Wall clock time and date at job start Mon Mar 30 2020 23:56:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86799 * 120.00182 * 2 1 4 4 H 1.48503 * 109.46810 * 270.00263 * 3 2 1 5 5 H 1.48498 * 109.47328 * 29.99796 * 3 2 1 6 6 H 1.48497 * 109.47248 * 150.00169 * 3 2 1 7 7 C 1.38811 * 119.99886 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99822 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00343 * 0.02562 * 7 2 1 10 10 C 1.47026 * 125.64755 * 359.97041 * 9 7 2 11 11 C 1.54319 * 107.27228 * 178.97936 * 10 9 7 12 12 C 1.55160 * 102.94278 * 337.80887 * 11 10 9 13 13 H 1.08998 * 110.99895 * 277.38754 * 12 11 10 14 14 C 1.52999 * 111.00168 * 153.57979 * 12 11 10 15 15 C 1.53006 * 109.46626 * 178.17940 * 14 12 11 16 16 N 1.46500 * 109.46998 * 179.97438 * 15 14 12 17 17 C 1.34769 * 120.00241 * 180.02562 * 16 15 14 18 18 O 1.21616 * 119.99624 * 359.97438 * 17 16 15 19 19 C 1.47098 * 120.00366 * 180.02562 * 17 16 15 20 20 C 1.32617 * 124.62565 * 179.69594 * 19 17 16 21 21 C 1.51111 * 110.76124 * 179.84153 * 20 19 17 22 22 C 1.54578 * 104.90085 * 343.80557 * 21 20 19 23 23 C 1.51113 * 124.61875 * 359.97438 * 19 17 16 24 24 C 1.47468 * 125.63207 * 179.97438 * 9 7 2 25 25 H 0.96999 * 119.99817 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.88030 * 59.55688 * 10 9 7 27 27 H 1.09004 * 110.00852 * 298.47088 * 10 9 7 28 28 H 1.09003 * 110.71912 * 219.44250 * 11 10 9 29 29 H 1.09000 * 110.87316 * 96.24399 * 11 10 9 30 30 H 1.08993 * 109.47839 * 58.18009 * 14 12 11 31 31 H 1.09000 * 109.47160 * 298.17571 * 14 12 11 32 32 H 1.09000 * 109.47050 * 299.99699 * 15 14 12 33 33 H 1.09001 * 109.46801 * 59.99811 * 15 14 12 34 34 H 0.97010 * 119.99910 * 359.97438 * 16 15 14 35 35 H 1.08002 * 124.61541 * 0.02562 * 20 19 17 36 36 H 1.09000 * 110.51753 * 224.85250 * 21 20 19 37 37 H 1.09000 * 110.24222 * 102.62287 * 21 20 19 38 38 H 1.08994 * 110.98116 * 266.70857 * 22 21 20 39 39 H 1.09002 * 111.01310 * 142.92317 * 22 21 20 40 40 H 1.09001 * 110.36599 * 315.44298 * 23 19 17 41 41 H 1.09004 * 110.36513 * 77.65279 * 23 19 17 42 42 H 1.09000 * 110.34671 * 85.25009 * 24 9 7 43 43 H 1.08991 * 110.40643 * 322.91703 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.1375 -2.5328 0.0006 11 6 -0.4484 -4.0441 -0.0257 12 6 0.8520 -4.6563 -0.6101 13 1 0.8566 -4.5975 -1.6985 14 6 1.0369 -6.1009 -0.1412 15 6 2.3027 -6.6840 -0.7729 16 7 2.4802 -8.0670 -0.3234 17 6 3.5362 -8.7852 -0.7539 18 8 4.3415 -8.2853 -1.5159 19 6 3.7141 -10.1740 -0.3031 20 6 4.7133 -10.9640 -0.6723 21 6 4.5916 -12.3219 -0.0206 22 6 3.5858 -12.1191 1.1356 23 6 2.7799 -10.8971 0.6392 24 6 1.9341 -3.7314 0.0005 25 1 -0.4850 0.8400 0.0004 26 1 -0.5575 -2.0524 -0.8830 27 1 -0.5567 -2.0837 0.9010 28 1 -1.2985 -4.2517 -0.6756 29 1 -0.6333 -4.4201 0.9806 30 1 0.1739 -6.6943 -0.4429 31 1 1.1302 -6.1213 0.9446 32 1 2.2094 -6.6635 -1.8587 33 1 3.1658 -6.0906 -0.4711 34 1 1.8380 -8.4656 0.2846 35 1 5.5076 -10.6750 -1.3447 36 1 5.5565 -12.6467 0.3687 37 1 4.2069 -13.0499 -0.7348 38 1 4.1032 -11.8925 2.0678 39 1 2.9418 -12.9909 1.2508 40 1 2.5128 -10.2530 1.4770 41 1 1.8837 -11.2214 0.1102 42 1 2.1676 -4.0417 1.0190 43 1 2.8332 -3.7413 -0.6154 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317784491.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:56:29 Heat of formation + Delta-G solvation = -34.833790 kcal Electronic energy + Delta-G solvation = -21061.730298 eV Core-core repulsion = 17913.008634 eV Total energy + Delta-G solvation = -3148.721665 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.03647 -39.47780 -38.62844 -36.48511 -34.76093 -32.59690 -30.92918 -30.18927 -29.29684 -28.00493 -26.52436 -24.04046 -22.90192 -21.87579 -21.55203 -21.04492 -19.65819 -18.87165 -18.11560 -17.07353 -16.92010 -16.68822 -16.40586 -15.96419 -15.60846 -15.36886 -14.97683 -14.13799 -13.85836 -13.81944 -13.67813 -13.55375 -13.34734 -13.08845 -12.92235 -12.82604 -12.64532 -12.58165 -12.26925 -12.04088 -12.01882 -11.97505 -11.81060 -11.57061 -11.40320 -11.33486 -10.97222 -10.71618 -10.21224 -9.80383 -8.89814 -7.86461 -5.21724 0.38095 1.43234 1.45645 1.54362 2.21196 2.26590 2.48329 3.31161 3.54711 3.66115 3.66702 3.78864 3.96940 4.10066 4.15679 4.24128 4.32194 4.34270 4.35892 4.60640 4.67896 4.74377 4.81891 4.84969 4.90005 4.93277 4.99257 5.00497 5.11674 5.16152 5.20878 5.24409 5.36427 5.39833 5.43494 5.45543 5.51755 5.55699 5.70475 5.78899 6.20142 6.56370 7.10265 7.21894 7.78065 8.42337 9.23928 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.036544 B = 0.002757 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.023437 B =10154.210708 C =10609.448896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.069 4.069 3 Si 0.979 3.021 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.270 1.270 7 C -0.245 4.245 8 H 0.078 0.922 9 N -0.632 5.632 10 C 0.181 3.819 11 C -0.122 4.122 12 C -0.086 4.086 13 H 0.071 0.929 14 C -0.098 4.098 15 C 0.122 3.878 16 N -0.708 5.708 17 C 0.553 3.447 18 O -0.597 6.597 19 C -0.213 4.213 20 C -0.075 4.075 21 C -0.104 4.104 22 C -0.120 4.120 23 C -0.088 4.088 24 C 0.133 3.867 25 H 0.247 0.753 26 H 0.007 0.993 27 H 0.005 0.995 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.098 0.902 31 H 0.081 0.919 32 H 0.058 0.942 33 H 0.049 0.951 34 H 0.417 0.583 35 H 0.123 0.877 36 H 0.092 0.908 37 H 0.100 0.900 38 H 0.075 0.925 39 H 0.097 0.903 40 H 0.082 0.918 41 H 0.092 0.908 42 H 0.025 0.975 43 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.426 -28.162 2.820 28.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.261 4.261 3 Si 0.807 3.193 4 H -0.213 1.213 5 H -0.218 1.218 6 H -0.195 1.195 7 C -0.374 4.374 8 H 0.096 0.904 9 N -0.358 5.358 10 C 0.056 3.944 11 C -0.160 4.160 12 C -0.106 4.106 13 H 0.090 0.910 14 C -0.136 4.136 15 C -0.002 4.002 16 N -0.360 5.360 17 C 0.343 3.657 18 O -0.480 6.480 19 C -0.216 4.216 20 C -0.095 4.095 21 C -0.141 4.141 22 C -0.157 4.157 23 C -0.125 4.125 24 C 0.008 3.992 25 H 0.056 0.944 26 H 0.025 0.975 27 H 0.023 0.977 28 H 0.101 0.899 29 H 0.096 0.904 30 H 0.116 0.884 31 H 0.100 0.900 32 H 0.076 0.924 33 H 0.067 0.933 34 H 0.254 0.746 35 H 0.141 0.859 36 H 0.110 0.890 37 H 0.118 0.882 38 H 0.094 0.906 39 H 0.115 0.885 40 H 0.101 0.899 41 H 0.110 0.890 42 H 0.043 0.957 43 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 2.919 -27.578 2.318 27.829 hybrid contribution 0.259 1.645 -0.066 1.666 sum 3.178 -25.933 2.252 26.224 Atomic orbital electron populations 1.70200 1.06248 1.25251 1.58377 1.25675 0.96702 1.01065 1.02685 0.85068 0.77631 0.79061 0.77525 1.21252 1.21755 1.19484 1.19467 0.90918 0.84064 1.42946 0.90426 1.44863 1.02741 1.01226 1.86984 1.20944 0.83506 0.92572 0.97420 1.22761 0.97302 0.94466 1.01441 1.22153 0.94985 0.93749 0.99696 0.91041 1.21583 0.96881 0.93749 1.01352 1.21309 0.98534 0.81336 0.99058 1.45800 1.27029 1.13741 1.49386 1.18612 0.80613 0.86704 0.79746 1.90779 1.45578 1.73312 1.38312 1.21940 1.01681 0.92583 1.05434 1.24355 0.95036 0.95635 0.94477 1.21547 1.01481 0.93339 0.97697 1.22460 0.97459 0.97977 0.97791 1.21307 0.97539 0.96496 0.97133 1.21834 0.95367 0.84800 0.97181 0.94385 0.97490 0.97718 0.89888 0.90400 0.88357 0.89995 0.92396 0.93271 0.74559 0.85891 0.88998 0.88210 0.90580 0.88486 0.89930 0.88999 0.95727 0.95107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.11 10.31 21.65 0.22 -58.89 16 2 C -0.07 -4.06 5.49 84.86 0.47 -3.59 16 3 Si 0.98 47.45 29.55 68.60 2.03 49.48 16 4 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 5 H -0.29 -14.02 7.11 99.48 0.71 -13.32 16 6 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 7 C -0.24 -14.43 10.28 84.03 0.86 -13.56 16 8 H 0.08 4.42 7.83 -2.91 -0.02 4.39 16 9 N -0.63 -33.97 3.40 -691.90 -2.35 -36.32 16 10 C 0.18 9.15 5.37 86.73 0.47 9.61 16 11 C -0.12 -4.25 6.42 31.78 0.20 -4.04 16 12 C -0.09 -2.78 3.04 -9.40 -0.03 -2.81 16 13 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 14 C -0.10 -2.17 4.84 30.60 0.15 -2.02 16 15 C 0.12 3.07 5.55 86.38 0.48 3.55 16 16 N -0.71 -14.90 5.55 -466.71 -2.59 -17.49 16 17 C 0.55 14.42 7.79 86.57 0.67 15.10 16 18 O -0.60 -21.49 16.77 -4.08 -0.07 -21.56 16 19 C -0.21 -3.92 6.09 -18.57 -0.11 -4.04 16 20 C -0.08 -1.25 10.43 24.66 0.26 -0.99 16 21 C -0.10 -0.93 6.80 30.52 0.21 -0.72 16 22 C -0.12 -0.87 7.16 31.66 0.23 -0.65 16 23 C -0.09 -0.90 6.02 30.51 0.18 -0.72 16 24 C 0.13 5.59 6.04 86.85 0.52 6.11 16 25 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 26 H 0.01 0.39 7.38 -2.39 -0.02 0.37 16 27 H 0.00 0.26 7.50 -2.39 -0.02 0.24 16 28 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 29 H 0.08 2.41 8.04 -2.39 -0.02 2.39 16 30 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.08 1.69 8.04 -2.39 -0.02 1.67 16 32 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.05 1.49 7.59 -2.39 -0.02 1.47 16 34 H 0.42 5.72 7.48 -92.70 -0.69 5.03 16 35 H 0.12 2.33 8.03 -2.91 -0.02 2.31 16 36 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 37 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 39 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 40 H 0.08 0.71 7.83 -2.39 -0.02 0.69 16 41 H 0.09 0.73 8.14 -2.38 -0.02 0.71 16 42 H 0.02 1.01 7.96 -2.39 -0.02 0.99 16 43 H 0.03 1.31 8.10 -2.39 -0.02 1.30 16 Total: -1.00 -77.73 345.59 2.09 -75.64 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: 0.29 Total: 7.92 kcal Atomic # 6 Polarization: -3.34 SS G_CDS: 4.56 Total: 1.22 kcal Atomic # 7 Polarization: -107.98 SS G_CDS: -4.72 Total: -112.69 kcal Atomic # 8 Polarization: -21.49 SS G_CDS: -0.07 Total: -21.56 kcal Atomic # 14 Polarization: 47.45 SS G_CDS: 2.03 Total: 49.48 kcal Total: -77.73 2.09 -75.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317784491.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.802 kcal (2) G-P(sol) polarization free energy of solvation -77.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds