Wall clock time and date at job start Mon Mar 30 2020 23:55:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86796 * 120.00152 * 2 1 4 4 H 1.48500 * 109.46755 * 272.44040 * 3 2 1 5 5 H 1.48496 * 109.47460 * 32.44259 * 3 2 1 6 6 H 1.48503 * 109.47223 * 152.44474 * 3 2 1 7 7 C 1.38817 * 119.99673 * 180.26714 * 2 1 3 8 8 H 1.08000 * 119.99933 * 352.57829 * 7 2 1 9 9 N 1.36929 * 119.99688 * 172.57383 * 7 2 1 10 10 C 1.46510 * 119.99867 * 184.33932 * 9 7 2 11 11 C 1.52997 * 109.47241 * 175.02247 * 10 9 7 12 12 N 1.46502 * 110.01777 * 304.31853 * 11 10 9 13 13 C 1.34773 * 119.99999 * 296.97113 * 12 11 10 14 14 O 1.21615 * 120.00031 * 5.03483 * 13 12 11 15 15 C 1.47104 * 120.00133 * 185.03636 * 13 12 11 16 16 C 1.32989 * 120.00121 * 184.42794 * 15 13 12 17 17 C 1.51405 * 136.31727 * 4.39705 * 16 15 13 18 18 C 1.53378 * 87.52000 * 206.06304 * 17 16 15 19 19 C 1.51407 * 136.31736 * 184.77834 * 16 15 13 20 20 C 1.54257 * 110.03366 * 182.87601 * 11 10 9 21 21 C 1.54889 * 104.19988 * 217.10381 * 20 11 10 22 22 C 1.54892 * 102.74576 * 37.94363 * 21 20 11 23 23 C 1.53881 * 110.03125 * 65.70895 * 11 10 9 24 24 H 0.96999 * 119.99664 * 359.73246 * 1 2 3 25 25 H 0.97000 * 120.00822 * 4.34377 * 9 7 2 26 26 H 1.09002 * 109.47156 * 295.02073 * 10 9 7 27 27 H 1.09001 * 109.46745 * 55.02045 * 10 9 7 28 28 H 0.97003 * 120.00335 * 116.96267 * 12 11 10 29 29 H 1.08002 * 120.00031 * 4.42187 * 15 13 12 30 30 H 1.09005 * 113.55899 * 320.64397 * 17 16 15 31 31 H 1.08992 * 113.56371 * 91.37518 * 17 16 15 32 32 H 1.08997 * 113.96719 * 220.29325 * 18 17 16 33 33 H 1.08994 * 113.60116 * 88.79491 * 18 17 16 34 34 H 1.09006 * 113.55660 * 268.62148 * 19 16 15 35 35 H 1.08996 * 113.56078 * 39.34918 * 19 16 15 36 36 H 1.09002 * 110.48871 * 335.78378 * 20 11 10 37 37 H 1.09000 * 110.48808 * 98.42568 * 20 11 10 38 38 H 1.09001 * 110.76119 * 279.63037 * 21 20 11 39 39 H 1.09001 * 110.76128 * 156.25639 * 21 20 11 40 40 H 1.08998 * 110.48468 * 203.37946 * 22 21 20 41 41 H 1.08999 * 110.48788 * 80.73519 * 22 21 20 42 42 H 1.09005 * 110.02743 * 238.56798 * 23 11 10 43 43 H 1.08996 * 110.02999 * 359.97438 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4461 2.0761 -1.3988 5 1 1.4746 2.6372 0.7510 6 1 3.5728 1.4257 0.6477 7 6 2.0103 -1.2022 -0.0056 8 1 1.4770 -2.1341 0.1109 9 7 3.3709 -1.2065 -0.1589 10 6 4.0927 -2.4774 -0.2603 11 6 5.5701 -2.2034 -0.5483 12 7 5.7020 -1.3816 -1.7539 13 6 5.2823 -1.8574 -2.9430 14 8 4.7114 -2.9296 -3.0016 15 6 5.5147 -1.0798 -4.1698 16 6 5.0239 -1.5058 -5.3301 17 6 4.1401 -2.6446 -5.7931 18 6 4.8290 -2.5356 -7.1592 19 6 5.1053 -1.0726 -6.7786 20 6 6.3290 -3.5342 -0.7290 21 6 7.7088 -3.2767 -0.0742 22 6 7.3463 -2.4089 1.1566 23 6 6.2170 -1.4878 0.6507 24 1 -0.4849 0.8401 0.0039 25 1 3.8571 -0.3681 -0.2003 26 1 4.0008 -3.0234 0.6787 27 1 3.6690 -3.0723 -1.0694 28 1 6.0913 -0.4950 -1.6964 29 1 6.0838 -0.1628 -4.1283 30 1 4.3385 -3.5861 -5.2809 31 1 3.0803 -2.3912 -5.8181 32 1 4.1528 -2.6499 -8.0064 33 1 5.7281 -3.1457 -7.2445 34 1 4.3102 -0.3879 -7.0739 35 1 6.0951 -0.7249 -7.0744 36 1 5.8083 -4.3430 -0.2163 37 1 6.4464 -3.7656 -1.7877 38 1 8.3628 -2.7298 -0.7533 39 1 8.1699 -4.2142 0.2366 40 1 8.2063 -1.8191 1.4740 41 1 6.9899 -3.0359 1.9739 42 1 6.6297 -0.5296 0.3352 43 1 5.4782 -1.3355 1.4375 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318624352.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:55:32 Heat of formation + Delta-G solvation = -10.154972 kcal Electronic energy + Delta-G solvation = -22549.367106 eV Core-core repulsion = 19401.715595 eV Total energy + Delta-G solvation = -3147.651511 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.41995 -39.75953 -38.42640 -36.32121 -34.49523 -33.41156 -31.80479 -29.73227 -29.69560 -26.67994 -26.34445 -24.48260 -23.81458 -22.24717 -21.23371 -20.56394 -19.70986 -19.08346 -17.84442 -17.22065 -16.67014 -16.48446 -16.31201 -15.92896 -15.60342 -15.46289 -15.04243 -14.83730 -14.28346 -14.10015 -13.75907 -13.71757 -13.35786 -12.92471 -12.88891 -12.75877 -12.59310 -12.33127 -12.15450 -11.98510 -11.96044 -11.87127 -11.81789 -11.68170 -11.41816 -11.40630 -11.02977 -10.45986 -10.17649 -9.80831 -9.28519 -8.05498 -5.37516 0.44648 1.30949 1.37431 1.45291 2.26707 2.45875 2.46592 3.23660 3.41139 3.45875 3.60271 3.68908 3.79920 3.84136 4.01965 4.21211 4.26663 4.38113 4.50629 4.51494 4.62346 4.66620 4.73221 4.78765 4.84192 4.87435 4.91910 4.95172 5.03113 5.06203 5.10305 5.19758 5.23685 5.27951 5.34633 5.35741 5.47698 5.69468 5.70899 5.80290 6.17744 6.74240 7.05177 7.45033 7.79767 8.04836 9.16738 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.010989 B = 0.007379 C = 0.005058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2547.368478 B = 3793.655045 C = 5534.841473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.985 5.985 2 C -0.066 4.066 3 Si 0.958 3.042 4 H -0.277 1.277 5 H -0.292 1.292 6 H -0.244 1.244 7 C -0.236 4.236 8 H 0.042 0.958 9 N -0.742 5.742 10 C 0.150 3.850 11 C 0.171 3.829 12 N -0.705 5.705 13 C 0.543 3.457 14 O -0.574 6.574 15 C -0.212 4.212 16 C -0.077 4.077 17 C -0.126 4.126 18 C -0.126 4.126 19 C -0.093 4.093 20 C -0.119 4.119 21 C -0.111 4.111 22 C -0.113 4.113 23 C -0.126 4.126 24 H 0.258 0.742 25 H 0.366 0.634 26 H 0.021 0.979 27 H 0.018 0.982 28 H 0.409 0.591 29 H 0.161 0.839 30 H 0.060 0.940 31 H 0.086 0.914 32 H 0.094 0.906 33 H 0.090 0.910 34 H 0.110 0.890 35 H 0.100 0.900 36 H 0.063 0.937 37 H 0.059 0.941 38 H 0.075 0.925 39 H 0.081 0.919 40 H 0.090 0.910 41 H 0.068 0.932 42 H 0.087 0.913 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.687 -0.683 -9.240 23.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.257 4.257 3 Si 0.784 3.216 4 H -0.203 1.203 5 H -0.219 1.219 6 H -0.168 1.168 7 C -0.367 4.367 8 H 0.060 0.940 9 N -0.387 5.387 10 C 0.023 3.977 11 C 0.085 3.915 12 N -0.357 5.357 13 C 0.333 3.667 14 O -0.455 6.455 15 C -0.232 4.232 16 C -0.079 4.079 17 C -0.163 4.163 18 C -0.163 4.163 19 C -0.130 4.130 20 C -0.158 4.158 21 C -0.149 4.149 22 C -0.151 4.151 23 C -0.164 4.164 24 H 0.067 0.933 25 H 0.200 0.800 26 H 0.039 0.961 27 H 0.036 0.964 28 H 0.245 0.755 29 H 0.179 0.821 30 H 0.079 0.921 31 H 0.105 0.895 32 H 0.112 0.888 33 H 0.109 0.891 34 H 0.128 0.872 35 H 0.119 0.881 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.094 0.906 39 H 0.100 0.900 40 H 0.109 0.891 41 H 0.086 0.914 42 H 0.105 0.895 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 21.108 -1.559 -9.246 23.097 hybrid contribution -0.626 1.079 0.344 1.294 sum 20.482 -0.480 -8.902 22.338 Atomic orbital electron populations 1.69939 1.07345 1.26742 1.59516 1.25573 0.96175 1.01526 1.02444 0.85349 0.79087 0.79039 0.78145 1.20334 1.21904 1.16836 1.18980 0.83638 0.93350 1.40705 0.93958 1.42353 1.03202 1.03613 1.89543 1.21165 0.91586 0.87825 0.97142 1.21177 0.93111 0.92253 0.84991 1.45903 1.63460 1.19889 1.06443 1.18881 0.77400 0.85732 0.84671 1.90724 1.42346 1.24946 1.87457 1.21810 1.08971 1.02354 0.90096 1.23898 0.92749 0.95912 0.95327 1.22327 0.98752 0.97735 0.97503 1.22690 1.01251 0.96429 0.95971 1.22358 1.04400 0.97736 0.88468 1.22571 0.96738 0.95353 1.01115 1.22467 0.95084 1.00533 0.96803 1.22329 0.97506 0.97568 0.97673 1.22475 0.98421 0.99690 0.95786 0.93334 0.80031 0.96119 0.96405 0.75475 0.82124 0.92126 0.89529 0.88760 0.89123 0.87186 0.88129 0.91779 0.92252 0.90621 0.90043 0.89100 0.91361 0.89468 0.91787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -65.91 13.97 21.65 0.30 -65.60 16 2 C -0.07 -4.08 5.50 84.86 0.47 -3.62 16 3 Si 0.96 46.29 27.68 68.60 1.90 48.19 16 4 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 5 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 6 H -0.24 -10.35 6.63 99.48 0.66 -9.69 16 7 C -0.24 -14.52 10.46 84.04 0.88 -13.64 16 8 H 0.04 2.92 8.06 -2.91 -0.02 2.90 16 9 N -0.74 -37.16 4.96 -343.43 -1.70 -38.86 16 10 C 0.15 6.63 4.59 86.38 0.40 7.02 16 11 C 0.17 5.46 0.56 4.33 0.00 5.46 16 12 N -0.71 -21.20 4.70 -423.20 -1.99 -23.19 16 13 C 0.54 18.79 6.89 86.57 0.60 19.39 16 14 O -0.57 -24.54 11.89 -4.08 -0.05 -24.59 16 15 C -0.21 -5.79 10.03 23.43 0.23 -5.56 16 16 C -0.08 -2.01 6.92 -17.17 -0.12 -2.13 16 17 C -0.13 -3.49 7.13 30.06 0.21 -3.28 16 18 C -0.13 -2.28 8.17 30.94 0.25 -2.03 16 19 C -0.09 -1.60 7.95 30.16 0.24 -1.36 16 20 C -0.12 -3.40 5.59 31.67 0.18 -3.22 16 21 C -0.11 -2.21 6.91 31.89 0.22 -1.99 16 22 C -0.11 -2.19 6.83 31.67 0.22 -1.98 16 23 C -0.13 -3.23 5.82 31.32 0.18 -3.04 16 24 H 0.26 16.29 8.31 -92.71 -0.77 15.52 16 25 H 0.37 16.85 5.15 -92.71 -0.48 16.37 16 26 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.02 0.92 6.39 -2.39 -0.02 0.91 16 28 H 0.41 9.56 8.06 -92.71 -0.75 8.81 16 29 H 0.16 3.14 8.06 -2.91 -0.02 3.12 16 30 H 0.06 1.99 7.26 -2.38 -0.02 1.97 16 31 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 32 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.11 1.71 8.14 -2.38 -0.02 1.69 16 35 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.06 1.93 7.85 -2.39 -0.02 1.91 16 37 H 0.06 1.90 6.36 -2.39 -0.02 1.88 16 38 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.09 1.85 7.45 -2.38 -0.02 1.83 16 43 H 0.06 1.94 7.56 -2.39 -0.02 1.93 16 Total: -1.00 -79.92 339.32 2.15 -77.76 By element: Atomic # 1 Polarization: 36.53 SS G_CDS: -0.27 Total: 36.27 kcal Atomic # 6 Polarization: -13.93 SS G_CDS: 3.96 Total: -9.97 kcal Atomic # 7 Polarization: -124.26 SS G_CDS: -3.39 Total: -127.65 kcal Atomic # 8 Polarization: -24.54 SS G_CDS: -0.05 Total: -24.59 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 1.90 Total: 48.19 kcal Total: -79.92 2.15 -77.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318624352.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.608 kcal (2) G-P(sol) polarization free energy of solvation -79.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds