.270 Atomic orbital electron populations 1.69974 1.04870 1.24907 1.57415 1.24803 0.95733 0.97657 1.02468 0.86117 0.78576 0.83522 0.77564 1.21625 1.21716 1.20715 1.19084 0.90459 0.82514 1.43369 0.90488 1.44504 1.01750 0.99970 1.87123 1.21124 0.84351 0.88363 1.00931 1.22899 0.95927 0.99486 0.99344 1.22271 0.97650 0.91948 1.00191 0.90591 1.21742 0.96131 0.96722 1.00799 1.21517 0.99073 0.80492 0.99545 1.45983 1.27087 1.14678 1.49657 1.17990 0.81174 0.85382 0.80586 1.90811 1.43658 1.71915 1.35737 1.21881 0.99930 0.94139 1.03693 1.24055 0.96091 0.94034 0.95436 1.21482 1.00419 0.95182 0.97355 1.22425 0.97584 0.97871 0.98199 1.21255 0.97758 0.96249 0.97636 1.21618 0.94336 0.86092 0.96612 0.93846 0.93724 0.94110 0.92374 0.92594 0.91674 0.91309 0.91379 0.90868 0.76662 0.84442 0.90192 0.89694 0.90747 0.90492 0.90725 0.90212 0.96511 0.94437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.76 10.31 55.49 0.57 -27.19 16 2 C -0.01 -0.31 5.49 -17.43 -0.10 -0.41 16 3 Si 0.91 22.66 29.55 -169.99 -5.02 17.63 16 4 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.23 -6.50 10.28 -15.06 -0.15 -6.65 16 8 H 0.08 2.15 7.83 -52.48 -0.41 1.74 16 9 N -0.61 -15.98 3.40 -170.04 -0.58 -16.56 16 10 C 0.18 4.38 5.37 -3.06 -0.02 4.37 16 11 C -0.14 -2.55 6.42 -24.90 -0.16 -2.71 16 12 C -0.10 -1.71 3.04 -88.47 -0.27 -1.98 16 13 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 14 C -0.12 -1.47 4.84 -26.73 -0.13 -1.60 16 15 C 0.12 1.55 5.55 -4.04 -0.02 1.53 16 16 N -0.72 -8.24 5.55 -61.49 -0.34 -8.58 16 17 C 0.56 7.43 7.79 -12.67 -0.10 7.33 16 18 O -0.54 -9.48 16.77 5.26 0.09 -9.39 16 19 C -0.19 -1.91 6.09 -102.73 -0.63 -2.54 16 20 C -0.08 -0.68 10.43 -36.01 -0.38 -1.05 16 21 C -0.11 -0.63 6.80 -26.85 -0.18 -0.81 16 22 C -0.12 -0.66 7.16 -25.08 -0.18 -0.84 16 23 C -0.09 -0.61 6.02 -26.86 -0.16 -0.77 16 24 C 0.14 2.94 6.04 -2.51 -0.02 2.92 16 25 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 26 H 0.04 1.22 7.38 -51.93 -0.38 0.84 16 27 H 0.04 1.11 7.50 -51.93 -0.39 0.72 16 28 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 29 H 0.06 0.95 8.04 -51.93 -0.42 0.54 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.07 0.85 8.04 -51.93 -0.42 0.43 16 32 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.07 1.11 7.59 -51.93 -0.39 0.71 16 34 H 0.40 3.36 7.48 -40.82 -0.31 3.06 16 35 H 0.14 1.27 8.03 -52.49 -0.42 0.85 16 36 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 37 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.07 0.45 7.83 -51.93 -0.41 0.04 16 41 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.02 0.36 7.96 -51.93 -0.41 -0.06 16 43 H 0.04 0.79 8.10 -51.93 -0.42 0.37 16 LS Contribution 345.59 15.07 5.21 5.21 Total: -1.00 -33.90 345.59 -9.88 -43.78 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: -7.32 Total: -1.68 kcal Atomic # 6 Polarization: -0.73 SS G_CDS: -2.49 Total: -3.22 kcal Atomic # 7 Polarization: -51.98 SS G_CDS: -0.35 Total: -52.33 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: 0.09 Total: -9.39 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.63 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.90 -9.88 -43.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317784491.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.766 kcal (2) G-P(sol) polarization free energy of solvation -33.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds