Wall clock time and date at job start Tue Mar 31 2020 00:27:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86795 * 120.00430 * 2 1 4 4 H 1.48507 * 109.47244 * 240.00097 * 3 2 1 5 5 H 1.48496 * 109.47114 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47638 * 119.99902 * 3 2 1 7 7 C 1.38814 * 119.99701 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00022 * 180.02562 * 7 2 1 9 9 N 1.36932 * 119.99980 * 0.02562 * 7 2 1 10 10 C 1.46507 * 119.99923 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.46939 * 180.02562 * 10 9 7 12 12 C 1.31004 * 119.99884 * 125.00125 * 11 10 9 13 13 C 1.50705 * 119.99923 * 179.97438 * 12 11 10 14 14 N 1.46500 * 109.46841 * 124.99826 * 13 12 11 15 15 C 1.34776 * 119.99845 * 179.97438 * 14 13 12 16 16 O 1.21281 * 119.99972 * 0.02562 * 15 14 13 17 17 C 1.50703 * 120.00130 * 180.02562 * 15 14 13 18 18 H 1.09002 * 109.26003 * 60.49586 * 17 15 14 19 19 C 1.52874 * 109.26680 * 301.03435 * 17 15 14 20 20 C 1.58264 * 107.10489 * 183.57049 * 19 17 15 21 21 C 1.52875 * 106.19612 * 76.81049 * 20 19 17 22 22 C 1.52716 * 110.15434 * 303.09500 * 21 20 19 23 23 H 1.09000 * 115.38997 * 232.82454 * 22 21 20 24 24 C 1.53651 * 116.03015 * 90.20431 * 22 21 20 25 25 C 1.49167 * 60.26273 * 248.70725 * 24 22 21 26 26 H 1.09001 * 116.23398 * 253.37385 * 25 24 22 27 27 H 0.97004 * 119.99508 * 0.02562 * 1 2 3 28 28 H 0.96995 * 120.00380 * 0.02562 * 9 7 2 29 29 H 1.09003 * 109.47012 * 60.00588 * 10 9 7 30 30 H 1.09002 * 109.46937 * 300.00271 * 10 9 7 31 31 H 1.07999 * 120.00244 * 304.99820 * 11 10 9 32 32 H 1.07997 * 120.00128 * 0.02562 * 12 11 10 33 33 H 1.08999 * 109.46965 * 5.00021 * 13 12 11 34 34 H 1.08992 * 109.47250 * 245.00341 * 13 12 11 35 35 H 0.97002 * 119.99989 * 0.02562 * 14 13 12 36 36 H 1.09004 * 109.61195 * 304.57463 * 19 17 15 37 37 H 1.08999 * 109.61734 * 64.93023 * 19 17 15 38 38 H 1.09001 * 112.77587 * 316.73874 * 20 19 17 39 39 H 1.08998 * 108.77468 * 194.71843 * 20 19 17 40 40 H 1.09005 * 109.35775 * 182.88432 * 21 20 19 41 41 H 1.09003 * 109.35762 * 63.30229 * 21 20 19 42 42 H 1.09006 * 117.53626 * 355.69780 * 24 22 21 43 43 H 1.09002 * 117.53833 * 140.93205 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1041 1.6963 -1.2126 5 1 1.2854 2.7464 -0.0006 6 1 3.1041 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 2.0579 -3.6569 0.0005 11 6 1.0786 -4.8022 -0.0001 12 6 1.1479 -5.7227 -0.9296 13 6 0.1688 -6.8685 -0.9299 14 7 -0.5074 -6.9325 -2.2279 15 6 -1.4319 -7.8854 -2.4598 16 8 -1.7043 -8.6896 -1.5938 17 6 -2.1272 -7.9517 -3.7952 18 1 -1.3866 -8.1131 -4.5786 19 6 -2.8526 -6.6308 -4.0524 20 6 -3.6380 -6.7891 -5.4172 21 6 -4.8740 -7.6320 -5.1026 22 6 -4.4582 -8.9657 -4.4856 23 1 -4.8669 -9.8524 -4.9702 24 6 -4.3427 -8.9931 -2.9537 25 6 -3.1134 -9.1092 -3.7907 26 1 -2.6549 -10.0969 -3.8390 27 1 -0.4849 0.8401 -0.0004 28 1 0.3555 -2.3880 -0.0002 29 1 2.6845 -3.7146 0.8906 30 1 2.6846 -3.7146 -0.8894 31 1 0.3196 -4.8642 0.7657 32 1 1.9071 -5.6610 -1.6952 33 1 -0.5695 -6.7157 -0.1427 34 1 0.7021 -7.8021 -0.7516 35 1 -0.2893 -6.2895 -2.9207 36 1 -3.5304 -6.4186 -3.2255 37 1 -2.1242 -5.8252 -4.1444 38 1 -3.0468 -7.2808 -6.1898 39 1 -3.9462 -5.8018 -5.7612 40 1 -5.4290 -7.8168 -6.0224 41 1 -5.5104 -7.0923 -4.4013 42 1 -4.4917 -8.0543 -2.4202 43 1 -4.6903 -9.8883 -2.4381 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321127653.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:27:19 Heat of formation + Delta-G solvation = 0.106557 kcal Electronic energy + Delta-G solvation = -20923.682380 eV Core-core repulsion = 17776.475843 eV Total energy + Delta-G solvation = -3147.206537 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.70494 -38.59796 -36.23396 -34.71608 -33.38021 -32.64229 -31.51587 -30.40515 -27.18794 -25.29072 -24.09341 -22.92957 -22.10463 -21.63258 -20.50112 -19.50569 -18.62252 -17.18131 -17.08713 -16.58247 -15.85871 -15.30807 -14.80466 -14.34022 -14.25254 -14.05554 -13.67453 -13.50914 -13.48064 -13.27858 -12.96596 -12.73892 -12.29879 -12.01626 -11.81118 -11.64043 -11.37009 -11.06474 -11.04341 -10.82406 -10.67211 -10.60021 -10.38643 -10.12608 -9.94994 -9.82328 -9.65558 -9.19613 -8.98359 -8.71434 -6.97089 -5.79854 -3.09519 2.27141 2.63464 3.23483 3.42158 3.46452 3.47693 3.74931 4.28543 4.38636 4.54863 4.57745 4.68013 4.87712 4.92077 4.99282 5.02730 5.17529 5.21423 5.24962 5.30768 5.37230 5.53109 5.61749 5.64737 5.72958 5.77498 5.80249 5.86685 5.89220 5.98204 6.00723 6.07650 6.10447 6.12110 6.37354 6.46239 6.55820 6.89411 7.13438 7.50886 7.65775 8.22061 8.38480 9.49705 10.05918 10.41338 11.42791 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.021860 B = 0.002912 C = 0.002661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.560715 B = 9613.430519 C =10521.669096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.013 4.013 3 Si 0.910 3.090 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.243 4.243 8 H 0.071 0.929 9 N -0.730 5.730 10 C 0.172 3.828 11 C -0.107 4.107 12 C -0.201 4.201 13 C 0.155 3.845 14 N -0.725 5.725 15 C 0.514 3.486 16 O -0.539 6.539 17 C -0.076 4.076 18 H 0.099 0.901 19 C -0.117 4.117 20 C -0.116 4.116 21 C -0.092 4.092 22 C -0.154 4.154 23 H 0.103 0.897 24 C -0.162 4.162 25 C -0.115 4.115 26 H 0.100 0.900 27 H 0.256 0.744 28 H 0.385 0.615 29 H 0.031 0.969 30 H 0.025 0.975 31 H 0.109 0.891 32 H 0.114 0.886 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.402 0.598 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.065 0.935 41 H 0.066 0.934 42 H 0.092 0.908 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.905 -18.271 -11.170 22.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.209 4.209 3 Si 0.740 3.260 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.374 4.374 8 H 0.089 0.911 9 N -0.374 5.374 10 C 0.046 3.954 11 C -0.126 4.126 12 C -0.221 4.221 13 C 0.033 3.967 14 N -0.376 5.376 15 C 0.300 3.700 16 O -0.415 6.415 17 C -0.098 4.098 18 H 0.117 0.883 19 C -0.154 4.154 20 C -0.153 4.153 21 C -0.129 4.129 22 C -0.172 4.172 23 H 0.121 0.879 24 C -0.199 4.199 25 C -0.134 4.134 26 H 0.119 0.881 27 H 0.066 0.934 28 H 0.219 0.781 29 H 0.048 0.952 30 H 0.043 0.957 31 H 0.127 0.873 32 H 0.132 0.868 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.237 0.763 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.111 0.889 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -6.971 -18.726 -10.511 22.577 hybrid contribution 0.369 1.192 -0.196 1.263 sum -6.602 -17.534 -10.706 21.579 Atomic orbital electron populations 1.69658 1.05143 1.25864 1.57436 1.24764 0.95560 0.97758 1.02825 0.86235 0.78508 0.83346 0.77890 1.21216 1.21625 1.21191 1.19200 0.91047 0.84034 1.43164 0.91129 1.42290 1.05939 0.99554 1.89610 1.19826 0.92615 0.84586 0.98420 1.23333 0.98270 0.94022 0.97012 1.22700 1.00972 0.97057 1.01343 1.20294 0.93828 0.97481 0.85139 1.46100 1.41273 1.33272 1.17003 1.20647 0.79205 0.80518 0.89621 1.90687 1.63814 1.40362 1.46648 1.20684 0.97530 0.96287 0.95275 0.88270 1.22536 0.99847 0.94947 0.98117 1.22423 0.96888 0.99898 0.96130 1.21087 0.97543 0.93878 1.00433 1.22282 1.00295 0.99210 0.95463 0.87869 1.22514 1.01538 1.03368 0.92486 1.20874 0.89482 0.98597 1.04446 0.88141 0.93390 0.78139 0.95150 0.95692 0.87309 0.86795 0.91349 0.91245 0.76312 0.90751 0.90886 0.90908 0.91443 0.91673 0.91567 0.88916 0.89105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.17 13.06 55.49 0.72 -27.45 16 2 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 3 Si 0.91 22.28 29.55 -169.99 -5.02 17.25 16 4 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.24 -6.83 9.99 -15.06 -0.15 -6.98 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 9 N -0.73 -18.58 5.59 -61.08 -0.34 -18.93 16 10 C 0.17 3.45 6.70 -5.19 -0.03 3.41 16 11 C -0.11 -1.74 9.24 -36.03 -0.33 -2.07 16 12 C -0.20 -2.74 9.24 -36.02 -0.33 -3.07 16 13 C 0.16 1.99 6.11 -5.19 -0.03 1.96 16 14 N -0.72 -8.44 5.44 -61.47 -0.33 -8.77 16 15 C 0.51 6.44 7.08 -10.98 -0.08 6.37 16 16 O -0.54 -8.67 15.60 5.56 0.09 -8.59 16 17 C -0.08 -0.73 2.56 -92.31 -0.24 -0.96 16 18 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 19 C -0.12 -1.03 4.98 -23.90 -0.12 -1.15 16 20 C -0.12 -0.85 6.16 -23.90 -0.15 -1.00 16 21 C -0.09 -0.69 5.76 -26.94 -0.16 -0.85 16 22 C -0.15 -1.28 6.29 -90.91 -0.57 -1.86 16 23 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 24 C -0.16 -1.65 8.86 -28.28 -0.25 -1.90 16 25 C -0.12 -1.13 4.67 -93.46 -0.44 -1.57 16 26 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 28 H 0.39 10.31 7.66 -40.82 -0.31 10.00 16 29 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.03 0.50 7.79 -51.93 -0.40 0.09 16 31 H 0.11 1.75 7.84 -52.49 -0.41 1.34 16 32 H 0.11 1.46 7.84 -52.49 -0.41 1.05 16 33 H 0.07 0.95 7.79 -51.93 -0.40 0.55 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.40 3.97 7.90 -40.82 -0.32 3.65 16 36 H 0.07 0.75 6.94 -51.93 -0.36 0.39 16 37 H 0.07 0.60 7.64 -51.93 -0.40 0.21 16 38 H 0.07 0.49 8.12 -51.93 -0.42 0.07 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.07 0.52 8.06 -51.93 -0.42 0.10 16 42 H 0.09 1.03 7.03 -51.93 -0.37 0.67 16 43 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 349.60 15.07 5.27 5.27 Total: -1.00 -32.07 349.60 -9.75 -41.82 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: -7.16 Total: 9.52 kcal Atomic # 6 Polarization: -7.15 SS G_CDS: -2.97 Total: -10.13 kcal Atomic # 7 Polarization: -55.19 SS G_CDS: 0.05 Total: -55.14 kcal Atomic # 8 Polarization: -8.67 SS G_CDS: 0.09 Total: -8.59 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.07 -9.75 -41.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321127653.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.929 kcal (2) G-P(sol) polarization free energy of solvation -32.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds