Wall clock time and date at job start Tue Mar 31 2020 00:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 119.99753 * 2 1 4 4 H 1.48499 * 109.47518 * 240.00086 * 3 2 1 5 5 H 1.48503 * 109.46978 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47066 * 119.99933 * 3 2 1 7 7 C 1.38813 * 120.00569 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00316 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99636 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99926 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.47405 * 179.97438 * 10 9 7 12 12 C 1.31001 * 119.99908 * 127.00262 * 11 10 9 13 13 C 1.50696 * 120.00052 * 7.56244 * 12 11 10 14 14 N 1.46500 * 109.46861 * 127.15386 * 13 12 11 15 15 C 1.34781 * 119.99797 * 180.02562 * 14 13 12 16 16 O 1.21275 * 120.00243 * 0.02562 * 15 14 13 17 17 C 1.50702 * 119.99749 * 180.02562 * 15 14 13 18 18 C 1.53003 * 109.46900 * 180.02562 * 17 15 14 19 19 H 1.09002 * 109.63619 * 305.41748 * 18 17 15 20 20 C 1.53015 * 109.64545 * 66.05202 * 18 17 15 21 21 C 1.50070 * 110.14885 * 169.12009 * 20 18 17 22 22 C 1.29253 * 124.01609 * 342.74144 * 21 20 18 23 23 C 1.50067 * 124.21929 * 0.72714 * 22 21 20 24 24 C 1.53016 * 110.03721 * 342.64931 * 23 22 21 25 25 H 0.96996 * 120.00731 * 0.02562 * 1 2 3 26 26 H 0.96998 * 120.00063 * 359.97438 * 9 7 2 27 27 H 1.09002 * 109.47324 * 59.99828 * 10 9 7 28 28 H 1.08997 * 109.47332 * 299.99916 * 10 9 7 29 29 H 1.07999 * 119.99817 * 307.01254 * 11 10 9 30 30 H 1.07998 * 120.00111 * 187.56177 * 12 11 10 31 31 H 1.09005 * 109.46982 * 7.15791 * 13 12 11 32 32 H 1.08995 * 109.47287 * 247.15755 * 13 12 11 33 33 H 0.97000 * 120.00746 * 0.02562 * 14 13 12 34 34 H 1.08998 * 109.47290 * 60.00405 * 17 15 14 35 35 H 1.09004 * 109.47003 * 299.99748 * 17 15 14 36 36 H 1.08998 * 109.36515 * 289.32936 * 20 18 17 37 37 H 1.09000 * 109.35881 * 48.91556 * 20 18 17 38 38 H 1.08003 * 117.96150 * 162.89193 * 21 20 18 39 39 H 1.08001 * 117.81593 * 180.60164 * 22 21 20 40 40 H 1.09006 * 109.35788 * 222.51164 * 23 22 21 41 41 H 1.08993 * 109.35760 * 102.79105 * 23 22 21 42 42 H 1.08998 * 109.64517 * 169.18960 * 24 23 22 43 43 H 1.08996 * 109.64716 * 289.60729 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6966 -1.2125 5 1 1.2850 2.7465 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0104 -1.2021 -0.0005 8 1 3.0904 -1.2020 -0.0001 9 7 1.3257 -2.3880 -0.0016 10 6 2.0583 -3.6567 -0.0016 11 6 1.0791 -4.8022 -0.0022 12 6 1.1729 -5.7436 -0.9084 13 6 2.3552 -5.7753 -1.8423 14 7 2.9769 -7.1011 -1.7981 15 6 4.0594 -7.3635 -2.5570 16 8 4.5190 -6.5019 -3.2762 17 6 4.6986 -8.7275 -2.5119 18 6 5.8998 -8.7593 -3.4590 19 1 5.5871 -8.4540 -4.4576 20 6 6.9864 -7.8132 -2.9437 21 6 8.2622 -8.0283 -3.7041 22 6 8.5119 -9.0783 -4.4152 23 6 7.5577 -10.2227 -4.5944 24 6 6.4777 -10.1793 -3.5113 25 1 -0.4851 0.8399 -0.0004 26 1 0.3557 -2.3881 -0.0016 27 1 2.6843 -3.7148 0.8888 28 1 2.6856 -3.7141 -0.8911 29 1 0.3000 -4.8470 0.7443 30 1 0.4030 -6.4969 -0.9863 31 1 3.0815 -5.0230 -1.5347 32 1 2.0215 -5.5642 -2.8582 33 1 2.6096 -7.7902 -1.2226 34 1 3.9723 -9.4795 -2.8203 35 1 5.0317 -8.9392 -1.4958 36 1 6.6585 -6.7818 -3.0728 37 1 7.1602 -8.0051 -1.8849 38 1 9.0188 -7.2593 -3.6517 39 1 9.4684 -9.1337 -4.9137 40 1 8.1040 -11.1632 -4.5225 41 1 7.0885 -10.1516 -5.5756 42 1 5.6863 -10.8883 -3.7544 43 1 6.9156 -10.4357 -2.5467 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321188955.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:44:10 Heat of formation + Delta-G solvation = -7.208171 kcal Electronic energy + Delta-G solvation = -20682.718665 eV Core-core repulsion = 17535.194937 eV Total energy + Delta-G solvation = -3147.523728 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.09950 -38.39776 -36.53157 -34.48393 -33.09874 -32.69219 -30.94781 -30.45072 -28.08585 -26.06554 -24.71308 -23.38662 -22.47752 -21.60533 -20.29207 -18.68232 -18.15460 -17.15797 -16.61388 -16.33819 -16.03437 -15.57659 -14.86354 -14.53158 -14.38845 -14.15082 -13.51248 -13.50222 -13.24697 -12.99573 -12.94420 -12.61272 -12.54953 -12.46971 -12.16259 -11.81502 -11.64527 -10.95616 -10.91816 -10.77899 -10.77653 -10.43582 -10.34280 -10.05566 -9.82478 -9.74108 -9.18588 -9.06601 -9.00281 -8.58744 -6.91754 -5.76258 -3.05550 2.15896 2.26920 2.66882 3.38472 3.46181 3.50026 3.51641 4.40469 4.47310 4.58070 4.62257 4.82766 4.92830 5.01828 5.11307 5.16071 5.25143 5.30241 5.38232 5.43500 5.50157 5.56708 5.58692 5.62648 5.70696 5.74991 5.90505 5.96969 5.98402 6.10217 6.21980 6.26704 6.37096 6.50341 6.54713 6.59805 6.82840 6.87889 7.14909 7.53295 7.70309 8.26609 8.42220 9.53466 10.09326 10.44723 11.46484 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.023743 B = 0.002735 C = 0.002499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.022922 B =10236.749004 C =11202.005635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.013 4.013 3 Si 0.909 3.091 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.242 4.242 8 H 0.071 0.929 9 N -0.728 5.728 10 C 0.162 3.838 11 C -0.110 4.110 12 C -0.199 4.199 13 C 0.140 3.860 14 N -0.726 5.726 15 C 0.507 3.493 16 O -0.536 6.536 17 C -0.137 4.137 18 C -0.071 4.071 19 H 0.081 0.919 20 C -0.095 4.095 21 C -0.143 4.143 22 C -0.170 4.170 23 C -0.088 4.088 24 C -0.116 4.116 25 H 0.256 0.744 26 H 0.385 0.615 27 H 0.028 0.972 28 H 0.036 0.964 29 H 0.113 0.887 30 H 0.111 0.889 31 H 0.088 0.912 32 H 0.070 0.930 33 H 0.398 0.602 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.068 0.932 38 H 0.101 0.899 39 H 0.098 0.902 40 H 0.069 0.931 41 H 0.071 0.929 42 H 0.065 0.935 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.770 -24.757 -5.278 27.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.209 4.209 3 Si 0.740 3.260 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.373 4.373 8 H 0.089 0.911 9 N -0.372 5.372 10 C 0.035 3.965 11 C -0.129 4.129 12 C -0.219 4.219 13 C 0.018 3.982 14 N -0.378 5.378 15 C 0.293 3.707 16 O -0.413 6.413 17 C -0.177 4.177 18 C -0.090 4.090 19 H 0.099 0.901 20 C -0.131 4.131 21 C -0.161 4.161 22 C -0.188 4.188 23 C -0.125 4.125 24 C -0.154 4.154 25 H 0.066 0.934 26 H 0.218 0.782 27 H 0.045 0.955 28 H 0.053 0.947 29 H 0.131 0.869 30 H 0.129 0.871 31 H 0.106 0.894 32 H 0.088 0.912 33 H 0.232 0.768 34 H 0.111 0.889 35 H 0.111 0.889 36 H 0.111 0.889 37 H 0.086 0.914 38 H 0.119 0.881 39 H 0.116 0.884 40 H 0.087 0.913 41 H 0.090 0.910 42 H 0.083 0.917 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 11.239 -23.975 -5.807 27.108 hybrid contribution -0.151 0.640 0.335 0.738 sum 11.087 -23.335 -5.472 26.408 Atomic orbital electron populations 1.69651 1.05141 1.25852 1.57562 1.24758 0.95563 0.97758 1.02852 0.86234 0.78514 0.83317 0.77935 1.21138 1.21637 1.21212 1.19205 0.91068 0.83995 1.42994 0.91115 1.42264 1.05895 0.99503 1.89541 1.20006 0.92989 0.84762 0.98729 1.23293 0.99084 0.94770 0.95785 1.22596 0.98861 1.02069 0.98340 1.20549 0.94016 0.84233 0.99438 1.46098 1.30804 1.15258 1.45603 1.20697 0.80109 0.90199 0.79676 1.90703 1.62375 1.48199 1.39976 1.21774 0.98614 0.94931 1.02346 1.20953 0.93357 0.95057 0.99590 0.90061 1.20653 0.92195 1.01756 0.98532 1.22075 0.98207 0.97474 0.98320 1.21934 0.99654 0.96121 1.01082 1.20407 0.95880 0.97032 0.99200 1.21678 0.98021 0.96351 0.99312 0.93413 0.78166 0.95479 0.94652 0.86929 0.87123 0.89381 0.91210 0.76841 0.88933 0.88914 0.88921 0.91355 0.88134 0.88377 0.91291 0.91034 0.91674 0.91686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.65 13.06 55.49 0.72 -27.93 16 2 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 3 Si 0.91 22.81 29.55 -169.99 -5.02 17.79 16 4 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 6 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 7 C -0.24 -6.94 9.99 -15.06 -0.15 -7.09 16 8 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 9 N -0.73 -18.94 5.59 -61.09 -0.34 -19.28 16 10 C 0.16 3.32 6.35 -5.20 -0.03 3.29 16 11 C -0.11 -1.78 9.63 -36.03 -0.35 -2.13 16 12 C -0.20 -2.69 9.63 -36.03 -0.35 -3.04 16 13 C 0.14 1.98 5.76 -5.20 -0.03 1.95 16 14 N -0.73 -8.03 5.55 -61.47 -0.34 -8.38 16 15 C 0.51 6.11 7.59 -10.98 -0.08 6.03 16 16 O -0.54 -8.77 14.10 5.56 0.08 -8.69 16 17 C -0.14 -1.09 5.17 -27.88 -0.14 -1.24 16 18 C -0.07 -0.64 1.87 -90.40 -0.17 -0.81 16 19 H 0.08 0.89 7.93 -51.93 -0.41 0.48 16 20 C -0.09 -0.99 5.06 -28.18 -0.14 -1.13 16 21 C -0.14 -1.41 9.80 -35.85 -0.35 -1.76 16 22 C -0.17 -1.48 9.78 -35.85 -0.35 -1.84 16 23 C -0.09 -0.65 6.12 -28.18 -0.17 -0.82 16 24 C -0.12 -0.82 5.30 -26.52 -0.14 -0.96 16 25 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 26 H 0.38 10.45 7.66 -40.82 -0.31 10.14 16 27 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.04 0.74 5.30 -51.93 -0.27 0.47 16 29 H 0.11 1.73 8.06 -52.49 -0.42 1.30 16 30 H 0.11 1.23 8.06 -52.49 -0.42 0.81 16 31 H 0.09 1.46 5.30 -51.93 -0.28 1.19 16 32 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.40 3.14 8.46 -40.82 -0.35 2.80 16 34 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.09 0.59 8.09 -51.93 -0.42 0.17 16 36 H 0.09 1.22 6.31 -51.93 -0.33 0.89 16 37 H 0.07 0.65 8.06 -51.93 -0.42 0.24 16 38 H 0.10 0.94 8.06 -52.48 -0.42 0.51 16 39 H 0.10 0.75 8.06 -52.49 -0.42 0.33 16 40 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 43 H 0.06 0.44 8.13 -51.93 -0.42 0.02 16 LS Contribution 349.18 15.07 5.26 5.26 Total: -1.00 -33.13 349.18 -9.18 -42.31 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: -6.98 Total: 8.95 kcal Atomic # 6 Polarization: -7.47 SS G_CDS: -2.56 Total: -10.03 kcal Atomic # 7 Polarization: -55.63 SS G_CDS: 0.04 Total: -55.58 kcal Atomic # 8 Polarization: -8.77 SS G_CDS: 0.08 Total: -8.69 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -5.02 Total: 17.79 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.13 -9.18 -42.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321188955.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.099 kcal (2) G-P(sol) polarization free energy of solvation -33.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds