Wall clock time and date at job start Tue Mar 31 2020 00:44:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86797 * 119.99626 * 2 1 4 4 H 1.48504 * 109.47081 * 269.99826 * 3 2 1 5 5 H 1.48500 * 109.47506 * 30.00309 * 3 2 1 6 6 H 1.48504 * 109.46657 * 150.00255 * 3 2 1 7 7 C 1.38807 * 119.99889 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00046 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00166 * 359.97438 * 7 2 1 10 10 C 1.46507 * 119.99982 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.46805 * 180.02562 * 10 9 7 12 12 C 1.30998 * 119.99786 * 125.00336 * 11 10 9 13 13 C 1.50693 * 120.00090 * 179.97438 * 12 11 10 14 14 N 1.46509 * 109.47311 * 125.00098 * 13 12 11 15 15 C 1.34767 * 120.00211 * 180.02562 * 14 13 12 16 16 O 1.21284 * 120.00302 * 359.97438 * 15 14 13 17 17 C 1.50703 * 119.99928 * 179.97438 * 15 14 13 18 18 C 1.52999 * 109.47264 * 179.97438 * 17 15 14 19 19 H 1.09004 * 109.63896 * 305.42470 * 18 17 15 20 20 C 1.53029 * 109.64258 * 66.05461 * 18 17 15 21 21 C 1.50064 * 110.14915 * 169.11734 * 20 18 17 22 22 C 1.29258 * 124.01872 * 342.74520 * 21 20 18 23 23 C 1.50070 * 124.21709 * 0.72496 * 22 21 20 24 24 C 1.53024 * 110.03521 * 342.65104 * 23 22 21 25 25 H 0.96995 * 120.00120 * 359.97438 * 1 2 3 26 26 H 0.96997 * 120.00200 * 0.02562 * 9 7 2 27 27 H 1.09007 * 109.46915 * 60.00279 * 10 9 7 28 28 H 1.08993 * 109.46987 * 300.00599 * 10 9 7 29 29 H 1.07995 * 119.99981 * 304.99714 * 11 10 9 30 30 H 1.08007 * 120.00056 * 0.02562 * 12 11 10 31 31 H 1.09003 * 109.47468 * 5.00303 * 13 12 11 32 32 H 1.09003 * 109.47896 * 245.00021 * 13 12 11 33 33 H 0.97003 * 119.99004 * 359.97438 * 14 13 12 34 34 H 1.08995 * 109.46789 * 60.00076 * 17 15 14 35 35 H 1.09001 * 109.46847 * 300.00010 * 17 15 14 36 36 H 1.09000 * 109.35515 * 289.33300 * 20 18 17 37 37 H 1.09002 * 109.35147 * 48.91312 * 20 18 17 38 38 H 1.07999 * 117.96413 * 162.89095 * 21 20 18 39 39 H 1.07996 * 117.82040 * 180.59477 * 22 21 20 40 40 H 1.09002 * 109.35777 * 222.51122 * 23 22 21 41 41 H 1.08998 * 109.35386 * 102.78819 * 23 22 21 42 42 H 1.09005 * 109.63988 * 169.18852 * 24 23 22 43 43 H 1.09001 * 109.64304 * 289.60462 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.0788 -4.8022 -0.0012 12 6 1.1481 -5.7227 -0.9306 13 6 0.1692 -6.8684 -0.9310 14 7 -0.5070 -6.9326 -2.2291 15 6 -1.4321 -7.8849 -2.4607 16 8 -1.7045 -8.6891 -1.5946 17 6 -2.1280 -7.9505 -3.7958 18 6 -3.1219 -9.1138 -3.7962 19 1 -2.6073 -10.0353 -3.5237 20 6 -4.2448 -8.8314 -2.7958 21 6 -5.3563 -9.8240 -2.9725 22 6 -5.5093 -10.5586 -4.0250 23 6 -4.5905 -10.5351 -5.2113 24 6 -3.7413 -9.2622 -5.1916 25 1 -0.4850 0.8400 0.0004 26 1 0.3556 -2.3881 -0.0005 27 1 2.6848 -3.7145 0.8895 28 1 2.6848 -3.7145 -0.8904 29 1 0.3199 -4.8642 0.7647 30 1 1.9075 -5.6610 -1.6963 31 1 -0.5692 -6.7157 -0.1439 32 1 0.7025 -7.8022 -0.7527 33 1 -0.2893 -6.2891 -2.9216 34 1 -1.3900 -8.1034 -4.5831 35 1 -2.6612 -7.0166 -3.9738 36 1 -3.8522 -8.9052 -1.7816 37 1 -4.6298 -7.8249 -2.9595 38 1 -6.0735 -9.9291 -2.1719 39 1 -6.3518 -11.2338 -4.0503 40 1 -5.1816 -10.5609 -6.1267 41 1 -3.9363 -11.4064 -5.1789 42 1 -2.9500 -9.3381 -5.9375 43 1 -4.3698 -8.3990 -5.4107 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321188952.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:44:03 Heat of formation + Delta-G solvation = -16.431536 kcal Electronic energy + Delta-G solvation = -20378.245505 eV Core-core repulsion = 17230.321822 eV Total energy + Delta-G solvation = -3147.923683 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.12555 -38.39761 -36.27218 -34.69919 -33.11365 -32.71632 -30.95757 -30.62483 -28.21193 -26.49569 -24.12618 -23.37958 -22.06141 -21.45926 -20.44226 -19.37018 -18.17764 -17.15395 -16.98008 -16.37803 -15.81019 -15.53124 -14.81266 -14.57811 -14.32751 -14.12275 -13.64491 -13.50980 -13.28051 -13.04496 -12.98270 -12.67461 -12.54920 -12.25831 -12.05026 -11.88926 -11.69224 -11.05347 -10.92607 -10.84773 -10.78966 -10.63970 -10.35236 -10.10186 -9.87926 -9.80825 -9.25742 -9.11276 -8.99232 -8.72522 -6.97412 -5.80371 -3.10081 2.13874 2.27170 2.61558 3.36607 3.41324 3.46424 3.48345 4.40143 4.46449 4.57114 4.57981 4.81848 4.92378 4.97168 5.09068 5.15196 5.25174 5.26184 5.37362 5.43845 5.51179 5.52750 5.56691 5.62766 5.63651 5.75208 5.80495 5.95931 5.98270 6.08115 6.11567 6.20904 6.37010 6.45690 6.48523 6.55342 6.80589 6.88793 7.12940 7.49185 7.65847 8.20179 8.37987 9.49240 10.05436 10.40741 11.42364 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.027985 B = 0.002360 C = 0.002269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.292284 B =11861.879231 C =12335.061388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.014 4.014 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.242 4.242 8 H 0.071 0.929 9 N -0.730 5.730 10 C 0.172 3.828 11 C -0.107 4.107 12 C -0.202 4.202 13 C 0.155 3.845 14 N -0.726 5.726 15 C 0.510 3.490 16 O -0.543 6.543 17 C -0.139 4.139 18 C -0.069 4.069 19 H 0.080 0.920 20 C -0.095 4.095 21 C -0.143 4.143 22 C -0.169 4.169 23 C -0.088 4.088 24 C -0.117 4.117 25 H 0.256 0.744 26 H 0.385 0.615 27 H 0.031 0.969 28 H 0.025 0.975 29 H 0.109 0.891 30 H 0.114 0.886 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.403 0.597 34 H 0.094 0.906 35 H 0.095 0.905 36 H 0.091 0.909 37 H 0.069 0.931 38 H 0.100 0.900 39 H 0.098 0.902 40 H 0.069 0.931 41 H 0.071 0.929 42 H 0.065 0.935 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.119 -20.810 -10.637 24.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.210 4.210 3 Si 0.740 3.260 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.373 4.373 8 H 0.089 0.911 9 N -0.374 5.374 10 C 0.045 3.955 11 C -0.126 4.126 12 C -0.221 4.221 13 C 0.032 3.968 14 N -0.377 5.377 15 C 0.297 3.703 16 O -0.420 6.420 17 C -0.179 4.179 18 C -0.088 4.088 19 H 0.099 0.901 20 C -0.131 4.131 21 C -0.161 4.161 22 C -0.187 4.187 23 C -0.125 4.125 24 C -0.155 4.155 25 H 0.066 0.934 26 H 0.219 0.781 27 H 0.049 0.951 28 H 0.043 0.957 29 H 0.127 0.873 30 H 0.132 0.868 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.237 0.763 34 H 0.112 0.888 35 H 0.113 0.887 36 H 0.109 0.891 37 H 0.087 0.913 38 H 0.118 0.882 39 H 0.116 0.884 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.084 0.916 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -7.176 -21.264 -9.985 24.563 hybrid contribution 0.197 1.302 -0.253 1.341 sum -6.980 -19.962 -10.238 23.495 Atomic orbital electron populations 1.69667 1.05146 1.25764 1.57538 1.24772 0.95572 0.97789 1.02866 0.86155 0.78642 0.83634 0.77544 1.21655 1.21703 1.20701 1.19245 0.91081 0.84016 1.42994 0.91061 1.42301 1.05946 0.99569 1.89594 1.19828 0.92620 0.84586 0.98432 1.23333 0.98267 0.94021 0.97015 1.22698 1.00991 0.97068 1.01349 1.20298 0.93853 0.97479 0.85157 1.46126 1.41294 1.33260 1.17054 1.20715 0.79261 0.80455 0.89875 1.90668 1.63909 1.40486 1.46968 1.21790 0.99420 1.01395 0.95265 1.20942 0.94886 0.97940 0.95063 0.90149 1.20654 0.93491 0.97667 1.01314 1.22064 0.98732 0.97742 0.97612 1.21944 1.00124 1.00766 0.95863 1.20410 0.97195 0.98203 0.96711 1.21688 0.99147 0.98127 0.96505 0.93434 0.78143 0.95138 0.95682 0.87296 0.86799 0.91316 0.91232 0.76255 0.88800 0.88677 0.89083 0.91261 0.88191 0.88381 0.91241 0.91058 0.91604 0.91581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.21 13.06 55.49 0.72 -27.49 16 2 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 3 Si 0.91 22.28 29.55 -169.99 -5.02 17.26 16 4 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 7 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 16 8 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 9 N -0.73 -18.56 5.59 -61.08 -0.34 -18.90 16 10 C 0.17 3.43 6.70 -5.19 -0.03 3.40 16 11 C -0.11 -1.73 9.24 -36.03 -0.33 -2.06 16 12 C -0.20 -2.71 9.24 -36.03 -0.33 -3.04 16 13 C 0.15 1.94 6.11 -5.19 -0.03 1.91 16 14 N -0.73 -8.11 5.55 -61.47 -0.34 -8.45 16 15 C 0.51 6.01 7.59 -10.99 -0.08 5.92 16 16 O -0.54 -8.24 14.09 5.55 0.08 -8.16 16 17 C -0.14 -1.16 5.17 -27.88 -0.14 -1.31 16 18 C -0.07 -0.63 1.87 -90.40 -0.17 -0.80 16 19 H 0.08 0.85 7.93 -51.93 -0.41 0.44 16 20 C -0.09 -0.97 5.06 -28.18 -0.14 -1.11 16 21 C -0.14 -1.37 9.80 -35.86 -0.35 -1.72 16 22 C -0.17 -1.44 9.79 -35.85 -0.35 -1.79 16 23 C -0.09 -0.65 6.12 -28.18 -0.17 -0.82 16 24 C -0.12 -0.86 5.30 -26.52 -0.14 -1.00 16 25 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 26 H 0.39 10.30 7.66 -40.82 -0.31 9.99 16 27 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.03 0.50 7.79 -51.93 -0.40 0.09 16 29 H 0.11 1.74 7.84 -52.49 -0.41 1.32 16 30 H 0.11 1.44 7.84 -52.48 -0.41 1.03 16 31 H 0.07 0.94 7.79 -51.93 -0.40 0.53 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.40 3.76 8.46 -40.82 -0.35 3.41 16 34 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.09 0.70 8.09 -51.93 -0.42 0.28 16 36 H 0.09 1.13 6.30 -51.93 -0.33 0.81 16 37 H 0.07 0.68 8.06 -51.93 -0.42 0.26 16 38 H 0.10 0.88 8.06 -52.49 -0.42 0.46 16 39 H 0.10 0.73 8.06 -52.49 -0.42 0.31 16 40 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.07 0.48 8.13 -51.93 -0.42 0.06 16 LS Contribution 353.66 15.07 5.33 5.33 Total: -1.00 -32.14 353.66 -9.33 -41.46 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: -7.22 Total: 8.80 kcal Atomic # 6 Polarization: -7.32 SS G_CDS: -2.53 Total: -9.85 kcal Atomic # 7 Polarization: -54.89 SS G_CDS: 0.04 Total: -54.84 kcal Atomic # 8 Polarization: -8.24 SS G_CDS: 0.08 Total: -8.16 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.14 -9.33 -41.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321188952.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.030 kcal (2) G-P(sol) polarization free energy of solvation -32.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds