Wall clock time and date at job start Mon Mar 30 2020 23:55:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86797 * 120.00111 * 2 1 4 4 H 1.48500 * 109.47380 * 272.07535 * 3 2 1 5 5 H 1.48508 * 109.47303 * 32.07277 * 3 2 1 6 6 H 1.48500 * 109.47411 * 152.07171 * 3 2 1 7 7 C 1.38807 * 119.99644 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00582 * 3.06889 * 7 2 1 9 9 N 1.36941 * 119.99786 * 183.07269 * 7 2 1 10 10 C 1.46496 * 119.99968 * 173.91243 * 9 7 2 11 11 C 1.53009 * 109.47091 * 185.12078 * 10 9 7 12 12 N 1.46500 * 110.53993 * 302.82391 * 11 10 9 13 13 C 1.34781 * 119.99773 * 297.82790 * 12 11 10 14 14 O 1.21612 * 120.00110 * 5.20514 * 13 12 11 15 15 C 1.47101 * 119.99689 * 185.20616 * 13 12 11 16 16 C 1.32617 * 124.61893 * 180.02562 * 15 13 12 17 17 C 1.51112 * 110.75870 * 180.02562 * 16 15 13 18 18 C 1.54575 * 104.84012 * 16.59676 * 17 16 15 19 19 C 1.51107 * 124.62047 * 359.72614 * 15 13 12 20 20 C 1.54889 * 110.48165 * 65.43370 * 11 10 9 21 21 C 1.54894 * 102.74377 * 156.61852 * 20 11 10 22 22 C 1.54254 * 104.19913 * 322.05923 * 21 20 11 23 23 C 1.53881 * 106.60099 * 23.60961 * 22 21 20 24 24 H 0.97005 * 119.99888 * 359.97438 * 1 2 3 25 25 H 0.96997 * 120.00267 * 353.91121 * 9 7 2 26 26 H 1.09002 * 109.47129 * 65.12330 * 10 9 7 27 27 H 1.08998 * 109.47385 * 305.12471 * 10 9 7 28 28 H 0.96993 * 120.00219 * 117.82421 * 12 11 10 29 29 H 1.07999 * 124.62054 * 359.97438 * 16 15 13 30 30 H 1.08993 * 110.36506 * 135.43768 * 17 16 15 31 31 H 1.08997 * 110.36269 * 257.76077 * 17 16 15 32 32 H 1.09007 * 110.98642 * 93.07198 * 18 17 16 33 33 H 1.08997 * 110.98373 * 216.83490 * 18 17 16 34 34 H 1.09000 * 110.36546 * 282.23604 * 19 15 13 35 35 H 1.09004 * 110.36800 * 44.55943 * 19 15 13 36 36 H 1.08999 * 110.75889 * 274.93323 * 20 11 10 37 37 H 1.08999 * 110.75466 * 38.30792 * 20 11 10 38 38 H 1.09004 * 110.48387 * 80.74056 * 21 20 11 39 39 H 1.09007 * 110.48597 * 203.37517 * 21 20 11 40 40 H 1.09007 * 110.03253 * 264.32363 * 22 21 20 41 41 H 1.08997 * 110.03561 * 142.89470 * 22 21 20 42 42 H 1.09005 * 110.03009 * 240.72198 * 23 22 21 43 43 H 1.08991 * 110.03243 * 119.28576 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4538 2.0718 -1.3991 5 1 1.4703 2.6397 0.7435 6 1 3.5690 1.4279 0.6557 7 6 2.0102 -1.2022 -0.0005 8 1 1.4714 -2.1368 -0.0510 9 7 3.3781 -1.2031 0.0630 10 6 4.1043 -2.4683 0.1970 11 6 5.5973 -2.1833 0.3730 12 7 6.1067 -1.3967 -0.7531 13 6 6.0701 -1.9046 -2.0010 14 8 5.5293 -2.9743 -2.2066 15 6 6.6844 -1.1650 -3.1143 16 6 6.7014 -1.5776 -4.3746 17 6 7.4133 -0.5777 -5.2559 18 6 8.2059 0.3188 -4.2774 19 6 7.3765 0.1714 -2.9789 20 6 5.8541 -1.4449 1.7102 21 6 7.3371 -1.7801 2.0062 22 6 7.4922 -3.2454 1.5497 23 6 6.3860 -3.5018 0.5113 24 1 -0.4850 0.8401 0.0004 25 1 3.8662 -0.3660 0.0193 26 1 3.9526 -3.0709 -0.6985 27 1 3.7328 -3.0102 1.0667 28 1 6.4702 -0.5105 -0.6006 29 1 6.2663 -2.5025 -4.7233 30 1 8.0932 -1.0892 -5.9372 31 1 6.6910 0.0170 -5.8150 32 1 9.2213 -0.0538 -4.1417 33 1 8.2145 1.3546 -4.6168 34 1 6.6419 0.9729 -2.9011 35 1 8.0335 0.1720 -2.1091 36 1 5.7174 -0.3702 1.5905 37 1 5.2061 -1.8327 2.4962 38 1 7.9971 -1.1297 1.4321 39 1 7.5433 -1.6888 3.0727 40 1 7.3691 -3.9164 2.3999 41 1 8.4720 -3.3933 1.0957 42 1 5.7259 -4.2972 0.8576 43 1 6.8289 -3.7741 -0.4466 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318623778.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:55:28 Heat of formation + Delta-G solvation = -18.465375 kcal Electronic energy + Delta-G solvation = -22761.420172 eV Core-core repulsion = 19613.408295 eV Total energy + Delta-G solvation = -3148.011877 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.28066 -38.54772 -36.99011 -34.42669 -33.12809 -31.28188 -29.59470 -28.75333 -28.61680 -27.89213 -24.57621 -22.55724 -21.83366 -21.04803 -20.36341 -19.13559 -18.53726 -17.55691 -17.12442 -15.92139 -15.72555 -14.99939 -14.76048 -14.40583 -14.35962 -14.13390 -13.22669 -13.00355 -12.89107 -12.75585 -12.62861 -12.14184 -12.06362 -11.79972 -11.71315 -11.38523 -11.37035 -11.26857 -11.12623 -10.97342 -10.87464 -10.66708 -10.51918 -10.36318 -10.12647 -9.56206 -9.45259 -8.95858 -8.73730 -8.59011 -7.09109 -5.69757 -3.02935 1.50943 3.35694 3.39200 3.44738 3.46726 3.60532 4.40750 4.47393 4.62317 4.63451 4.76442 4.82765 4.93983 5.04548 5.21774 5.44279 5.48555 5.52257 5.57529 5.60282 5.61619 5.63656 5.68056 5.71215 5.80068 5.87079 5.89906 5.92462 6.01307 6.05896 6.18512 6.28090 6.32841 6.38669 6.47874 6.53934 6.56330 6.91186 7.10894 7.86215 8.10348 8.49607 8.59576 9.30266 10.02488 10.24540 11.49255 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.011995 B = 0.007303 C = 0.005461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2333.678020 B = 3832.907291 C = 5125.690426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.001 3.999 3 Si 0.884 3.116 4 H -0.287 1.287 5 H -0.292 1.292 6 H -0.279 1.279 7 C -0.233 4.233 8 H 0.089 0.911 9 N -0.750 5.750 10 C 0.150 3.850 11 C 0.165 3.835 12 N -0.708 5.708 13 C 0.569 3.431 14 O -0.530 6.530 15 C -0.188 4.188 16 C -0.082 4.082 17 C -0.106 4.106 18 C -0.122 4.122 19 C -0.093 4.093 20 C -0.120 4.120 21 C -0.125 4.125 22 C -0.122 4.122 23 C -0.122 4.122 24 H 0.257 0.743 25 H 0.358 0.642 26 H 0.048 0.952 27 H 0.034 0.966 28 H 0.394 0.606 29 H 0.137 0.863 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.088 0.912 38 H 0.061 0.939 39 H 0.064 0.936 40 H 0.062 0.938 41 H 0.058 0.942 42 H 0.074 0.926 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.412 -0.606 -3.321 21.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.194 4.194 3 Si 0.715 3.285 4 H -0.214 1.214 5 H -0.218 1.218 6 H -0.205 1.205 7 C -0.364 4.364 8 H 0.106 0.894 9 N -0.395 5.395 10 C 0.022 3.978 11 C 0.079 3.921 12 N -0.359 5.359 13 C 0.357 3.643 14 O -0.408 6.408 15 C -0.191 4.191 16 C -0.102 4.102 17 C -0.143 4.143 18 C -0.159 4.159 19 C -0.131 4.131 20 C -0.158 4.158 21 C -0.162 4.162 22 C -0.159 4.159 23 C -0.161 4.161 24 H 0.068 0.932 25 H 0.190 0.810 26 H 0.066 0.934 27 H 0.052 0.948 28 H 0.228 0.772 29 H 0.155 0.845 30 H 0.095 0.905 31 H 0.103 0.897 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.099 0.901 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.106 0.894 38 H 0.080 0.920 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.076 0.924 42 H 0.093 0.907 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 20.801 -1.476 -3.426 21.133 hybrid contribution 0.556 1.736 0.033 1.823 sum 21.358 0.260 -3.393 21.627 Atomic orbital electron populations 1.69710 1.05035 1.25526 1.58252 1.24655 0.95190 0.97002 1.02582 0.86544 0.79135 0.85324 0.77505 1.21370 1.21843 1.20504 1.19083 0.80883 0.94706 1.41687 0.89361 1.42561 1.03993 1.02620 1.90347 1.21077 0.87070 0.89829 0.99813 1.21458 0.94689 0.90891 0.85062 1.45806 1.63660 1.19852 1.06551 1.17806 0.78947 0.85286 0.82270 1.90767 1.43405 1.22645 1.83960 1.21924 1.04237 0.97989 0.94923 1.23984 0.94391 0.98168 0.93620 1.21461 0.98764 0.96195 0.97873 1.22447 0.98718 1.00054 0.94707 1.21306 0.98348 0.94672 0.98725 1.22744 0.96100 1.00592 0.96354 1.22398 0.96699 0.96436 1.00701 1.22129 0.98607 0.96598 0.98607 1.22418 0.97094 0.97063 0.99566 0.93242 0.80987 0.93383 0.94779 0.77187 0.84493 0.90478 0.89728 0.90953 0.90685 0.90124 0.90992 0.91121 0.89385 0.92037 0.91683 0.91890 0.92352 0.90721 0.90903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -30.26 13.97 55.49 0.78 -29.48 16 2 C 0.00 0.02 5.50 -17.43 -0.10 -0.07 16 3 Si 0.88 22.55 27.81 -169.99 -4.73 17.82 16 4 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 5 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 6 H -0.28 -6.53 6.42 56.52 0.36 -6.17 16 7 C -0.23 -6.90 10.47 -15.06 -0.16 -7.06 16 8 H 0.09 2.82 8.06 -52.49 -0.42 2.40 16 9 N -0.75 -18.55 5.09 -59.91 -0.30 -18.85 16 10 C 0.15 3.18 4.86 -4.04 -0.02 3.17 16 11 C 0.17 2.69 0.39 -130.16 -0.05 2.63 16 12 N -0.71 -10.98 4.63 -47.23 -0.22 -11.19 16 13 C 0.57 9.71 6.95 -12.66 -0.09 9.62 16 14 O -0.53 -10.87 13.72 5.27 0.07 -10.80 16 15 C -0.19 -2.60 6.09 -102.73 -0.63 -3.23 16 16 C -0.08 -1.03 10.43 -36.01 -0.38 -1.40 16 17 C -0.11 -0.98 6.80 -26.85 -0.18 -1.16 16 18 C -0.12 -1.03 7.17 -24.97 -0.18 -1.21 16 19 C -0.09 -0.99 6.01 -26.75 -0.16 -1.15 16 20 C -0.12 -1.71 5.56 -24.74 -0.14 -1.85 16 21 C -0.12 -1.39 6.79 -25.08 -0.17 -1.56 16 22 C -0.12 -1.39 6.80 -25.62 -0.17 -1.57 16 23 C -0.12 -1.77 5.68 -25.61 -0.15 -1.91 16 24 H 0.26 7.91 8.31 -40.82 -0.34 7.57 16 25 H 0.36 8.50 5.10 -40.82 -0.21 8.30 16 26 H 0.05 1.15 6.33 -51.93 -0.33 0.82 16 27 H 0.03 0.73 8.11 -51.93 -0.42 0.31 16 28 H 0.39 5.22 7.54 -40.82 -0.31 4.91 16 29 H 0.14 1.77 8.03 -52.49 -0.42 1.35 16 30 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.07 0.55 8.14 -51.92 -0.42 0.12 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.07 0.66 7.90 -51.93 -0.41 0.25 16 36 H 0.07 1.04 8.06 -51.93 -0.42 0.62 16 37 H 0.09 1.31 8.04 -51.93 -0.42 0.89 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.06 0.65 8.14 -51.92 -0.42 0.22 16 40 H 0.06 0.66 8.14 -51.92 -0.42 0.24 16 41 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.07 1.09 7.84 -51.93 -0.41 0.68 16 43 H 0.07 1.14 6.51 -51.93 -0.34 0.80 16 LS Contribution 338.46 15.07 5.10 5.10 Total: -1.00 -34.44 338.46 -8.95 -43.38 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: -7.08 Total: 10.77 kcal Atomic # 6 Polarization: -4.19 SS G_CDS: -2.56 Total: -6.75 kcal Atomic # 7 Polarization: -59.78 SS G_CDS: 0.25 Total: -59.53 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: 0.07 Total: -10.80 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -4.73 Total: 17.82 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -34.44 -8.95 -43.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318623778.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.918 kcal (2) G-P(sol) polarization free energy of solvation -34.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds