Wall clock time and date at job start Tue Mar 31 2020 00:27:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86795 * 120.00430 * 2 1 4 4 H 1.48507 * 109.47244 * 240.00097 * 3 2 1 5 5 H 1.48496 * 109.47114 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47638 * 119.99902 * 3 2 1 7 7 C 1.38814 * 119.99701 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00022 * 180.02562 * 7 2 1 9 9 N 1.36932 * 119.99980 * 0.02562 * 7 2 1 10 10 C 1.46507 * 119.99923 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.46939 * 180.02562 * 10 9 7 12 12 C 1.31004 * 119.99884 * 125.00125 * 11 10 9 13 13 C 1.50705 * 119.99923 * 179.97438 * 12 11 10 14 14 N 1.46500 * 109.46841 * 124.99826 * 13 12 11 15 15 C 1.34776 * 119.99845 * 179.97438 * 14 13 12 16 16 O 1.21281 * 119.99972 * 0.02562 * 15 14 13 17 17 C 1.50703 * 120.00130 * 180.02562 * 15 14 13 18 18 H 1.09002 * 109.26003 * 60.49586 * 17 15 14 19 19 C 1.52874 * 109.26680 * 301.03435 * 17 15 14 20 20 C 1.58264 * 107.10489 * 183.57049 * 19 17 15 21 21 C 1.52875 * 106.19612 * 76.81049 * 20 19 17 22 22 C 1.52716 * 110.15434 * 303.09500 * 21 20 19 23 23 H 1.09000 * 115.38997 * 232.82454 * 22 21 20 24 24 C 1.53651 * 116.03015 * 90.20431 * 22 21 20 25 25 C 1.49167 * 60.26273 * 248.70725 * 24 22 21 26 26 H 1.09001 * 116.23398 * 253.37385 * 25 24 22 27 27 H 0.97004 * 119.99508 * 0.02562 * 1 2 3 28 28 H 0.96995 * 120.00380 * 0.02562 * 9 7 2 29 29 H 1.09003 * 109.47012 * 60.00588 * 10 9 7 30 30 H 1.09002 * 109.46937 * 300.00271 * 10 9 7 31 31 H 1.07999 * 120.00244 * 304.99820 * 11 10 9 32 32 H 1.07997 * 120.00128 * 0.02562 * 12 11 10 33 33 H 1.08999 * 109.46965 * 5.00021 * 13 12 11 34 34 H 1.08992 * 109.47250 * 245.00341 * 13 12 11 35 35 H 0.97002 * 119.99989 * 0.02562 * 14 13 12 36 36 H 1.09004 * 109.61195 * 304.57463 * 19 17 15 37 37 H 1.08999 * 109.61734 * 64.93023 * 19 17 15 38 38 H 1.09001 * 112.77587 * 316.73874 * 20 19 17 39 39 H 1.08998 * 108.77468 * 194.71843 * 20 19 17 40 40 H 1.09005 * 109.35775 * 182.88432 * 21 20 19 41 41 H 1.09003 * 109.35762 * 63.30229 * 21 20 19 42 42 H 1.09006 * 117.53626 * 355.69780 * 24 22 21 43 43 H 1.09002 * 117.53833 * 140.93205 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1041 1.6963 -1.2126 5 1 1.2854 2.7464 -0.0006 6 1 3.1041 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 2.0579 -3.6569 0.0005 11 6 1.0786 -4.8022 -0.0001 12 6 1.1479 -5.7227 -0.9296 13 6 0.1688 -6.8685 -0.9299 14 7 -0.5074 -6.9325 -2.2279 15 6 -1.4319 -7.8854 -2.4598 16 8 -1.7043 -8.6896 -1.5938 17 6 -2.1272 -7.9517 -3.7952 18 1 -1.3866 -8.1131 -4.5786 19 6 -2.8526 -6.6308 -4.0524 20 6 -3.6380 -6.7891 -5.4172 21 6 -4.8740 -7.6320 -5.1026 22 6 -4.4582 -8.9657 -4.4856 23 1 -4.8669 -9.8524 -4.9702 24 6 -4.3427 -8.9931 -2.9537 25 6 -3.1134 -9.1092 -3.7907 26 1 -2.6549 -10.0969 -3.8390 27 1 -0.4849 0.8401 -0.0004 28 1 0.3555 -2.3880 -0.0002 29 1 2.6845 -3.7146 0.8906 30 1 2.6846 -3.7146 -0.8894 31 1 0.3196 -4.8642 0.7657 32 1 1.9071 -5.6610 -1.6952 33 1 -0.5695 -6.7157 -0.1427 34 1 0.7021 -7.8021 -0.7516 35 1 -0.2893 -6.2895 -2.9207 36 1 -3.5304 -6.4186 -3.2255 37 1 -2.1242 -5.8252 -4.1444 38 1 -3.0468 -7.2808 -6.1898 39 1 -3.9462 -5.8018 -5.7612 40 1 -5.4290 -7.8168 -6.0224 41 1 -5.5104 -7.0923 -4.4013 42 1 -4.4917 -8.0543 -2.4202 43 1 -4.6903 -9.8883 -2.4381 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321127653.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:27:19 Heat of formation + Delta-G solvation = -19.703542 kcal Electronic energy + Delta-G solvation = -20924.541411 eV Core-core repulsion = 17776.475843 eV Total energy + Delta-G solvation = -3148.065568 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.56484 -39.50179 -37.64024 -36.20985 -34.58637 -33.73825 -32.62364 -31.86201 -28.62961 -26.31934 -25.56222 -23.85436 -23.43597 -22.59121 -21.46978 -20.70055 -19.43449 -19.09577 -18.05708 -17.41187 -16.95309 -16.63004 -16.28339 -15.71208 -15.28841 -15.16062 -14.88092 -14.83524 -14.68646 -14.19746 -14.10659 -13.70460 -13.49654 -13.32927 -13.00125 -12.84168 -12.70129 -12.32294 -12.23922 -12.11236 -11.99491 -11.79678 -11.74834 -11.34160 -11.17568 -11.03215 -10.68088 -10.59092 -10.25683 -9.95628 -9.02216 -7.96327 -5.26468 1.04986 1.48242 1.51310 1.57641 1.64528 2.29778 2.56962 2.95383 3.37354 3.55089 3.67318 3.72641 3.83401 3.99401 4.07681 4.15063 4.22376 4.22885 4.30403 4.45219 4.52654 4.55452 4.62690 4.64245 4.68901 4.76175 4.89119 4.91654 4.99528 5.06709 5.10134 5.19486 5.26371 5.32697 5.33680 5.38500 5.46872 5.49789 5.64933 5.82555 6.25499 6.55745 7.24872 7.31624 8.05510 8.29725 9.26948 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.021860 B = 0.002912 C = 0.002661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.560715 B = 9613.430519 C =10521.669096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.075 4.075 3 Si 0.977 3.023 4 H -0.275 1.275 5 H -0.295 1.295 6 H -0.278 1.278 7 C -0.251 4.251 8 H 0.078 0.922 9 N -0.745 5.745 10 C 0.174 3.826 11 C -0.133 4.133 12 C -0.160 4.160 13 C 0.158 3.842 14 N -0.718 5.718 15 C 0.511 3.489 16 O -0.578 6.578 17 C -0.069 4.069 18 H 0.124 0.876 19 C -0.117 4.117 20 C -0.110 4.110 21 C -0.095 4.095 22 C -0.132 4.132 23 H 0.118 0.882 24 C -0.181 4.181 25 C -0.124 4.124 26 H 0.098 0.902 27 H 0.252 0.748 28 H 0.374 0.626 29 H 0.030 0.970 30 H 0.034 0.966 31 H 0.105 0.895 32 H 0.132 0.868 33 H 0.055 0.945 34 H 0.077 0.923 35 H 0.413 0.587 36 H 0.055 0.945 37 H 0.079 0.921 38 H 0.086 0.914 39 H 0.074 0.926 40 H 0.083 0.917 41 H 0.058 0.942 42 H 0.076 0.924 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.083 -18.656 -13.143 23.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.267 4.267 3 Si 0.805 3.195 4 H -0.201 1.201 5 H -0.221 1.221 6 H -0.204 1.204 7 C -0.383 4.383 8 H 0.096 0.904 9 N -0.387 5.387 10 C 0.048 3.952 11 C -0.152 4.152 12 C -0.179 4.179 13 C 0.034 3.966 14 N -0.370 5.370 15 C 0.299 3.701 16 O -0.458 6.458 17 C -0.090 4.090 18 H 0.142 0.858 19 C -0.155 4.155 20 C -0.148 4.148 21 C -0.132 4.132 22 C -0.150 4.150 23 H 0.136 0.864 24 C -0.219 4.219 25 C -0.143 4.143 26 H 0.116 0.884 27 H 0.061 0.939 28 H 0.206 0.794 29 H 0.047 0.953 30 H 0.052 0.948 31 H 0.123 0.877 32 H 0.149 0.851 33 H 0.073 0.927 34 H 0.095 0.905 35 H 0.250 0.750 36 H 0.073 0.927 37 H 0.098 0.902 38 H 0.105 0.895 39 H 0.092 0.908 40 H 0.101 0.899 41 H 0.077 0.923 42 H 0.095 0.905 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -6.105 -19.126 -12.501 23.651 hybrid contribution 0.130 1.188 0.419 1.267 sum -5.975 -17.938 -12.081 22.438 Atomic orbital electron populations 1.69822 1.06695 1.26282 1.59180 1.25623 0.96444 1.01262 1.03411 0.85168 0.77184 0.78832 0.78301 1.20099 1.22106 1.20378 1.19640 0.91629 0.85223 1.41774 0.90398 1.42527 1.05691 1.00932 1.89582 1.19905 0.93124 0.83657 0.98489 1.23001 0.98850 0.94378 0.99003 1.22781 1.00005 0.95417 0.99710 1.20192 0.93488 0.97352 0.85552 1.46021 1.40909 1.33356 1.16722 1.21235 0.78783 0.79732 0.90352 1.90671 1.65008 1.41951 1.48165 1.20707 0.97786 0.96604 0.93899 0.85820 1.22540 0.99784 0.94645 0.98552 1.22427 0.96602 1.00425 0.95325 1.21144 0.97804 0.93285 1.00966 1.22387 0.98549 1.00315 0.93748 0.86396 1.22479 1.02930 1.02434 0.94012 1.20945 0.89842 0.98625 1.04896 0.88406 0.93910 0.79420 0.95258 0.94807 0.87679 0.85067 0.92697 0.90458 0.75027 0.92664 0.90233 0.89499 0.90775 0.89885 0.92314 0.90510 0.89532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.30 13.06 21.65 0.28 -59.02 16 2 C -0.08 -4.30 5.50 84.86 0.47 -3.84 16 3 Si 0.98 45.68 29.55 68.60 2.03 47.70 16 4 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 5 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 6 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 7 C -0.25 -14.03 9.99 84.03 0.84 -13.19 16 8 H 0.08 4.13 7.83 -2.91 -0.02 4.11 16 9 N -0.74 -38.07 5.59 -347.16 -1.94 -40.01 16 10 C 0.17 6.85 6.70 85.63 0.57 7.42 16 11 C -0.13 -4.23 9.24 25.64 0.24 -4.00 16 12 C -0.16 -4.06 9.24 25.64 0.24 -3.83 16 13 C 0.16 3.86 6.11 85.63 0.52 4.38 16 14 N -0.72 -15.71 5.44 -466.79 -2.54 -18.25 16 15 C 0.51 12.44 7.08 87.66 0.62 13.06 16 16 O -0.58 -18.75 15.60 -3.03 -0.05 -18.80 16 17 C -0.07 -1.21 2.56 -11.89 -0.03 -1.24 16 18 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 19 C -0.12 -1.90 4.98 32.43 0.16 -1.74 16 20 C -0.11 -1.36 6.16 32.43 0.20 -1.16 16 21 C -0.09 -1.23 5.76 30.46 0.18 -1.05 16 22 C -0.13 -1.98 6.29 -10.98 -0.07 -2.05 16 23 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 24 C -0.18 -3.73 8.86 29.59 0.26 -3.46 16 25 C -0.12 -2.32 4.67 -12.63 -0.06 -2.37 16 26 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 27 H 0.25 14.94 8.31 -92.71 -0.77 14.17 16 28 H 0.37 20.40 7.66 -92.71 -0.71 19.69 16 29 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.03 1.28 7.79 -2.39 -0.02 1.26 16 31 H 0.11 3.42 7.84 -2.91 -0.02 3.40 16 32 H 0.13 2.95 7.84 -2.91 -0.02 2.93 16 33 H 0.05 1.53 7.79 -2.39 -0.02 1.51 16 34 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.41 7.26 7.90 -92.71 -0.73 6.53 16 36 H 0.05 1.11 6.94 -2.39 -0.02 1.10 16 37 H 0.08 1.17 7.64 -2.39 -0.02 1.15 16 38 H 0.09 0.86 8.12 -2.39 -0.02 0.84 16 39 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.08 0.82 8.14 -2.38 -0.02 0.80 16 41 H 0.06 0.87 8.06 -2.39 -0.02 0.85 16 42 H 0.08 1.80 7.03 -2.38 -0.02 1.79 16 43 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -68.96 349.60 1.48 -67.48 By element: Atomic # 1 Polarization: 34.40 SS G_CDS: -0.44 Total: 33.96 kcal Atomic # 6 Polarization: -17.20 SS G_CDS: 4.14 Total: -13.07 kcal Atomic # 7 Polarization: -113.09 SS G_CDS: -4.20 Total: -117.28 kcal Atomic # 8 Polarization: -18.75 SS G_CDS: -0.05 Total: -18.80 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.70 kcal Total: -68.96 1.48 -67.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321127653.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.781 kcal (2) G-P(sol) polarization free energy of solvation -68.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds