Wall clock time and date at job start Tue Mar 31 2020 00:44:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 119.99753 * 2 1 4 4 H 1.48499 * 109.47518 * 240.00086 * 3 2 1 5 5 H 1.48503 * 109.46978 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47066 * 119.99933 * 3 2 1 7 7 C 1.38813 * 120.00569 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00316 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99636 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99926 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.47405 * 179.97438 * 10 9 7 12 12 C 1.31001 * 119.99908 * 127.00262 * 11 10 9 13 13 C 1.50696 * 120.00052 * 7.56244 * 12 11 10 14 14 N 1.46500 * 109.46861 * 127.15386 * 13 12 11 15 15 C 1.34781 * 119.99797 * 180.02562 * 14 13 12 16 16 O 1.21275 * 120.00243 * 0.02562 * 15 14 13 17 17 C 1.50702 * 119.99749 * 180.02562 * 15 14 13 18 18 C 1.53003 * 109.46900 * 180.02562 * 17 15 14 19 19 H 1.09002 * 109.63619 * 305.41748 * 18 17 15 20 20 C 1.53015 * 109.64545 * 66.05202 * 18 17 15 21 21 C 1.50070 * 110.14885 * 169.12009 * 20 18 17 22 22 C 1.29253 * 124.01609 * 342.74144 * 21 20 18 23 23 C 1.50067 * 124.21929 * 0.72714 * 22 21 20 24 24 C 1.53016 * 110.03721 * 342.64931 * 23 22 21 25 25 H 0.96996 * 120.00731 * 0.02562 * 1 2 3 26 26 H 0.96998 * 120.00063 * 359.97438 * 9 7 2 27 27 H 1.09002 * 109.47324 * 59.99828 * 10 9 7 28 28 H 1.08997 * 109.47332 * 299.99916 * 10 9 7 29 29 H 1.07999 * 119.99817 * 307.01254 * 11 10 9 30 30 H 1.07998 * 120.00111 * 187.56177 * 12 11 10 31 31 H 1.09005 * 109.46982 * 7.15791 * 13 12 11 32 32 H 1.08995 * 109.47287 * 247.15755 * 13 12 11 33 33 H 0.97000 * 120.00746 * 0.02562 * 14 13 12 34 34 H 1.08998 * 109.47290 * 60.00405 * 17 15 14 35 35 H 1.09004 * 109.47003 * 299.99748 * 17 15 14 36 36 H 1.08998 * 109.36515 * 289.32936 * 20 18 17 37 37 H 1.09000 * 109.35881 * 48.91556 * 20 18 17 38 38 H 1.08003 * 117.96150 * 162.89193 * 21 20 18 39 39 H 1.08001 * 117.81593 * 180.60164 * 22 21 20 40 40 H 1.09006 * 109.35788 * 222.51164 * 23 22 21 41 41 H 1.08993 * 109.35760 * 102.79105 * 23 22 21 42 42 H 1.08998 * 109.64517 * 169.18960 * 24 23 22 43 43 H 1.08996 * 109.64716 * 289.60729 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6966 -1.2125 5 1 1.2850 2.7465 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0104 -1.2021 -0.0005 8 1 3.0904 -1.2020 -0.0001 9 7 1.3257 -2.3880 -0.0016 10 6 2.0583 -3.6567 -0.0016 11 6 1.0791 -4.8022 -0.0022 12 6 1.1729 -5.7436 -0.9084 13 6 2.3552 -5.7753 -1.8423 14 7 2.9769 -7.1011 -1.7981 15 6 4.0594 -7.3635 -2.5570 16 8 4.5190 -6.5019 -3.2762 17 6 4.6986 -8.7275 -2.5119 18 6 5.8998 -8.7593 -3.4590 19 1 5.5871 -8.4540 -4.4576 20 6 6.9864 -7.8132 -2.9437 21 6 8.2622 -8.0283 -3.7041 22 6 8.5119 -9.0783 -4.4152 23 6 7.5577 -10.2227 -4.5944 24 6 6.4777 -10.1793 -3.5113 25 1 -0.4851 0.8399 -0.0004 26 1 0.3557 -2.3881 -0.0016 27 1 2.6843 -3.7148 0.8888 28 1 2.6856 -3.7141 -0.8911 29 1 0.3000 -4.8470 0.7443 30 1 0.4030 -6.4969 -0.9863 31 1 3.0815 -5.0230 -1.5347 32 1 2.0215 -5.5642 -2.8582 33 1 2.6096 -7.7902 -1.2226 34 1 3.9723 -9.4795 -2.8203 35 1 5.0317 -8.9392 -1.4958 36 1 6.6585 -6.7818 -3.0728 37 1 7.1602 -8.0051 -1.8849 38 1 9.0188 -7.2593 -3.6517 39 1 9.4684 -9.1337 -4.9137 40 1 8.1040 -11.1632 -4.5225 41 1 7.0885 -10.1516 -5.5756 42 1 5.6863 -10.8883 -3.7544 43 1 6.9156 -10.4357 -2.5467 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321188955.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:44:09 Heat of formation + Delta-G solvation = -28.867183 kcal Electronic energy + Delta-G solvation = -20683.657870 eV Core-core repulsion = 17535.194937 eV Total energy + Delta-G solvation = -3148.462933 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.02332 -39.19232 -37.91710 -36.07486 -34.41220 -33.69043 -32.32674 -31.59092 -29.08022 -27.52522 -26.10534 -24.41178 -24.05262 -22.37984 -21.23592 -20.06038 -19.02726 -18.79483 -17.68141 -17.53901 -16.89362 -16.56437 -16.48276 -15.78581 -15.47387 -15.21293 -15.07490 -14.84925 -14.33221 -14.20423 -14.02628 -13.74304 -13.52858 -13.28783 -13.16389 -12.95384 -12.84865 -12.71740 -12.39597 -12.23671 -11.91865 -11.67460 -11.61254 -11.48319 -11.03156 -10.99724 -10.77891 -10.26683 -9.89939 -9.82875 -9.01389 -7.99316 -5.29061 1.05953 1.43546 1.45050 1.48519 1.54806 1.72941 2.42795 2.55037 3.33777 3.71817 3.78626 3.82370 3.90103 4.12139 4.15159 4.16513 4.29873 4.34795 4.44598 4.50701 4.60672 4.61854 4.76356 4.80183 4.84910 4.86099 4.89872 4.98068 5.05882 5.08836 5.13870 5.25532 5.39595 5.43063 5.46758 5.54514 5.58215 5.80437 5.86469 6.10810 6.23341 6.65895 7.29162 7.36792 8.02859 8.27856 9.23867 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.023743 B = 0.002735 C = 0.002499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.022922 B =10236.749004 C =11202.005635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.073 4.073 3 Si 0.976 3.024 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.276 1.276 7 C -0.253 4.253 8 H 0.072 0.928 9 N -0.742 5.742 10 C 0.161 3.839 11 C -0.137 4.137 12 C -0.157 4.157 13 C 0.140 3.860 14 N -0.712 5.712 15 C 0.500 3.500 16 O -0.586 6.586 17 C -0.126 4.126 18 C -0.070 4.070 19 H 0.056 0.944 20 C -0.093 4.093 21 C -0.169 4.169 22 C -0.162 4.162 23 C -0.093 4.093 24 C -0.110 4.110 25 H 0.254 0.746 26 H 0.376 0.624 27 H 0.024 0.976 28 H 0.031 0.969 29 H 0.125 0.875 30 H 0.151 0.849 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.418 0.582 34 H 0.126 0.874 35 H 0.118 0.882 36 H 0.055 0.945 37 H 0.074 0.926 38 H 0.095 0.905 39 H 0.108 0.892 40 H 0.088 0.912 41 H 0.073 0.927 42 H 0.087 0.913 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.007 -27.596 -5.134 30.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.266 4.266 3 Si 0.804 3.196 4 H -0.206 1.206 5 H -0.216 1.216 6 H -0.202 1.202 7 C -0.385 4.385 8 H 0.090 0.910 9 N -0.384 5.384 10 C 0.036 3.964 11 C -0.156 4.156 12 C -0.176 4.176 13 C 0.017 3.983 14 N -0.365 5.365 15 C 0.289 3.711 16 O -0.467 6.467 17 C -0.165 4.165 18 C -0.089 4.089 19 H 0.075 0.925 20 C -0.130 4.130 21 C -0.187 4.187 22 C -0.180 4.180 23 C -0.130 4.130 24 C -0.147 4.147 25 H 0.062 0.938 26 H 0.208 0.792 27 H 0.041 0.959 28 H 0.048 0.952 29 H 0.143 0.857 30 H 0.169 0.831 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.255 0.745 34 H 0.144 0.856 35 H 0.136 0.864 36 H 0.074 0.926 37 H 0.093 0.907 38 H 0.113 0.887 39 H 0.126 0.874 40 H 0.107 0.893 41 H 0.092 0.908 42 H 0.105 0.895 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 11.493 -26.877 -5.636 29.769 hybrid contribution -0.145 1.424 0.214 1.447 sum 11.348 -25.453 -5.422 28.391 Atomic orbital electron populations 1.69801 1.06556 1.26375 1.59024 1.25607 0.96511 1.01182 1.03288 0.85186 0.77268 0.78924 0.78231 1.20567 1.21647 1.20156 1.19595 0.91444 0.85406 1.42020 0.90962 1.42473 1.05694 1.00788 1.89488 1.20072 0.93784 0.84471 0.98099 1.23032 0.99531 0.94643 0.98430 1.22808 0.98253 1.01206 0.95318 1.20312 0.93833 0.85385 0.98807 1.45912 1.30489 1.14392 1.45735 1.21543 0.79676 0.91340 0.78548 1.90698 1.63712 1.50134 1.42118 1.21814 0.98490 0.92645 1.03580 1.20923 0.93379 0.96144 0.98478 0.92496 1.20577 0.93079 1.00167 0.99190 1.22113 0.98276 0.98363 0.99992 1.22214 1.00298 0.96001 0.99458 1.20517 0.95907 0.97090 0.99490 1.21661 0.98445 0.94915 0.99667 0.93773 0.79214 0.95862 0.95157 0.85749 0.83113 0.92386 0.92431 0.74476 0.85632 0.86421 0.92596 0.90736 0.88661 0.87444 0.89350 0.90844 0.89482 0.90828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.38 13.06 21.65 0.28 -60.09 16 2 C -0.07 -4.35 5.50 84.86 0.47 -3.88 16 3 Si 0.98 47.41 29.55 68.60 2.03 49.44 16 4 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 5 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 6 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 7 C -0.25 -14.79 9.99 84.03 0.84 -13.95 16 8 H 0.07 4.09 7.83 -2.91 -0.02 4.07 16 9 N -0.74 -39.45 5.59 -347.18 -1.94 -41.39 16 10 C 0.16 6.75 6.35 85.63 0.54 7.30 16 11 C -0.14 -4.32 9.63 25.64 0.25 -4.07 16 12 C -0.16 -3.89 9.63 25.64 0.25 -3.64 16 13 C 0.14 3.89 5.76 85.63 0.49 4.39 16 14 N -0.71 -14.46 5.55 -466.79 -2.59 -17.05 16 15 C 0.50 11.61 7.59 87.66 0.67 12.28 16 16 O -0.59 -19.92 14.10 -3.01 -0.04 -19.96 16 17 C -0.13 -1.67 5.17 29.85 0.15 -1.52 16 18 C -0.07 -1.19 1.87 -10.65 -0.02 -1.21 16 19 H 0.06 1.24 7.93 -2.39 -0.02 1.23 16 20 C -0.09 -1.98 5.06 29.66 0.15 -1.83 16 21 C -0.17 -3.39 9.80 27.22 0.27 -3.12 16 22 C -0.16 -2.65 9.78 27.22 0.27 -2.39 16 23 C -0.09 -1.14 6.12 29.66 0.18 -0.96 16 24 C -0.11 -1.21 5.30 30.73 0.16 -1.05 16 25 H 0.25 15.26 8.31 -92.71 -0.77 14.49 16 26 H 0.38 20.92 7.66 -92.71 -0.71 20.21 16 27 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.03 1.32 5.30 -2.39 -0.01 1.31 16 29 H 0.12 3.65 8.06 -2.91 -0.02 3.62 16 30 H 0.15 2.66 8.06 -2.91 -0.02 2.63 16 31 H 0.06 1.99 5.30 -2.38 -0.01 1.98 16 32 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.42 5.14 8.46 -92.71 -0.78 4.35 16 34 H 0.13 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.12 1.05 8.09 -2.39 -0.02 1.03 16 36 H 0.06 1.60 6.31 -2.39 -0.02 1.58 16 37 H 0.07 1.41 8.06 -2.39 -0.02 1.39 16 38 H 0.10 1.90 8.06 -2.91 -0.02 1.88 16 39 H 0.11 1.52 8.06 -2.91 -0.02 1.49 16 40 H 0.09 0.78 8.14 -2.38 -0.02 0.76 16 41 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 43 H 0.07 0.73 8.13 -2.39 -0.02 0.71 16 Total: -1.00 -74.74 349.18 1.90 -72.84 By element: Atomic # 1 Polarization: 30.38 SS G_CDS: -0.50 Total: 29.89 kcal Atomic # 6 Polarization: -18.33 SS G_CDS: 4.66 Total: -13.66 kcal Atomic # 7 Polarization: -114.29 SS G_CDS: -4.25 Total: -118.53 kcal Atomic # 8 Polarization: -19.92 SS G_CDS: -0.04 Total: -19.96 kcal Atomic # 14 Polarization: 47.41 SS G_CDS: 2.03 Total: 49.44 kcal Total: -74.74 1.90 -72.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321188955.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.968 kcal (2) G-P(sol) polarization free energy of solvation -74.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds