Wall clock time and date at job start Tue Mar 31 2020 00:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86793 * 120.00149 * 2 1 4 4 H 1.48504 * 109.47075 * 240.00105 * 3 2 1 5 5 H 1.48499 * 109.47265 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47105 * 120.00617 * 3 2 1 7 7 C 1.38815 * 119.99664 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99738 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99831 * 359.97438 * 7 2 1 10 10 C 1.46508 * 119.99594 * 180.02562 * 9 7 2 11 11 C 1.50704 * 109.46641 * 180.02562 * 10 9 7 12 12 C 1.31002 * 119.99819 * 127.01152 * 11 10 9 13 13 C 1.50706 * 120.00160 * 7.54703 * 12 11 10 14 14 N 1.46501 * 109.46725 * 127.16033 * 13 12 11 15 15 C 1.34779 * 119.99719 * 179.97438 * 14 13 12 16 16 O 1.21281 * 119.99707 * 0.02562 * 15 14 13 17 17 C 1.50704 * 119.99676 * 179.97438 * 15 14 13 18 18 H 1.09000 * 109.26112 * 60.50100 * 17 15 14 19 19 C 1.52867 * 109.23882 * 301.01594 * 17 15 14 20 20 C 1.58267 * 107.10092 * 183.59071 * 19 17 15 21 21 C 1.52879 * 106.19620 * 76.81206 * 20 19 17 22 22 C 1.52705 * 110.15562 * 303.09621 * 21 20 19 23 23 H 1.09003 * 115.38595 * 232.83448 * 22 21 20 24 24 C 1.53646 * 116.03425 * 90.20304 * 22 21 20 25 25 C 1.49178 * 60.26653 * 248.70855 * 24 22 21 26 26 H 1.09008 * 116.23320 * 253.37712 * 25 24 22 27 27 H 0.96999 * 119.99653 * 359.97438 * 1 2 3 28 28 H 0.96997 * 120.00732 * 0.02562 * 9 7 2 29 29 H 1.08990 * 109.47277 * 60.00173 * 10 9 7 30 30 H 1.08993 * 109.47049 * 299.99606 * 10 9 7 31 31 H 1.08000 * 119.99911 * 307.00194 * 11 10 9 32 32 H 1.08000 * 119.99500 * 187.56183 * 12 11 10 33 33 H 1.09001 * 109.46865 * 7.16793 * 13 12 11 34 34 H 1.08999 * 109.47284 * 247.16270 * 13 12 11 35 35 H 0.97006 * 119.99890 * 0.02562 * 14 13 12 36 36 H 1.09003 * 109.61774 * 304.59522 * 19 17 15 37 37 H 1.08995 * 109.62101 * 64.95424 * 19 17 15 38 38 H 1.08990 * 112.77859 * 316.73265 * 20 19 17 39 39 H 1.08997 * 108.77564 * 194.71844 * 20 19 17 40 40 H 1.08998 * 109.35961 * 182.88222 * 21 20 19 41 41 H 1.09006 * 109.35860 * 63.30630 * 21 20 19 42 42 H 1.08996 * 117.53952 * 355.68955 * 24 22 21 43 43 H 1.08999 * 117.54039 * 140.93945 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1041 1.6962 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6569 -0.0005 11 6 1.0785 -4.8022 -0.0012 12 6 1.1723 -5.7437 -0.9073 13 6 2.3546 -5.7756 -1.8413 14 7 2.9761 -7.1014 -1.7970 15 6 4.0579 -7.3642 -2.5568 16 8 4.5170 -6.5029 -3.2768 17 6 4.6977 -8.7280 -2.5108 18 1 3.9712 -9.4768 -2.8266 19 6 5.1416 -9.0281 -1.0791 20 6 5.8870 -10.4240 -1.1059 21 6 7.2749 -10.1552 -1.6879 22 6 7.1515 -9.5087 -3.0658 23 1 7.7046 -10.0024 -3.8649 24 6 7.1055 -7.9731 -3.0887 25 6 5.8892 -8.7552 -3.4552 26 1 5.6298 -8.7748 -4.5137 27 1 -0.4849 0.8401 0.0004 28 1 0.3555 -2.3881 -0.0005 29 1 2.6846 -3.7146 0.8894 30 1 2.6845 -3.7146 -0.8905 31 1 0.2995 -4.8470 0.7455 32 1 0.4021 -6.4968 -0.9851 33 1 3.0810 -5.0234 -1.5337 34 1 2.0208 -5.5644 -2.8573 35 1 2.6087 -7.7904 -1.2214 36 1 5.7982 -8.2331 -0.7253 37 1 4.2675 -9.0961 -0.4316 38 1 5.3718 -11.1658 -1.7160 39 1 5.9833 -10.7899 -0.0838 40 1 7.8175 -11.0962 -1.7776 41 1 7.8222 -9.4869 -1.0230 42 1 7.0906 -7.4551 -2.1298 43 1 7.6409 -7.4647 -3.8905 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321127651.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:27:15 Heat of formation + Delta-G solvation = -12.405260 kcal Electronic energy + Delta-G solvation = -21133.980932 eV Core-core repulsion = 17986.231842 eV Total energy + Delta-G solvation = -3147.749090 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.56639 -39.54081 -37.91272 -36.10248 -34.61412 -33.67740 -32.54312 -31.86452 -28.12536 -26.66145 -25.66706 -24.41613 -23.58136 -22.68356 -21.33002 -20.22799 -19.43523 -18.87080 -17.79483 -17.53533 -17.32042 -16.55231 -16.29347 -15.84523 -15.41101 -15.10976 -14.96124 -14.77351 -14.45769 -14.24824 -14.14549 -13.97097 -13.60247 -13.29746 -12.96487 -12.88634 -12.72203 -12.31131 -12.23650 -12.10483 -11.92260 -11.72999 -11.67491 -11.33044 -11.15992 -11.02904 -10.67470 -10.56851 -10.24575 -9.91225 -9.01826 -7.99688 -5.29408 1.04265 1.44900 1.48388 1.54709 1.67123 2.28176 2.54452 2.95150 3.33483 3.55362 3.69037 3.78463 3.85846 3.99900 4.11277 4.15519 4.16962 4.23909 4.31541 4.33849 4.53056 4.56150 4.60781 4.65524 4.70880 4.86347 4.88824 4.89855 5.06620 5.08551 5.12624 5.19798 5.27724 5.33395 5.35892 5.41409 5.43466 5.52043 5.57057 5.85361 6.23061 6.60880 7.28892 7.30825 8.02427 8.27606 9.23558 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.025959 B = 0.002940 C = 0.002793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.381907 B = 9520.684761 C =10023.983345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.073 4.073 3 Si 0.976 3.024 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.275 1.275 7 C -0.254 4.254 8 H 0.072 0.928 9 N -0.741 5.741 10 C 0.161 3.839 11 C -0.135 4.135 12 C -0.157 4.157 13 C 0.141 3.859 14 N -0.709 5.709 15 C 0.506 3.494 16 O -0.584 6.584 17 C -0.066 4.066 18 H 0.127 0.873 19 C -0.115 4.115 20 C -0.109 4.109 21 C -0.095 4.095 22 C -0.129 4.129 23 H 0.115 0.885 24 C -0.185 4.185 25 C -0.127 4.127 26 H 0.093 0.907 27 H 0.254 0.746 28 H 0.376 0.624 29 H 0.024 0.976 30 H 0.030 0.970 31 H 0.126 0.874 32 H 0.152 0.848 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.417 0.583 36 H 0.054 0.946 37 H 0.089 0.911 38 H 0.086 0.914 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.059 0.941 42 H 0.078 0.922 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.158 -27.961 -2.442 29.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.265 4.265 3 Si 0.804 3.196 4 H -0.206 1.206 5 H -0.216 1.216 6 H -0.201 1.201 7 C -0.385 4.385 8 H 0.090 0.910 9 N -0.384 5.384 10 C 0.036 3.964 11 C -0.155 4.155 12 C -0.176 4.176 13 C 0.017 3.983 14 N -0.362 5.362 15 C 0.294 3.706 16 O -0.463 6.463 17 C -0.087 4.087 18 H 0.145 0.855 19 C -0.153 4.153 20 C -0.146 4.146 21 C -0.132 4.132 22 C -0.147 4.147 23 H 0.133 0.867 24 C -0.222 4.222 25 C -0.146 4.146 26 H 0.111 0.889 27 H 0.062 0.938 28 H 0.208 0.792 29 H 0.042 0.958 30 H 0.047 0.953 31 H 0.144 0.856 32 H 0.169 0.831 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.254 0.746 36 H 0.073 0.927 37 H 0.107 0.893 38 H 0.105 0.895 39 H 0.098 0.902 40 H 0.101 0.899 41 H 0.078 0.922 42 H 0.096 0.904 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 10.643 -27.227 -2.946 29.381 hybrid contribution -0.252 1.442 0.000 1.463 sum 10.391 -25.785 -2.946 27.956 Atomic orbital electron populations 1.69808 1.06568 1.26384 1.59015 1.25606 0.96506 1.01175 1.03248 0.85184 0.77272 0.78908 0.78238 1.20580 1.21626 1.20129 1.19598 0.91447 0.85426 1.42063 0.90981 1.42466 1.05686 1.00759 1.89488 1.20070 0.93785 0.84502 0.98067 1.23036 0.99496 0.94573 0.98365 1.22799 0.98206 1.01282 0.95339 1.20328 0.93866 0.85166 0.98916 1.45872 1.30327 1.14454 1.45571 1.21406 0.79679 0.90906 0.78622 1.90707 1.63838 1.49826 1.41967 1.20712 0.97154 0.92844 0.98003 0.85536 1.22556 1.01572 0.98268 0.92928 1.22426 0.95165 0.95029 1.01966 1.21157 0.98122 1.00829 0.93131 1.22400 0.99394 0.92841 1.00046 0.86659 1.22473 1.02607 0.94726 1.02421 1.20968 0.89532 1.04887 0.99199 0.88921 0.93761 0.79199 0.95845 0.95253 0.85649 0.83058 0.92388 0.92354 0.74587 0.92747 0.89291 0.89525 0.90187 0.89872 0.92224 0.90361 0.90092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.43 13.06 21.65 0.28 -60.15 16 2 C -0.07 -4.32 5.50 84.86 0.47 -3.85 16 3 Si 0.98 47.43 29.55 68.60 2.03 49.46 16 4 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 5 H -0.29 -13.99 7.11 99.48 0.71 -13.29 16 6 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 7 C -0.25 -14.85 9.99 84.03 0.84 -14.01 16 8 H 0.07 4.09 7.83 -2.91 -0.02 4.07 16 9 N -0.74 -39.47 5.59 -347.17 -1.94 -41.41 16 10 C 0.16 6.78 6.35 85.63 0.54 7.32 16 11 C -0.14 -4.28 9.63 25.65 0.25 -4.03 16 12 C -0.16 -3.94 9.63 25.65 0.25 -3.69 16 13 C 0.14 3.99 5.76 85.63 0.49 4.48 16 14 N -0.71 -15.22 5.44 -466.77 -2.54 -17.76 16 15 C 0.51 12.70 7.08 87.66 0.62 13.32 16 16 O -0.58 -20.89 15.60 -3.03 -0.05 -20.94 16 17 C -0.07 -1.09 2.56 -11.89 -0.03 -1.12 16 18 H 0.13 1.41 8.14 -2.39 -0.02 1.39 16 19 C -0.12 -1.47 4.98 32.43 0.16 -1.31 16 20 C -0.11 -0.96 6.16 32.43 0.20 -0.76 16 21 C -0.10 -1.05 5.76 30.46 0.18 -0.87 16 22 C -0.13 -1.89 6.29 -10.98 -0.07 -1.96 16 23 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 24 C -0.19 -3.97 8.86 29.59 0.26 -3.71 16 25 C -0.13 -2.41 4.67 -12.63 -0.06 -2.47 16 26 H 0.09 1.89 8.14 -2.38 -0.02 1.87 16 27 H 0.25 15.27 8.31 -92.71 -0.77 14.50 16 28 H 0.38 20.93 7.66 -92.71 -0.71 20.22 16 29 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.03 1.29 5.29 -2.39 -0.01 1.28 16 31 H 0.13 3.67 8.06 -2.91 -0.02 3.65 16 32 H 0.15 2.70 8.06 -2.91 -0.02 2.67 16 33 H 0.06 2.03 5.30 -2.39 -0.01 2.01 16 34 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.42 5.69 7.90 -92.70 -0.73 4.96 16 36 H 0.05 0.93 6.94 -2.39 -0.02 0.92 16 37 H 0.09 0.80 7.64 -2.39 -0.02 0.78 16 38 H 0.09 0.58 8.12 -2.39 -0.02 0.57 16 39 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 40 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 41 H 0.06 0.76 8.06 -2.38 -0.02 0.74 16 42 H 0.08 1.87 7.03 -2.39 -0.02 1.86 16 43 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -74.21 345.11 1.45 -72.77 By element: Atomic # 1 Polarization: 31.13 SS G_CDS: -0.43 Total: 30.70 kcal Atomic # 6 Polarization: -16.76 SS G_CDS: 4.10 Total: -12.67 kcal Atomic # 7 Polarization: -115.12 SS G_CDS: -4.20 Total: -119.32 kcal Atomic # 8 Polarization: -20.89 SS G_CDS: -0.05 Total: -20.94 kcal Atomic # 14 Polarization: 47.43 SS G_CDS: 2.03 Total: 49.46 kcal Total: -74.21 1.45 -72.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321127651.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.363 kcal (2) G-P(sol) polarization free energy of solvation -74.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds