Wall clock time and date at job start Tue Mar 31 2020 00:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86793 * 120.00149 * 2 1 4 4 H 1.48504 * 109.47075 * 240.00105 * 3 2 1 5 5 H 1.48499 * 109.47265 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47105 * 120.00617 * 3 2 1 7 7 C 1.38815 * 119.99664 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99738 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99831 * 359.97438 * 7 2 1 10 10 C 1.46508 * 119.99594 * 180.02562 * 9 7 2 11 11 C 1.50704 * 109.46641 * 180.02562 * 10 9 7 12 12 C 1.31002 * 119.99819 * 127.01152 * 11 10 9 13 13 C 1.50706 * 120.00160 * 7.54703 * 12 11 10 14 14 N 1.46501 * 109.46725 * 127.16033 * 13 12 11 15 15 C 1.34779 * 119.99719 * 179.97438 * 14 13 12 16 16 O 1.21281 * 119.99707 * 0.02562 * 15 14 13 17 17 C 1.50704 * 119.99676 * 179.97438 * 15 14 13 18 18 H 1.09000 * 109.26112 * 60.50100 * 17 15 14 19 19 C 1.52867 * 109.23882 * 301.01594 * 17 15 14 20 20 C 1.58267 * 107.10092 * 183.59071 * 19 17 15 21 21 C 1.52879 * 106.19620 * 76.81206 * 20 19 17 22 22 C 1.52705 * 110.15562 * 303.09621 * 21 20 19 23 23 H 1.09003 * 115.38595 * 232.83448 * 22 21 20 24 24 C 1.53646 * 116.03425 * 90.20304 * 22 21 20 25 25 C 1.49178 * 60.26653 * 248.70855 * 24 22 21 26 26 H 1.09008 * 116.23320 * 253.37712 * 25 24 22 27 27 H 0.96999 * 119.99653 * 359.97438 * 1 2 3 28 28 H 0.96997 * 120.00732 * 0.02562 * 9 7 2 29 29 H 1.08990 * 109.47277 * 60.00173 * 10 9 7 30 30 H 1.08993 * 109.47049 * 299.99606 * 10 9 7 31 31 H 1.08000 * 119.99911 * 307.00194 * 11 10 9 32 32 H 1.08000 * 119.99500 * 187.56183 * 12 11 10 33 33 H 1.09001 * 109.46865 * 7.16793 * 13 12 11 34 34 H 1.08999 * 109.47284 * 247.16270 * 13 12 11 35 35 H 0.97006 * 119.99890 * 0.02562 * 14 13 12 36 36 H 1.09003 * 109.61774 * 304.59522 * 19 17 15 37 37 H 1.08995 * 109.62101 * 64.95424 * 19 17 15 38 38 H 1.08990 * 112.77859 * 316.73265 * 20 19 17 39 39 H 1.08997 * 108.77564 * 194.71844 * 20 19 17 40 40 H 1.08998 * 109.35961 * 182.88222 * 21 20 19 41 41 H 1.09006 * 109.35860 * 63.30630 * 21 20 19 42 42 H 1.08996 * 117.53952 * 355.68955 * 24 22 21 43 43 H 1.08999 * 117.54039 * 140.93945 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1041 1.6962 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6569 -0.0005 11 6 1.0785 -4.8022 -0.0012 12 6 1.1723 -5.7437 -0.9073 13 6 2.3546 -5.7756 -1.8413 14 7 2.9761 -7.1014 -1.7970 15 6 4.0579 -7.3642 -2.5568 16 8 4.5170 -6.5029 -3.2768 17 6 4.6977 -8.7280 -2.5108 18 1 3.9712 -9.4768 -2.8266 19 6 5.1416 -9.0281 -1.0791 20 6 5.8870 -10.4240 -1.1059 21 6 7.2749 -10.1552 -1.6879 22 6 7.1515 -9.5087 -3.0658 23 1 7.7046 -10.0024 -3.8649 24 6 7.1055 -7.9731 -3.0887 25 6 5.8892 -8.7552 -3.4552 26 1 5.6298 -8.7748 -4.5137 27 1 -0.4849 0.8401 0.0004 28 1 0.3555 -2.3881 -0.0005 29 1 2.6846 -3.7146 0.8894 30 1 2.6845 -3.7146 -0.8905 31 1 0.2995 -4.8470 0.7455 32 1 0.4021 -6.4968 -0.9851 33 1 3.0810 -5.0234 -1.5337 34 1 2.0208 -5.5644 -2.8573 35 1 2.6087 -7.7904 -1.2214 36 1 5.7982 -8.2331 -0.7253 37 1 4.2675 -9.0961 -0.4316 38 1 5.3718 -11.1658 -1.7160 39 1 5.9833 -10.7899 -0.0838 40 1 7.8175 -11.0962 -1.7776 41 1 7.8222 -9.4869 -1.0230 42 1 7.0906 -7.4551 -2.1298 43 1 7.6409 -7.4647 -3.8905 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321127651.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:27:17 Heat of formation + Delta-G solvation = 9.235691 kcal Electronic energy + Delta-G solvation = -21133.042510 eV Core-core repulsion = 17986.231842 eV Total energy + Delta-G solvation = -3146.810668 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.70397 -38.60598 -36.48722 -34.52746 -33.38731 -32.63741 -31.46163 -30.31029 -26.70227 -25.33525 -24.61764 -22.97047 -22.47453 -21.82668 -20.38997 -19.08439 -18.36769 -17.21381 -16.70793 -16.50806 -16.18326 -15.28246 -14.91720 -14.41401 -14.29194 -14.05399 -13.61647 -13.48808 -13.45753 -13.22835 -13.00104 -12.62026 -12.53727 -12.14941 -11.72774 -11.67788 -11.38699 -11.10709 -10.94974 -10.77647 -10.68177 -10.42624 -10.37541 -10.05340 -9.95847 -9.77700 -9.60236 -9.10592 -8.99901 -8.57979 -6.91471 -5.76117 -3.05328 2.26802 2.68539 3.23938 3.46316 3.50115 3.51731 3.75363 4.25857 4.34419 4.51234 4.62406 4.65757 4.87347 4.88484 4.99686 5.04363 5.12227 5.17765 5.26713 5.29252 5.35804 5.56928 5.59353 5.68632 5.70705 5.73593 5.80492 5.87889 5.91313 5.94702 5.98205 6.05748 6.08345 6.26890 6.37264 6.55110 6.60373 6.88258 7.15389 7.54856 7.70544 8.28276 8.42468 9.53682 10.09541 10.45023 11.46676 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.025959 B = 0.002940 C = 0.002793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.381907 B = 9520.684761 C =10023.983345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.013 4.013 3 Si 0.909 3.091 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.242 4.242 8 H 0.071 0.929 9 N -0.728 5.728 10 C 0.162 3.838 11 C -0.110 4.110 12 C -0.199 4.199 13 C 0.140 3.860 14 N -0.725 5.725 15 C 0.511 3.489 16 O -0.532 6.532 17 C -0.076 4.076 18 H 0.098 0.902 19 C -0.115 4.115 20 C -0.116 4.116 21 C -0.092 4.092 22 C -0.156 4.156 23 H 0.103 0.897 24 C -0.161 4.161 25 C -0.116 4.116 26 H 0.101 0.899 27 H 0.256 0.744 28 H 0.385 0.615 29 H 0.028 0.972 30 H 0.036 0.964 31 H 0.113 0.887 32 H 0.111 0.889 33 H 0.088 0.912 34 H 0.070 0.930 35 H 0.397 0.603 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.072 0.928 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.065 0.935 42 H 0.093 0.907 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.031 -25.278 -2.890 27.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.209 4.209 3 Si 0.740 3.260 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.373 4.373 8 H 0.089 0.911 9 N -0.372 5.372 10 C 0.035 3.965 11 C -0.129 4.129 12 C -0.218 4.218 13 C 0.018 3.982 14 N -0.377 5.377 15 C 0.296 3.704 16 O -0.407 6.407 17 C -0.097 4.097 18 H 0.116 0.884 19 C -0.153 4.153 20 C -0.153 4.153 21 C -0.129 4.129 22 C -0.174 4.174 23 H 0.121 0.879 24 C -0.198 4.198 25 C -0.134 4.134 26 H 0.119 0.881 27 H 0.066 0.934 28 H 0.218 0.782 29 H 0.045 0.955 30 H 0.053 0.947 31 H 0.131 0.869 32 H 0.129 0.871 33 H 0.106 0.894 34 H 0.088 0.912 35 H 0.231 0.769 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.111 0.889 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 10.500 -24.479 -3.426 26.856 hybrid contribution -0.279 0.691 0.200 0.771 sum 10.221 -23.788 -3.226 26.091 Atomic orbital electron populations 1.69659 1.05145 1.25843 1.57581 1.24759 0.95564 0.97756 1.02853 0.86231 0.78513 0.83308 0.77938 1.21141 1.21635 1.21204 1.19207 0.91072 0.84007 1.42980 0.91118 1.42263 1.05889 0.99497 1.89538 1.20006 0.92988 0.84766 0.98720 1.23291 0.99084 0.94763 0.95785 1.22598 0.98841 1.02060 0.98334 1.20548 0.93996 0.84205 0.99435 1.46073 1.30777 1.15214 1.45599 1.20621 0.80083 0.89900 0.79754 1.90726 1.62413 1.47877 1.39717 1.20675 0.97183 0.94942 0.96910 0.88362 1.22522 1.00972 0.97764 0.94052 1.22423 0.96076 0.95971 1.00844 1.21078 0.97203 1.00312 0.94308 1.22279 1.01437 0.94870 0.98814 0.87863 1.22518 1.01150 0.92739 1.03394 1.20884 0.88949 1.04299 0.99313 0.88073 0.93418 0.78167 0.95478 0.94673 0.86925 0.87117 0.89411 0.91222 0.76894 0.90729 0.91160 0.90918 0.91630 0.91702 0.91599 0.88898 0.89005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.72 13.06 55.49 0.72 -28.00 16 2 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 3 Si 0.91 22.86 29.55 -169.99 -5.02 17.83 16 4 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 6 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 7 C -0.24 -6.96 9.99 -15.06 -0.15 -7.11 16 8 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 9 N -0.73 -18.99 5.59 -61.08 -0.34 -19.33 16 10 C 0.16 3.34 6.35 -5.19 -0.03 3.31 16 11 C -0.11 -1.79 9.63 -36.02 -0.35 -2.14 16 12 C -0.20 -2.72 9.63 -36.02 -0.35 -3.07 16 13 C 0.14 2.03 5.76 -5.19 -0.03 2.00 16 14 N -0.72 -8.35 5.44 -61.47 -0.33 -8.68 16 15 C 0.51 6.54 7.08 -10.98 -0.08 6.46 16 16 O -0.53 -9.18 15.60 5.56 0.09 -9.10 16 17 C -0.08 -0.69 2.56 -92.31 -0.24 -0.93 16 18 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 19 C -0.12 -0.87 4.98 -23.90 -0.12 -0.99 16 20 C -0.12 -0.71 6.16 -23.89 -0.15 -0.86 16 21 C -0.09 -0.62 5.76 -26.94 -0.16 -0.78 16 22 C -0.16 -1.26 6.29 -90.91 -0.57 -1.83 16 23 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 24 C -0.16 -1.67 8.86 -28.28 -0.25 -1.92 16 25 C -0.12 -1.14 4.67 -93.45 -0.44 -1.57 16 26 H 0.10 1.03 8.14 -51.92 -0.42 0.61 16 27 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 28 H 0.38 10.48 7.66 -40.82 -0.31 10.16 16 29 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.04 0.75 5.29 -51.93 -0.27 0.47 16 31 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 32 H 0.11 1.25 8.06 -52.49 -0.42 0.82 16 33 H 0.09 1.49 5.30 -51.93 -0.28 1.21 16 34 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.40 3.35 7.90 -40.82 -0.32 3.03 16 36 H 0.07 0.67 6.94 -51.93 -0.36 0.31 16 37 H 0.07 0.44 7.64 -51.93 -0.40 0.04 16 38 H 0.07 0.41 8.12 -51.93 -0.42 -0.01 16 39 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.07 0.47 8.06 -51.93 -0.42 0.05 16 42 H 0.09 1.04 7.03 -51.93 -0.37 0.67 16 43 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 345.11 15.07 5.20 5.20 Total: -1.00 -33.21 345.11 -9.61 -42.82 By element: Atomic # 1 Polarization: 16.08 SS G_CDS: -6.92 Total: 9.16 kcal Atomic # 6 Polarization: -6.91 SS G_CDS: -3.00 Total: -9.91 kcal Atomic # 7 Polarization: -56.06 SS G_CDS: 0.05 Total: -56.01 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: 0.09 Total: -9.10 kcal Atomic # 14 Polarization: 22.86 SS G_CDS: -5.02 Total: 17.83 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.21 -9.61 -42.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321127651.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.056 kcal (2) G-P(sol) polarization free energy of solvation -33.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds