Wall clock time and date at job start Mon Mar 30 2020 23:55:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86797 * 120.00111 * 2 1 4 4 H 1.48500 * 109.47380 * 272.07535 * 3 2 1 5 5 H 1.48508 * 109.47303 * 32.07277 * 3 2 1 6 6 H 1.48500 * 109.47411 * 152.07171 * 3 2 1 7 7 C 1.38807 * 119.99644 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00582 * 3.06889 * 7 2 1 9 9 N 1.36941 * 119.99786 * 183.07269 * 7 2 1 10 10 C 1.46496 * 119.99968 * 173.91243 * 9 7 2 11 11 C 1.53009 * 109.47091 * 185.12078 * 10 9 7 12 12 N 1.46500 * 110.53993 * 302.82391 * 11 10 9 13 13 C 1.34781 * 119.99773 * 297.82790 * 12 11 10 14 14 O 1.21612 * 120.00110 * 5.20514 * 13 12 11 15 15 C 1.47101 * 119.99689 * 185.20616 * 13 12 11 16 16 C 1.32617 * 124.61893 * 180.02562 * 15 13 12 17 17 C 1.51112 * 110.75870 * 180.02562 * 16 15 13 18 18 C 1.54575 * 104.84012 * 16.59676 * 17 16 15 19 19 C 1.51107 * 124.62047 * 359.72614 * 15 13 12 20 20 C 1.54889 * 110.48165 * 65.43370 * 11 10 9 21 21 C 1.54894 * 102.74377 * 156.61852 * 20 11 10 22 22 C 1.54254 * 104.19913 * 322.05923 * 21 20 11 23 23 C 1.53881 * 106.60099 * 23.60961 * 22 21 20 24 24 H 0.97005 * 119.99888 * 359.97438 * 1 2 3 25 25 H 0.96997 * 120.00267 * 353.91121 * 9 7 2 26 26 H 1.09002 * 109.47129 * 65.12330 * 10 9 7 27 27 H 1.08998 * 109.47385 * 305.12471 * 10 9 7 28 28 H 0.96993 * 120.00219 * 117.82421 * 12 11 10 29 29 H 1.07999 * 124.62054 * 359.97438 * 16 15 13 30 30 H 1.08993 * 110.36506 * 135.43768 * 17 16 15 31 31 H 1.08997 * 110.36269 * 257.76077 * 17 16 15 32 32 H 1.09007 * 110.98642 * 93.07198 * 18 17 16 33 33 H 1.08997 * 110.98373 * 216.83490 * 18 17 16 34 34 H 1.09000 * 110.36546 * 282.23604 * 19 15 13 35 35 H 1.09004 * 110.36800 * 44.55943 * 19 15 13 36 36 H 1.08999 * 110.75889 * 274.93323 * 20 11 10 37 37 H 1.08999 * 110.75466 * 38.30792 * 20 11 10 38 38 H 1.09004 * 110.48387 * 80.74056 * 21 20 11 39 39 H 1.09007 * 110.48597 * 203.37517 * 21 20 11 40 40 H 1.09007 * 110.03253 * 264.32363 * 22 21 20 41 41 H 1.08997 * 110.03561 * 142.89470 * 22 21 20 42 42 H 1.09005 * 110.03009 * 240.72198 * 23 22 21 43 43 H 1.08991 * 110.03243 * 119.28576 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4538 2.0718 -1.3991 5 1 1.4703 2.6397 0.7435 6 1 3.5690 1.4279 0.6557 7 6 2.0102 -1.2022 -0.0005 8 1 1.4714 -2.1368 -0.0510 9 7 3.3781 -1.2031 0.0630 10 6 4.1043 -2.4683 0.1970 11 6 5.5973 -2.1833 0.3730 12 7 6.1067 -1.3967 -0.7531 13 6 6.0701 -1.9046 -2.0010 14 8 5.5293 -2.9743 -2.2066 15 6 6.6844 -1.1650 -3.1143 16 6 6.7014 -1.5776 -4.3746 17 6 7.4133 -0.5777 -5.2559 18 6 8.2059 0.3188 -4.2774 19 6 7.3765 0.1714 -2.9789 20 6 5.8541 -1.4449 1.7102 21 6 7.3371 -1.7801 2.0062 22 6 7.4922 -3.2454 1.5497 23 6 6.3860 -3.5018 0.5113 24 1 -0.4850 0.8401 0.0004 25 1 3.8662 -0.3660 0.0193 26 1 3.9526 -3.0709 -0.6985 27 1 3.7328 -3.0102 1.0667 28 1 6.4702 -0.5105 -0.6006 29 1 6.2663 -2.5025 -4.7233 30 1 8.0932 -1.0892 -5.9372 31 1 6.6910 0.0170 -5.8150 32 1 9.2213 -0.0538 -4.1417 33 1 8.2145 1.3546 -4.6168 34 1 6.6419 0.9729 -2.9011 35 1 8.0335 0.1720 -2.1091 36 1 5.7174 -0.3702 1.5905 37 1 5.2061 -1.8327 2.4962 38 1 7.9971 -1.1297 1.4321 39 1 7.5433 -1.6888 3.0727 40 1 7.3691 -3.9164 2.3999 41 1 8.4720 -3.3933 1.0957 42 1 5.7259 -4.2972 0.8576 43 1 6.8289 -3.7741 -0.4466 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318623778.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:55:28 Heat of formation + Delta-G solvation = -41.714296 kcal Electronic energy + Delta-G solvation = -22762.428321 eV Core-core repulsion = 19613.408295 eV Total energy + Delta-G solvation = -3149.020026 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.54329 -39.56338 -38.15554 -36.35879 -34.48498 -33.40690 -30.75409 -29.81796 -29.70714 -28.97981 -26.32502 -23.89205 -23.58802 -21.83154 -21.42735 -20.57538 -19.70425 -19.57892 -18.14691 -17.23755 -16.63308 -16.49964 -16.22786 -15.94367 -15.58955 -15.46926 -15.04696 -14.60486 -14.07647 -13.90581 -13.76020 -13.64100 -13.59492 -12.99014 -12.90046 -12.61202 -12.47931 -12.29599 -12.17634 -12.10467 -12.05335 -11.99615 -11.96165 -11.86265 -11.75668 -11.30540 -11.09098 -10.66873 -10.07565 -9.79456 -9.27998 -8.05396 -5.38851 0.42846 1.29946 1.37404 1.44931 2.23130 2.37300 2.45291 3.23133 3.39995 3.54862 3.64477 3.66794 3.82398 3.95131 4.12225 4.21623 4.31941 4.34964 4.49586 4.56787 4.63599 4.77382 4.79058 4.81777 4.84642 4.86298 4.89310 4.97775 5.06079 5.10104 5.14012 5.17857 5.27126 5.28758 5.36212 5.41264 5.48678 5.56479 5.68191 5.73850 6.17644 6.64427 7.04680 7.33197 7.79036 8.04139 9.16669 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.011995 B = 0.007303 C = 0.005461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2333.678020 B = 3832.907291 C = 5125.690426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.985 5.985 2 C -0.066 4.066 3 Si 0.960 3.040 4 H -0.281 1.281 5 H -0.291 1.291 6 H -0.242 1.242 7 C -0.237 4.237 8 H 0.043 0.957 9 N -0.743 5.743 10 C 0.150 3.850 11 C 0.167 3.833 12 N -0.699 5.699 13 C 0.559 3.441 14 O -0.579 6.579 15 C -0.213 4.213 16 C -0.080 4.080 17 C -0.103 4.103 18 C -0.113 4.113 19 C -0.090 4.090 20 C -0.119 4.119 21 C -0.112 4.112 22 C -0.114 4.114 23 C -0.119 4.119 24 H 0.259 0.741 25 H 0.366 0.634 26 H 0.014 0.986 27 H 0.028 0.972 28 H 0.408 0.592 29 H 0.121 0.879 30 H 0.097 0.903 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.093 0.907 34 H 0.077 0.923 35 H 0.088 0.912 36 H 0.071 0.929 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.086 0.914 40 H 0.075 0.925 41 H 0.073 0.927 42 H 0.063 0.937 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.322 1.922 -3.014 25.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.257 4.257 3 Si 0.786 3.214 4 H -0.207 1.207 5 H -0.217 1.217 6 H -0.166 1.166 7 C -0.368 4.368 8 H 0.061 0.939 9 N -0.389 5.389 10 C 0.022 3.978 11 C 0.080 3.920 12 N -0.350 5.350 13 C 0.349 3.651 14 O -0.460 6.460 15 C -0.216 4.216 16 C -0.100 4.100 17 C -0.140 4.140 18 C -0.151 4.151 19 C -0.128 4.128 20 C -0.157 4.157 21 C -0.150 4.150 22 C -0.152 4.152 23 C -0.158 4.158 24 H 0.067 0.933 25 H 0.200 0.800 26 H 0.032 0.968 27 H 0.046 0.954 28 H 0.245 0.755 29 H 0.139 0.861 30 H 0.116 0.884 31 H 0.110 0.890 32 H 0.104 0.896 33 H 0.112 0.888 34 H 0.095 0.905 35 H 0.106 0.894 36 H 0.090 0.910 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.105 0.895 40 H 0.094 0.906 41 H 0.092 0.908 42 H 0.082 0.918 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 24.771 1.057 -3.102 24.987 hybrid contribution -0.795 0.771 -0.137 1.116 sum 23.976 1.828 -3.238 24.263 Atomic orbital electron populations 1.69916 1.07306 1.26776 1.59550 1.25589 0.96221 1.01521 1.02340 0.85338 0.79131 0.78971 0.77979 1.20689 1.21733 1.16593 1.18992 0.83024 0.93303 1.41519 0.93871 1.42404 1.02268 1.04159 1.90066 1.21114 0.90803 0.88028 0.97816 1.21359 0.91132 0.92758 0.86703 1.45724 1.62963 1.20327 1.05954 1.18465 0.78340 0.84948 0.83391 1.90743 1.45657 1.24882 1.84731 1.22040 1.05687 0.99837 0.94082 1.24316 0.93350 0.98168 0.94186 1.21537 0.99044 0.95554 0.97816 1.22472 0.98719 1.00961 0.92922 1.21357 0.98498 0.92129 1.00774 1.22744 0.98546 1.00136 0.94316 1.22364 0.94197 0.96032 1.02376 1.22101 0.97744 0.97397 0.97918 1.22364 0.97753 0.95708 1.00001 0.93275 0.80008 0.96773 0.95429 0.75516 0.86137 0.88445 0.89040 0.89596 0.88803 0.90467 0.89362 0.90985 0.90286 0.90357 0.89520 0.90626 0.90838 0.91811 0.92485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -65.56 13.97 21.65 0.30 -65.26 16 2 C -0.07 -4.04 5.50 84.86 0.47 -3.57 16 3 Si 0.96 46.12 27.81 68.60 1.91 48.03 16 4 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 5 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 6 H -0.24 -10.05 6.42 99.48 0.64 -9.42 16 7 C -0.24 -14.59 10.47 84.03 0.88 -13.71 16 8 H 0.04 2.97 8.06 -2.91 -0.02 2.95 16 9 N -0.74 -37.33 5.09 -343.44 -1.75 -39.08 16 10 C 0.15 6.63 4.86 86.38 0.42 7.05 16 11 C 0.17 5.37 0.39 4.68 0.00 5.37 16 12 N -0.70 -20.95 4.63 -421.60 -1.95 -22.90 16 13 C 0.56 19.24 6.95 86.57 0.60 19.84 16 14 O -0.58 -25.02 13.72 -4.07 -0.06 -25.08 16 15 C -0.21 -5.71 6.09 -18.57 -0.11 -5.83 16 16 C -0.08 -1.96 10.43 24.66 0.26 -1.70 16 17 C -0.10 -1.61 6.80 30.51 0.21 -1.40 16 18 C -0.11 -1.48 7.17 31.74 0.23 -1.25 16 19 C -0.09 -1.65 6.01 30.58 0.18 -1.46 16 20 C -0.12 -3.13 5.56 31.89 0.18 -2.95 16 21 C -0.11 -2.06 6.79 31.67 0.21 -1.85 16 22 C -0.11 -2.29 6.80 31.32 0.21 -2.07 16 23 C -0.12 -3.41 5.68 31.32 0.18 -3.23 16 24 H 0.26 16.23 8.31 -92.70 -0.77 15.46 16 25 H 0.37 16.95 5.10 -92.71 -0.47 16.48 16 26 H 0.01 0.73 6.33 -2.39 -0.02 0.72 16 27 H 0.03 1.25 8.11 -2.39 -0.02 1.23 16 28 H 0.41 9.76 7.54 -92.71 -0.70 9.06 16 29 H 0.12 3.25 8.03 -2.91 -0.02 3.22 16 30 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.09 0.92 8.14 -2.38 -0.02 0.90 16 33 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.09 1.29 7.90 -2.38 -0.02 1.27 16 36 H 0.07 1.87 8.06 -2.39 -0.02 1.85 16 37 H 0.08 2.22 8.04 -2.39 -0.02 2.20 16 38 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 39 H 0.09 1.30 8.14 -2.38 -0.02 1.28 16 40 H 0.08 1.35 8.14 -2.38 -0.02 1.34 16 41 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.06 1.92 7.84 -2.38 -0.02 1.90 16 43 H 0.06 1.81 6.51 -2.39 -0.02 1.80 16 Total: -1.00 -79.40 338.46 2.13 -77.27 By element: Atomic # 1 Polarization: 34.02 SS G_CDS: -0.24 Total: 33.78 kcal Atomic # 6 Polarization: -10.68 SS G_CDS: 3.92 Total: -6.76 kcal Atomic # 7 Polarization: -123.84 SS G_CDS: -3.40 Total: -127.24 kcal Atomic # 8 Polarization: -25.02 SS G_CDS: -0.06 Total: -25.08 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 1.91 Total: 48.03 kcal Total: -79.40 2.13 -77.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318623778.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.554 kcal (2) G-P(sol) polarization free energy of solvation -79.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds