Wall clock time and date at job start Tue Mar 31 2020 00:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86799 * 119.99877 * 2 1 4 4 H 1.48506 * 109.47154 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47392 * 299.99377 * 3 2 1 6 6 H 1.48496 * 109.47462 * 59.99939 * 3 2 1 7 7 C 1.38812 * 120.00066 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00056 * 180.02562 * 7 2 1 9 9 N 1.36930 * 120.00004 * 359.97438 * 7 2 1 10 10 C 1.46498 * 120.00187 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.47459 * 180.02562 * 10 9 7 12 12 C 1.31000 * 120.00238 * 124.99715 * 11 10 9 13 13 C 1.50703 * 119.99880 * 179.97438 * 12 11 10 14 14 N 1.46502 * 109.46792 * 125.00367 * 13 12 11 15 15 C 1.34774 * 119.99716 * 180.02562 * 14 13 12 16 16 O 1.21279 * 120.00230 * 359.97438 * 15 14 13 17 17 C 1.50702 * 119.99864 * 180.02562 * 15 14 13 18 18 C 1.53004 * 109.47082 * 179.97438 * 17 15 14 19 19 H 1.09002 * 109.64241 * 54.99757 * 18 17 15 20 20 C 1.53021 * 109.81414 * 294.46546 * 18 17 15 21 21 C 1.50070 * 110.14806 * 190.77626 * 20 18 17 22 22 C 1.29444 * 124.07244 * 17.13408 * 21 20 18 23 23 C 1.50059 * 124.07672 * 359.52988 * 22 21 20 24 24 C 1.53022 * 110.14941 * 17.13343 * 23 22 21 25 25 H 0.97005 * 119.99847 * 0.02562 * 1 2 3 26 26 H 0.96999 * 119.99896 * 0.02562 * 9 7 2 27 27 H 1.08996 * 109.47265 * 59.99930 * 10 9 7 28 28 H 1.09000 * 109.47491 * 300.00222 * 10 9 7 29 29 H 1.08007 * 119.99918 * 305.00324 * 11 10 9 30 30 H 1.07996 * 120.00014 * 0.02562 * 12 11 10 31 31 H 1.09000 * 109.47299 * 5.00561 * 13 12 11 32 32 H 1.08996 * 109.46985 * 245.00381 * 13 12 11 33 33 H 0.96991 * 120.00080 * 359.97438 * 14 13 12 34 34 H 1.08999 * 109.47560 * 59.99704 * 17 15 14 35 35 H 1.08999 * 109.46948 * 299.99091 * 17 15 14 36 36 H 1.08995 * 109.36363 * 310.98587 * 20 18 17 37 37 H 1.09003 * 109.35624 * 70.57188 * 20 18 17 38 38 H 1.08000 * 117.96558 * 197.10971 * 21 20 18 39 39 H 1.08000 * 117.96235 * 179.50534 * 22 21 20 40 40 H 1.09007 * 109.36247 * 256.92389 * 23 22 21 41 41 H 1.09005 * 109.24862 * 137.26952 * 23 22 21 42 42 H 1.09007 * 109.64518 * 190.88479 * 24 23 22 43 43 H 1.08998 * 109.82265 * 70.35130 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0016 10 6 2.0581 -3.6567 0.0027 11 6 1.0788 -4.8022 0.0031 12 6 1.1481 -5.7235 -0.9256 13 6 0.1691 -6.8693 -0.9248 14 7 -0.5071 -6.9346 -2.2227 15 6 -1.4323 -7.8872 -2.4533 16 8 -1.7046 -8.6905 -1.5865 17 6 -2.1275 -7.9547 -3.7886 18 6 -3.1215 -9.1179 -3.7878 19 1 -3.8075 -9.0131 -2.9472 20 6 -2.3674 -10.4445 -3.6741 21 6 -3.2985 -11.5923 -3.9345 22 6 -4.4497 -11.4751 -4.5146 23 6 -5.0186 -10.1736 -4.9985 24 6 -3.9129 -9.1209 -5.1019 25 1 -0.4850 0.8401 -0.0004 26 1 0.3556 -2.3880 0.0016 27 1 2.6847 -3.7137 0.8927 28 1 2.6848 -3.7153 -0.8872 29 1 0.3198 -4.8635 0.7691 30 1 1.9072 -5.6624 -1.6912 31 1 -0.5692 -6.7159 -0.1377 32 1 0.7026 -7.8028 -0.7456 33 1 -0.2896 -6.2919 -2.9158 34 1 -1.3891 -8.1088 -4.5754 35 1 -2.6606 -7.0211 -3.9684 36 1 -1.5576 -10.4636 -4.4034 37 1 -1.9502 -10.5381 -2.6714 38 1 -2.9885 -12.5775 -3.6187 39 1 -5.0372 -12.3696 -4.6596 40 1 -5.7805 -9.8298 -4.2988 41 1 -5.4697 -10.3213 -5.9798 42 1 -4.3562 -8.1384 -5.2647 43 1 -3.2472 -9.3642 -5.9300 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321188954.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:44:06 Heat of formation + Delta-G solvation = -16.639704 kcal Electronic energy + Delta-G solvation = -20344.562540 eV Core-core repulsion = 17196.629830 eV Total energy + Delta-G solvation = -3147.932710 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.12856 -38.39785 -36.27307 -34.70176 -33.11351 -32.71758 -30.96225 -30.62736 -28.22124 -26.50165 -24.12895 -23.38765 -22.06513 -21.46607 -20.44784 -19.36339 -18.19907 -17.16142 -16.97103 -16.38380 -15.81493 -15.53595 -14.86182 -14.55018 -14.32876 -14.09963 -13.69532 -13.48669 -13.28279 -13.08985 -12.98919 -12.64433 -12.55577 -12.27731 -12.05176 -11.86135 -11.73163 -11.05807 -10.93494 -10.85957 -10.80421 -10.63602 -10.36977 -10.07241 -9.86014 -9.81263 -9.24555 -9.15974 -8.99065 -8.72159 -6.97504 -5.80676 -3.10281 2.10785 2.27168 2.61495 3.36568 3.40935 3.46545 3.48847 4.39346 4.45799 4.56726 4.57630 4.81350 4.92951 4.96381 5.09035 5.13318 5.22963 5.25943 5.36441 5.44374 5.48130 5.52607 5.58329 5.62009 5.63636 5.73627 5.80602 5.93747 5.98402 6.06314 6.11328 6.20244 6.36916 6.45519 6.46537 6.55283 6.77724 6.88801 7.12889 7.49151 7.66280 8.20165 8.37633 9.49030 10.05297 10.40554 11.42105 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.032804 B = 0.002295 C = 0.002188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.340784 B =12195.377538 C =12794.377132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.014 4.014 3 Si 0.909 3.091 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.242 4.242 8 H 0.072 0.928 9 N -0.730 5.730 10 C 0.172 3.828 11 C -0.107 4.107 12 C -0.202 4.202 13 C 0.155 3.845 14 N -0.726 5.726 15 C 0.510 3.490 16 O -0.543 6.543 17 C -0.138 4.138 18 C -0.071 4.071 19 H 0.081 0.919 20 C -0.093 4.093 21 C -0.146 4.146 22 C -0.167 4.167 23 C -0.089 4.089 24 C -0.117 4.117 25 H 0.255 0.745 26 H 0.385 0.615 27 H 0.031 0.969 28 H 0.025 0.975 29 H 0.109 0.891 30 H 0.114 0.886 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.403 0.597 34 H 0.093 0.907 35 H 0.096 0.904 36 H 0.067 0.933 37 H 0.091 0.909 38 H 0.099 0.901 39 H 0.099 0.901 40 H 0.072 0.928 41 H 0.069 0.931 42 H 0.067 0.933 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.306 -21.537 -11.027 25.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.210 4.210 3 Si 0.740 3.260 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.373 4.373 8 H 0.090 0.910 9 N -0.374 5.374 10 C 0.045 3.955 11 C -0.126 4.126 12 C -0.221 4.221 13 C 0.032 3.968 14 N -0.377 5.377 15 C 0.297 3.703 16 O -0.420 6.420 17 C -0.178 4.178 18 C -0.090 4.090 19 H 0.099 0.901 20 C -0.129 4.129 21 C -0.164 4.164 22 C -0.185 4.185 23 C -0.126 4.126 24 C -0.154 4.154 25 H 0.065 0.935 26 H 0.219 0.781 27 H 0.049 0.951 28 H 0.043 0.957 29 H 0.127 0.873 30 H 0.132 0.868 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.237 0.763 34 H 0.111 0.889 35 H 0.114 0.886 36 H 0.085 0.915 37 H 0.109 0.891 38 H 0.117 0.883 39 H 0.117 0.883 40 H 0.091 0.909 41 H 0.088 0.912 42 H 0.085 0.915 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.349 -21.999 -10.386 25.143 hybrid contribution 0.277 1.222 -0.286 1.285 sum -6.071 -20.778 -10.672 24.135 Atomic orbital electron populations 1.69677 1.05148 1.25642 1.57613 1.24775 0.95576 0.97799 1.02889 0.86086 0.78766 0.83915 0.77225 1.20502 1.21800 1.21798 1.19292 0.91117 0.84005 1.42867 0.90999 1.42305 1.05954 0.99580 1.89575 1.19826 0.92619 0.84585 0.98434 1.23337 0.98266 0.94021 0.97021 1.22699 1.00990 0.97064 1.01351 1.20297 0.93847 0.97476 0.85166 1.46123 1.41279 1.33300 1.17033 1.20715 0.79295 0.80435 0.89857 1.90665 1.64096 1.40368 1.46891 1.21783 0.99593 1.01178 0.95280 1.20950 0.96415 0.93272 0.98313 0.90084 1.20636 0.97044 0.91982 1.03281 1.22101 0.96160 0.99116 0.99015 1.22011 0.97357 0.98220 1.00910 1.20417 0.97966 0.93203 1.01028 1.21685 0.97453 0.98963 0.97341 0.93486 0.78145 0.95136 0.95679 0.87295 0.86798 0.91320 0.91227 0.76256 0.88875 0.88592 0.91475 0.89079 0.88258 0.88332 0.90938 0.91231 0.91478 0.91680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.20 13.06 55.49 0.72 -27.48 16 2 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 3 Si 0.91 22.28 29.55 -169.99 -5.02 17.26 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 7 C -0.24 -6.78 9.99 -15.06 -0.15 -6.93 16 8 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 9 N -0.73 -18.56 5.59 -61.09 -0.34 -18.90 16 10 C 0.17 3.43 6.70 -5.19 -0.03 3.40 16 11 C -0.11 -1.73 9.24 -36.03 -0.33 -2.06 16 12 C -0.20 -2.71 9.24 -36.02 -0.33 -3.04 16 13 C 0.15 1.94 6.11 -5.19 -0.03 1.91 16 14 N -0.73 -8.11 5.55 -61.47 -0.34 -8.45 16 15 C 0.51 6.00 7.59 -10.99 -0.08 5.92 16 16 O -0.54 -8.23 14.07 5.56 0.08 -8.15 16 17 C -0.14 -1.16 5.18 -27.88 -0.14 -1.30 16 18 C -0.07 -0.64 1.87 -90.40 -0.17 -0.81 16 19 H 0.08 0.89 7.94 -51.93 -0.41 0.48 16 20 C -0.09 -0.89 5.06 -28.18 -0.14 -1.04 16 21 C -0.15 -1.32 9.80 -35.90 -0.35 -1.68 16 22 C -0.17 -1.39 9.80 -35.90 -0.35 -1.74 16 23 C -0.09 -0.66 6.11 -28.18 -0.17 -0.83 16 24 C -0.12 -0.86 5.31 -26.51 -0.14 -1.00 16 25 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 26 H 0.38 10.30 7.66 -40.82 -0.31 9.99 16 27 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.03 0.50 7.79 -51.93 -0.40 0.09 16 29 H 0.11 1.74 7.84 -52.48 -0.41 1.33 16 30 H 0.11 1.44 7.84 -52.49 -0.41 1.03 16 31 H 0.07 0.94 7.79 -51.93 -0.40 0.54 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.40 3.76 8.46 -40.82 -0.35 3.41 16 34 H 0.09 0.61 8.11 -51.93 -0.42 0.19 16 35 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.07 0.59 8.08 -51.93 -0.42 0.17 16 37 H 0.09 1.08 6.27 -51.93 -0.33 0.75 16 38 H 0.10 0.82 8.06 -52.49 -0.42 0.40 16 39 H 0.10 0.71 8.06 -52.49 -0.42 0.29 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.07 0.43 8.14 -51.92 -0.42 0.01 16 43 H 0.06 0.45 8.13 -51.93 -0.42 0.03 16 LS Contribution 353.67 15.07 5.33 5.33 Total: -1.00 -32.16 353.67 -9.33 -41.48 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: -7.22 Total: 8.61 kcal Atomic # 6 Polarization: -7.17 SS G_CDS: -2.53 Total: -9.70 kcal Atomic # 7 Polarization: -54.87 SS G_CDS: 0.04 Total: -54.82 kcal Atomic # 8 Polarization: -8.23 SS G_CDS: 0.08 Total: -8.15 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.16 -9.33 -41.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321188954.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.845 kcal (2) G-P(sol) polarization free energy of solvation -32.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds