Wall clock time and date at job start Mon Mar 30 2020 23:55:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86796 * 120.00152 * 2 1 4 4 H 1.48500 * 109.46755 * 272.44040 * 3 2 1 5 5 H 1.48496 * 109.47460 * 32.44259 * 3 2 1 6 6 H 1.48503 * 109.47223 * 152.44474 * 3 2 1 7 7 C 1.38817 * 119.99673 * 180.26714 * 2 1 3 8 8 H 1.08000 * 119.99933 * 352.57829 * 7 2 1 9 9 N 1.36929 * 119.99688 * 172.57383 * 7 2 1 10 10 C 1.46510 * 119.99867 * 184.33932 * 9 7 2 11 11 C 1.52997 * 109.47241 * 175.02247 * 10 9 7 12 12 N 1.46502 * 110.01777 * 304.31853 * 11 10 9 13 13 C 1.34773 * 119.99999 * 296.97113 * 12 11 10 14 14 O 1.21615 * 120.00031 * 5.03483 * 13 12 11 15 15 C 1.47104 * 120.00133 * 185.03636 * 13 12 11 16 16 C 1.32989 * 120.00121 * 184.42794 * 15 13 12 17 17 C 1.51405 * 136.31727 * 4.39705 * 16 15 13 18 18 C 1.53378 * 87.52000 * 206.06304 * 17 16 15 19 19 C 1.51407 * 136.31736 * 184.77834 * 16 15 13 20 20 C 1.54257 * 110.03366 * 182.87601 * 11 10 9 21 21 C 1.54889 * 104.19988 * 217.10381 * 20 11 10 22 22 C 1.54892 * 102.74576 * 37.94363 * 21 20 11 23 23 C 1.53881 * 110.03125 * 65.70895 * 11 10 9 24 24 H 0.96999 * 119.99664 * 359.73246 * 1 2 3 25 25 H 0.97000 * 120.00822 * 4.34377 * 9 7 2 26 26 H 1.09002 * 109.47156 * 295.02073 * 10 9 7 27 27 H 1.09001 * 109.46745 * 55.02045 * 10 9 7 28 28 H 0.97003 * 120.00335 * 116.96267 * 12 11 10 29 29 H 1.08002 * 120.00031 * 4.42187 * 15 13 12 30 30 H 1.09005 * 113.55899 * 320.64397 * 17 16 15 31 31 H 1.08992 * 113.56371 * 91.37518 * 17 16 15 32 32 H 1.08997 * 113.96719 * 220.29325 * 18 17 16 33 33 H 1.08994 * 113.60116 * 88.79491 * 18 17 16 34 34 H 1.09006 * 113.55660 * 268.62148 * 19 16 15 35 35 H 1.08996 * 113.56078 * 39.34918 * 19 16 15 36 36 H 1.09002 * 110.48871 * 335.78378 * 20 11 10 37 37 H 1.09000 * 110.48808 * 98.42568 * 20 11 10 38 38 H 1.09001 * 110.76119 * 279.63037 * 21 20 11 39 39 H 1.09001 * 110.76128 * 156.25639 * 21 20 11 40 40 H 1.08998 * 110.48468 * 203.37946 * 22 21 20 41 41 H 1.08999 * 110.48788 * 80.73519 * 22 21 20 42 42 H 1.09005 * 110.02743 * 238.56798 * 23 11 10 43 43 H 1.08996 * 110.02999 * 359.97438 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4461 2.0761 -1.3988 5 1 1.4746 2.6372 0.7510 6 1 3.5728 1.4257 0.6477 7 6 2.0103 -1.2022 -0.0056 8 1 1.4770 -2.1341 0.1109 9 7 3.3709 -1.2065 -0.1589 10 6 4.0927 -2.4774 -0.2603 11 6 5.5701 -2.2034 -0.5483 12 7 5.7020 -1.3816 -1.7539 13 6 5.2823 -1.8574 -2.9430 14 8 4.7114 -2.9296 -3.0016 15 6 5.5147 -1.0798 -4.1698 16 6 5.0239 -1.5058 -5.3301 17 6 4.1401 -2.6446 -5.7931 18 6 4.8290 -2.5356 -7.1592 19 6 5.1053 -1.0726 -6.7786 20 6 6.3290 -3.5342 -0.7290 21 6 7.7088 -3.2767 -0.0742 22 6 7.3463 -2.4089 1.1566 23 6 6.2170 -1.4878 0.6507 24 1 -0.4849 0.8401 0.0039 25 1 3.8571 -0.3681 -0.2003 26 1 4.0008 -3.0234 0.6787 27 1 3.6690 -3.0723 -1.0694 28 1 6.0913 -0.4950 -1.6964 29 1 6.0838 -0.1628 -4.1283 30 1 4.3385 -3.5861 -5.2809 31 1 3.0803 -2.3912 -5.8181 32 1 4.1528 -2.6499 -8.0064 33 1 5.7281 -3.1457 -7.2445 34 1 4.3102 -0.3879 -7.0739 35 1 6.0951 -0.7249 -7.0744 36 1 5.8083 -4.3430 -0.2163 37 1 6.4464 -3.7656 -1.7877 38 1 8.3628 -2.7298 -0.7533 39 1 8.1699 -4.2142 0.2366 40 1 8.2063 -1.8191 1.4740 41 1 6.9899 -3.0359 1.9739 42 1 6.6297 -0.5296 0.3352 43 1 5.4782 -1.3355 1.4375 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318624352.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:55:33 Heat of formation + Delta-G solvation = 13.019646 kcal Electronic energy + Delta-G solvation = -22548.362179 eV Core-core repulsion = 19401.715595 eV Total energy + Delta-G solvation = -3146.646584 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.12898 -38.73731 -37.20190 -34.39631 -33.11626 -31.35831 -30.56974 -28.61249 -28.20152 -25.74687 -24.61617 -23.38835 -21.97194 -21.10183 -20.16287 -19.07193 -18.06166 -17.58451 -16.67722 -15.92891 -15.51295 -15.29958 -14.76057 -14.43153 -14.22342 -14.04404 -13.72942 -13.08023 -12.93234 -12.49429 -12.44944 -12.14748 -11.95059 -11.78991 -11.70649 -11.49298 -11.01706 -10.98991 -10.92319 -10.89978 -10.64181 -10.48629 -10.46111 -10.39057 -10.11181 -9.55515 -9.24162 -9.03244 -8.72861 -8.49439 -7.09411 -5.69238 -3.01319 1.56631 3.38644 3.39905 3.45949 3.49051 3.72468 4.42864 4.50817 4.63963 4.65065 4.76540 4.80890 4.99761 5.07535 5.28818 5.44195 5.48481 5.55444 5.56135 5.63705 5.64657 5.67732 5.72445 5.76757 5.83244 5.92898 5.97387 6.02609 6.06973 6.20092 6.23008 6.30082 6.36233 6.41026 6.47864 6.60666 6.71448 6.95964 7.14487 7.95574 8.10694 8.50282 8.71705 9.30837 10.03303 10.25041 11.49772 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.010989 B = 0.007379 C = 0.005058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2547.368478 B = 3793.655045 C = 5534.841473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.001 3.999 3 Si 0.880 3.120 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.278 1.278 7 C -0.233 4.233 8 H 0.088 0.912 9 N -0.749 5.749 10 C 0.150 3.850 11 C 0.167 3.833 12 N -0.713 5.713 13 C 0.556 3.444 14 O -0.530 6.530 15 C -0.196 4.196 16 C -0.067 4.067 17 C -0.106 4.106 18 C -0.142 4.142 19 C -0.108 4.108 20 C -0.121 4.121 21 C -0.124 4.124 22 C -0.121 4.121 23 C -0.127 4.127 24 H 0.257 0.743 25 H 0.357 0.643 26 H 0.026 0.974 27 H 0.055 0.945 28 H 0.393 0.607 29 H 0.127 0.873 30 H 0.089 0.911 31 H 0.099 0.901 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.098 0.902 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.062 0.938 39 H 0.063 0.937 40 H 0.062 0.938 41 H 0.068 0.932 42 H 0.064 0.936 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.928 -3.026 -8.476 20.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.194 4.194 3 Si 0.711 3.289 4 H -0.213 1.213 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.363 4.363 8 H 0.106 0.894 9 N -0.393 5.393 10 C 0.022 3.978 11 C 0.081 3.919 12 N -0.364 5.364 13 C 0.344 3.656 14 O -0.408 6.408 15 C -0.217 4.217 16 C -0.069 4.069 17 C -0.143 4.143 18 C -0.179 4.179 19 C -0.145 4.145 20 C -0.160 4.160 21 C -0.162 4.162 22 C -0.159 4.159 23 C -0.165 4.165 24 H 0.067 0.933 25 H 0.189 0.811 26 H 0.043 0.957 27 H 0.073 0.927 28 H 0.227 0.773 29 H 0.145 0.855 30 H 0.107 0.893 31 H 0.117 0.883 32 H 0.094 0.906 33 H 0.100 0.900 34 H 0.117 0.883 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.086 0.914 42 H 0.083 0.917 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 17.288 -3.903 -8.490 19.652 hybrid contribution 0.690 1.983 0.119 2.103 sum 17.978 -1.919 -8.370 19.924 Atomic orbital electron populations 1.69734 1.05054 1.25516 1.58090 1.24632 0.95152 0.97002 1.02603 0.86570 0.79316 0.85446 0.77582 1.21344 1.21849 1.20449 1.19067 0.81455 0.94787 1.40960 0.89387 1.42522 1.04946 1.02009 1.89871 1.21122 0.88210 0.89672 0.98828 1.21261 0.96630 0.90479 0.83490 1.45951 1.63993 1.19297 1.07127 1.18211 0.78112 0.85924 0.83329 1.90734 1.40383 1.22936 1.86765 1.21642 1.07434 1.01233 0.91369 1.23378 0.93850 0.96133 0.93492 1.22216 0.98807 0.98666 0.94613 1.22710 1.01191 0.96160 0.97851 1.22346 1.02590 0.97719 0.91871 1.22630 0.94771 0.96693 1.01857 1.22512 0.97271 0.99398 0.96979 1.22347 0.97724 0.97911 0.97918 1.22482 0.98099 0.98196 0.97748 0.93280 0.81107 0.95660 0.92714 0.77281 0.85524 0.89262 0.88335 0.90611 0.89980 0.88332 0.90701 0.90662 0.90594 0.91932 0.91798 0.91890 0.91362 0.91719 0.89654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -30.31 13.97 55.49 0.78 -29.54 16 2 C 0.00 0.04 5.50 -17.43 -0.10 -0.06 16 3 Si 0.88 22.59 27.68 -169.99 -4.71 17.88 16 4 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 5 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 6 H -0.28 -6.63 6.63 56.52 0.37 -6.26 16 7 C -0.23 -6.88 10.46 -15.06 -0.16 -7.04 16 8 H 0.09 2.82 8.06 -52.49 -0.42 2.40 16 9 N -0.75 -18.47 4.96 -59.90 -0.30 -18.76 16 10 C 0.15 3.16 4.59 -4.04 -0.02 3.15 16 11 C 0.17 2.71 0.56 -130.70 -0.07 2.64 16 12 N -0.71 -11.14 4.70 -47.74 -0.22 -11.36 16 13 C 0.56 9.57 6.89 -12.67 -0.09 9.48 16 14 O -0.53 -10.72 11.89 5.26 0.06 -10.66 16 15 C -0.20 -2.81 10.03 -37.81 -0.38 -3.19 16 16 C -0.07 -0.91 6.92 -100.48 -0.70 -1.60 16 17 C -0.11 -1.43 7.13 -27.56 -0.20 -1.63 16 18 C -0.14 -1.41 8.17 -26.20 -0.21 -1.63 16 19 C -0.11 -1.10 7.95 -27.40 -0.22 -1.31 16 20 C -0.12 -1.74 5.59 -25.08 -0.14 -1.88 16 21 C -0.12 -1.41 6.91 -24.74 -0.17 -1.58 16 22 C -0.12 -1.39 6.83 -25.07 -0.17 -1.56 16 23 C -0.13 -1.79 5.82 -25.61 -0.15 -1.94 16 24 H 0.26 7.92 8.31 -40.82 -0.34 7.58 16 25 H 0.36 8.45 5.15 -40.82 -0.21 8.24 16 26 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.05 1.31 6.39 -51.93 -0.33 0.98 16 28 H 0.39 5.17 8.06 -40.82 -0.33 4.84 16 29 H 0.13 1.45 8.06 -52.49 -0.42 1.02 16 30 H 0.09 1.35 7.26 -51.93 -0.38 0.97 16 31 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 32 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.07 1.10 7.85 -51.93 -0.41 0.69 16 37 H 0.08 1.19 6.36 -51.93 -0.33 0.86 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.06 0.82 7.45 -51.93 -0.39 0.44 16 43 H 0.08 1.37 7.56 -51.93 -0.39 0.98 16 LS Contribution 339.32 15.07 5.11 5.11 Total: -1.00 -34.39 339.32 -9.04 -43.43 By element: Atomic # 1 Polarization: 19.05 SS G_CDS: -7.00 Total: 12.05 kcal Atomic # 6 Polarization: -5.39 SS G_CDS: -2.77 Total: -8.16 kcal Atomic # 7 Polarization: -59.92 SS G_CDS: 0.25 Total: -59.66 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: 0.06 Total: -10.66 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -4.71 Total: 17.88 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -34.39 -9.04 -43.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318624352.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.454 kcal (2) G-P(sol) polarization free energy of solvation -34.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds