Wall clock time and date at job start Tue Mar 31 2020 00:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86797 * 119.99626 * 2 1 4 4 H 1.48504 * 109.47081 * 269.99826 * 3 2 1 5 5 H 1.48500 * 109.47506 * 30.00309 * 3 2 1 6 6 H 1.48504 * 109.46657 * 150.00255 * 3 2 1 7 7 C 1.38807 * 119.99889 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00046 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00166 * 359.97438 * 7 2 1 10 10 C 1.46507 * 119.99982 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.46805 * 180.02562 * 10 9 7 12 12 C 1.30998 * 119.99786 * 125.00336 * 11 10 9 13 13 C 1.50693 * 120.00090 * 179.97438 * 12 11 10 14 14 N 1.46509 * 109.47311 * 125.00098 * 13 12 11 15 15 C 1.34767 * 120.00211 * 180.02562 * 14 13 12 16 16 O 1.21284 * 120.00302 * 359.97438 * 15 14 13 17 17 C 1.50703 * 119.99928 * 179.97438 * 15 14 13 18 18 C 1.52999 * 109.47264 * 179.97438 * 17 15 14 19 19 H 1.09004 * 109.63896 * 305.42470 * 18 17 15 20 20 C 1.53029 * 109.64258 * 66.05461 * 18 17 15 21 21 C 1.50064 * 110.14915 * 169.11734 * 20 18 17 22 22 C 1.29258 * 124.01872 * 342.74520 * 21 20 18 23 23 C 1.50070 * 124.21709 * 0.72496 * 22 21 20 24 24 C 1.53024 * 110.03521 * 342.65104 * 23 22 21 25 25 H 0.96995 * 120.00120 * 359.97438 * 1 2 3 26 26 H 0.96997 * 120.00200 * 0.02562 * 9 7 2 27 27 H 1.09007 * 109.46915 * 60.00279 * 10 9 7 28 28 H 1.08993 * 109.46987 * 300.00599 * 10 9 7 29 29 H 1.07995 * 119.99981 * 304.99714 * 11 10 9 30 30 H 1.08007 * 120.00056 * 0.02562 * 12 11 10 31 31 H 1.09003 * 109.47468 * 5.00303 * 13 12 11 32 32 H 1.09003 * 109.47896 * 245.00021 * 13 12 11 33 33 H 0.97003 * 119.99004 * 359.97438 * 14 13 12 34 34 H 1.08995 * 109.46789 * 60.00076 * 17 15 14 35 35 H 1.09001 * 109.46847 * 300.00010 * 17 15 14 36 36 H 1.09000 * 109.35515 * 289.33300 * 20 18 17 37 37 H 1.09002 * 109.35147 * 48.91312 * 20 18 17 38 38 H 1.07999 * 117.96413 * 162.89095 * 21 20 18 39 39 H 1.07996 * 117.82040 * 180.59477 * 22 21 20 40 40 H 1.09002 * 109.35777 * 222.51122 * 23 22 21 41 41 H 1.08998 * 109.35386 * 102.78819 * 23 22 21 42 42 H 1.09005 * 109.63988 * 169.18852 * 24 23 22 43 43 H 1.09001 * 109.64304 * 289.60462 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.0788 -4.8022 -0.0012 12 6 1.1481 -5.7227 -0.9306 13 6 0.1692 -6.8684 -0.9310 14 7 -0.5070 -6.9326 -2.2291 15 6 -1.4321 -7.8849 -2.4607 16 8 -1.7045 -8.6891 -1.5946 17 6 -2.1280 -7.9505 -3.7958 18 6 -3.1219 -9.1138 -3.7962 19 1 -2.6073 -10.0353 -3.5237 20 6 -4.2448 -8.8314 -2.7958 21 6 -5.3563 -9.8240 -2.9725 22 6 -5.5093 -10.5586 -4.0250 23 6 -4.5905 -10.5351 -5.2113 24 6 -3.7413 -9.2622 -5.1916 25 1 -0.4850 0.8400 0.0004 26 1 0.3556 -2.3881 -0.0005 27 1 2.6848 -3.7145 0.8895 28 1 2.6848 -3.7145 -0.8904 29 1 0.3199 -4.8642 0.7647 30 1 1.9075 -5.6610 -1.6963 31 1 -0.5692 -6.7157 -0.1439 32 1 0.7025 -7.8022 -0.7527 33 1 -0.2893 -6.2891 -2.9216 34 1 -1.3900 -8.1034 -4.5831 35 1 -2.6612 -7.0166 -3.9738 36 1 -3.8522 -8.9052 -1.7816 37 1 -4.6298 -7.8249 -2.9595 38 1 -6.0735 -9.9291 -2.1719 39 1 -6.3518 -11.2338 -4.0503 40 1 -5.1816 -10.5609 -6.1267 41 1 -3.9363 -11.4064 -5.1789 42 1 -2.9500 -9.3381 -5.9375 43 1 -4.3698 -8.3990 -5.4107 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321188952.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:44:02 Heat of formation + Delta-G solvation = -36.398024 kcal Electronic energy + Delta-G solvation = -20379.111316 eV Core-core repulsion = 17230.321822 eV Total energy + Delta-G solvation = -3148.789495 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.01643 -39.15915 -37.64371 -36.19008 -34.40724 -33.72030 -32.38583 -31.59596 -29.33093 -27.71875 -25.74051 -24.12967 -23.58811 -22.30151 -21.40753 -20.57933 -19.13192 -18.85579 -17.91870 -17.23849 -16.74528 -16.61498 -16.45766 -15.69713 -15.41841 -15.20801 -15.04547 -14.87608 -14.52878 -14.09335 -13.82214 -13.63195 -13.47919 -13.29376 -13.17568 -12.95092 -12.83722 -12.73960 -12.40975 -12.19403 -11.99368 -11.78564 -11.62618 -11.49632 -11.06584 -10.99856 -10.79720 -10.28597 -9.94045 -9.82924 -9.02311 -7.96805 -5.26891 1.06794 1.44046 1.48151 1.49913 1.58611 1.70094 2.43994 2.56687 3.37023 3.70820 3.74782 3.79289 3.88317 4.08908 4.14021 4.22874 4.29139 4.42201 4.47930 4.50593 4.60210 4.67577 4.71079 4.77010 4.80275 4.84135 4.92020 4.96971 5.00243 5.06709 5.12643 5.24143 5.38432 5.42913 5.46980 5.53553 5.66162 5.80670 5.83716 6.10870 6.25372 6.60569 7.30377 7.31306 8.05328 8.29328 9.26747 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.027985 B = 0.002360 C = 0.002269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.292284 B =11861.879231 C =12335.061388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.077 4.077 3 Si 0.977 3.023 4 H -0.284 1.284 5 H -0.296 1.296 6 H -0.269 1.269 7 C -0.249 4.249 8 H 0.079 0.921 9 N -0.745 5.745 10 C 0.174 3.826 11 C -0.134 4.134 12 C -0.160 4.160 13 C 0.157 3.843 14 N -0.721 5.721 15 C 0.506 3.494 16 O -0.582 6.582 17 C -0.132 4.132 18 C -0.067 4.067 19 H 0.062 0.938 20 C -0.093 4.093 21 C -0.168 4.168 22 C -0.162 4.162 23 C -0.092 4.092 24 C -0.112 4.112 25 H 0.252 0.748 26 H 0.374 0.626 27 H 0.030 0.970 28 H 0.034 0.966 29 H 0.105 0.895 30 H 0.131 0.869 31 H 0.055 0.945 32 H 0.076 0.924 33 H 0.415 0.585 34 H 0.123 0.877 35 H 0.110 0.890 36 H 0.061 0.939 37 H 0.070 0.930 38 H 0.098 0.902 39 H 0.109 0.891 40 H 0.086 0.914 41 H 0.076 0.924 42 H 0.085 0.915 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.297 -21.327 -12.720 25.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.269 4.269 3 Si 0.806 3.194 4 H -0.211 1.211 5 H -0.222 1.222 6 H -0.193 1.193 7 C -0.380 4.380 8 H 0.096 0.904 9 N -0.387 5.387 10 C 0.048 3.952 11 C -0.154 4.154 12 C -0.179 4.179 13 C 0.034 3.966 14 N -0.373 5.373 15 C 0.294 3.706 16 O -0.462 6.462 17 C -0.171 4.171 18 C -0.086 4.086 19 H 0.080 0.920 20 C -0.130 4.130 21 C -0.186 4.186 22 C -0.180 4.180 23 C -0.129 4.129 24 C -0.150 4.150 25 H 0.061 0.939 26 H 0.206 0.794 27 H 0.047 0.953 28 H 0.052 0.948 29 H 0.123 0.877 30 H 0.149 0.851 31 H 0.073 0.927 32 H 0.094 0.906 33 H 0.251 0.749 34 H 0.141 0.859 35 H 0.129 0.871 36 H 0.079 0.921 37 H 0.088 0.912 38 H 0.116 0.884 39 H 0.127 0.873 40 H 0.105 0.895 41 H 0.094 0.906 42 H 0.103 0.897 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -6.312 -21.801 -12.086 25.714 hybrid contribution -0.051 1.312 0.382 1.367 sum -6.363 -20.489 -11.704 24.439 Atomic orbital electron populations 1.69827 1.06706 1.26219 1.59323 1.25636 0.96466 1.01313 1.03508 0.85087 0.77654 0.79118 0.77570 1.21109 1.22213 1.19349 1.19678 0.91644 0.85204 1.41514 0.90350 1.42541 1.05697 1.00953 1.89546 1.19911 0.93145 0.83668 0.98488 1.22998 0.98885 0.94415 0.99063 1.22790 1.00011 0.95432 0.99643 1.20179 0.93495 0.97221 0.85741 1.46057 1.41041 1.33486 1.16687 1.21363 0.78842 0.79634 0.90722 1.90663 1.65018 1.42008 1.48490 1.21833 0.99702 1.01817 0.93751 1.20903 0.94460 0.97385 0.95900 0.91955 1.20580 0.94224 0.98039 1.00159 1.22105 0.99144 0.98850 0.98473 1.22215 1.00306 0.99712 0.95786 1.20509 0.97263 0.98453 0.96703 1.21677 0.99637 0.98221 0.95448 0.93916 0.79431 0.95270 0.94796 0.87669 0.85106 0.92684 0.90556 0.74906 0.85939 0.87136 0.92067 0.91210 0.88381 0.87317 0.89544 0.90607 0.89684 0.91248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.46 13.06 21.65 0.28 -59.18 16 2 C -0.08 -4.42 5.50 84.86 0.47 -3.96 16 3 Si 0.98 45.75 29.55 68.60 2.03 47.77 16 4 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 5 H -0.30 -13.94 7.11 99.48 0.71 -13.24 16 6 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 7 C -0.25 -13.89 9.99 84.03 0.84 -13.05 16 8 H 0.08 4.16 7.83 -2.91 -0.02 4.14 16 9 N -0.74 -38.03 5.59 -347.16 -1.94 -39.97 16 10 C 0.17 6.81 6.70 85.63 0.57 7.39 16 11 C -0.13 -4.25 9.24 25.65 0.24 -4.01 16 12 C -0.16 -4.00 9.24 25.65 0.24 -3.76 16 13 C 0.16 3.75 6.11 85.63 0.52 4.27 16 14 N -0.72 -14.91 5.55 -466.78 -2.59 -17.50 16 15 C 0.51 11.40 7.59 87.66 0.67 12.07 16 16 O -0.58 -17.86 14.09 -3.04 -0.04 -17.90 16 17 C -0.13 -1.93 5.17 29.85 0.15 -1.77 16 18 C -0.07 -1.15 1.87 -10.65 -0.02 -1.17 16 19 H 0.06 1.29 7.93 -2.39 -0.02 1.27 16 20 C -0.09 -1.93 5.06 29.66 0.15 -1.78 16 21 C -0.17 -3.21 9.80 27.21 0.27 -2.94 16 22 C -0.16 -2.58 9.79 27.22 0.27 -2.31 16 23 C -0.09 -1.15 6.12 29.66 0.18 -0.96 16 24 C -0.11 -1.36 5.30 30.73 0.16 -1.20 16 25 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 26 H 0.37 20.39 7.66 -92.71 -0.71 19.68 16 27 H 0.03 1.16 8.14 -2.38 -0.02 1.14 16 28 H 0.03 1.28 7.79 -2.39 -0.02 1.26 16 29 H 0.11 3.40 7.84 -2.91 -0.02 3.38 16 30 H 0.13 2.90 7.84 -2.91 -0.02 2.88 16 31 H 0.05 1.50 7.79 -2.39 -0.02 1.48 16 32 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.41 6.69 8.46 -92.71 -0.78 5.91 16 34 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.11 1.33 8.09 -2.39 -0.02 1.31 16 36 H 0.06 1.63 6.30 -2.39 -0.02 1.61 16 37 H 0.07 1.37 8.06 -2.39 -0.02 1.35 16 38 H 0.10 1.82 8.06 -2.91 -0.02 1.79 16 39 H 0.11 1.46 8.06 -2.91 -0.02 1.44 16 40 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.08 0.73 8.14 -2.38 -0.02 0.71 16 43 H 0.07 0.82 8.13 -2.39 -0.02 0.80 16 Total: -1.00 -69.72 353.66 1.93 -67.79 By element: Atomic # 1 Polarization: 32.69 SS G_CDS: -0.51 Total: 32.18 kcal Atomic # 6 Polarization: -17.89 SS G_CDS: 4.70 Total: -13.19 kcal Atomic # 7 Polarization: -112.40 SS G_CDS: -4.25 Total: -116.65 kcal Atomic # 8 Polarization: -17.86 SS G_CDS: -0.04 Total: -17.90 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.77 kcal Total: -69.72 1.93 -67.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321188952.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.389 kcal (2) G-P(sol) polarization free energy of solvation -69.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds