Wall clock time and date at job start Tue Mar 31 2020 00:32:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 119.99981 * 2 1 4 4 H 1.48493 * 109.47326 * 89.99918 * 3 2 1 5 5 H 1.48506 * 109.46545 * 209.99668 * 3 2 1 6 6 H 1.48498 * 109.47210 * 329.99379 * 3 2 1 7 7 C 1.38812 * 119.99535 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00285 * 0.02562 * 7 2 1 9 9 N 1.36935 * 119.99632 * 180.02562 * 7 2 1 10 10 C 1.46499 * 119.99938 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47337 * 179.97438 * 10 9 7 12 12 H 1.08999 * 109.46773 * 64.99984 * 11 10 9 13 13 N 1.46494 * 109.47238 * 305.00142 * 11 10 9 14 14 C 1.34781 * 119.99963 * 154.99654 * 13 11 10 15 15 O 1.21285 * 119.99765 * 0.02562 * 14 13 11 16 16 C 1.50698 * 120.00131 * 180.02562 * 14 13 11 17 17 H 1.09008 * 115.52401 * 325.58183 * 16 14 13 18 18 C 1.52994 * 117.46446 * 111.08008 * 16 14 13 19 19 H 1.09004 * 119.29850 * 356.28768 * 18 16 14 20 20 C 1.54292 * 118.18285 * 201.24899 * 18 16 14 21 21 C 1.54884 * 104.16735 * 272.15687 * 20 18 16 22 22 C 1.54896 * 102.74914 * 37.94711 * 21 20 18 23 23 C 1.52993 * 117.46287 * 180.08837 * 16 14 13 24 24 H 1.09004 * 119.29773 * 4.63628 * 23 16 14 25 25 C 1.53001 * 109.47251 * 184.99980 * 11 10 9 26 26 C 1.53000 * 117.49783 * 248.75084 * 25 11 10 27 27 C 1.53005 * 117.49656 * 180.09028 * 25 11 10 28 28 H 0.97005 * 119.99717 * 0.02562 * 1 2 3 29 29 H 0.96999 * 120.00077 * 359.97438 * 9 7 2 30 30 H 1.08993 * 109.47502 * 300.00081 * 10 9 7 31 31 H 1.09005 * 109.47136 * 59.99839 * 10 9 7 32 32 H 0.96997 * 120.00284 * 335.00289 * 13 11 10 33 33 H 1.09006 * 110.49679 * 153.49142 * 20 18 16 34 34 H 1.09004 * 110.62007 * 30.88235 * 20 18 16 35 35 H 1.08994 * 110.75808 * 279.63567 * 21 20 18 36 36 H 1.09001 * 110.91733 * 156.33615 * 21 20 18 37 37 H 1.09000 * 110.48828 * 203.37956 * 22 21 20 38 38 H 1.09002 * 110.59385 * 80.79431 * 22 21 20 39 39 H 1.08996 * 115.55179 * 34.42007 * 25 11 10 40 40 H 1.08996 * 117.50019 * 0.02562 * 26 25 11 41 41 H 1.09004 * 117.49867 * 145.02506 * 26 25 11 42 42 H 1.09000 * 117.49462 * 214.98020 * 27 25 11 43 43 H 1.08994 * 117.50121 * 359.97438 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 1.4000 5 1 3.5478 1.4400 -0.7000 6 1 1.4478 2.6526 -0.7002 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0011 10 6 4.1120 -2.4710 0.0011 11 6 5.6163 -2.1915 0.0011 12 1 5.8941 -1.6981 0.9325 13 7 5.9517 -1.3234 -1.1303 14 6 7.0497 -0.5434 -1.0789 15 8 7.7603 -0.5606 -0.0961 16 6 7.3944 0.3501 -2.2424 17 1 7.1471 -0.0454 -3.2277 18 6 7.2641 1.8603 -2.0353 19 1 6.8736 2.2373 -1.0900 20 6 7.1169 2.7569 -3.2823 21 6 8.5756 3.0707 -3.6978 22 6 9.3055 1.7330 -3.4200 23 6 8.6547 1.2093 -2.1231 24 1 9.2970 1.0957 -1.2497 25 6 6.3802 -3.5111 -0.1246 26 6 7.1792 -3.9835 1.0917 27 6 7.9087 -3.4438 -0.1411 28 1 -0.4850 0.8401 -0.0004 29 1 3.8646 -0.3622 0.0007 30 1 3.8484 -3.0428 0.8907 31 1 3.8490 -3.0424 -0.8892 32 1 5.3836 -1.3098 -1.9164 33 1 6.5857 3.6751 -3.0317 34 1 6.5995 2.2234 -4.0798 35 1 8.9886 3.8708 -3.0836 36 1 8.6320 3.3291 -4.7552 37 1 10.3715 1.9041 -3.2698 38 1 9.1443 1.0311 -4.2382 39 1 5.9034 -4.2736 -0.7406 40 1 7.1602 -3.3544 1.9815 41 1 7.2283 -5.0568 1.2756 42 1 8.4374 -4.1622 -0.7677 43 1 8.3700 -2.4594 -0.0629 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322973708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:32:49 Heat of formation + Delta-G solvation = 20.495018 kcal Electronic energy + Delta-G solvation = -22160.817549 eV Core-core repulsion = 19014.495121 eV Total energy + Delta-G solvation = -3146.322427 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.48458 -38.93127 -37.00531 -35.17409 -33.45748 -31.93575 -31.25854 -28.57151 -28.38762 -24.61165 -23.58501 -22.17655 -21.34610 -21.02101 -20.16864 -20.03561 -19.77591 -17.92157 -17.14815 -16.34869 -15.41471 -15.17578 -15.06792 -14.87078 -14.32942 -13.77763 -13.60634 -13.31572 -13.24931 -12.92691 -12.75101 -12.25270 -11.93445 -11.64434 -11.50207 -11.34131 -11.27509 -11.24369 -11.07507 -11.02005 -10.88531 -10.22590 -10.19065 -10.16543 -9.97529 -9.94084 -9.63278 -9.51051 -8.96032 -8.74423 -7.29203 -5.80776 -3.17033 2.56762 3.18692 3.34516 3.39144 3.43065 3.65367 4.04241 4.43048 4.55090 4.55915 4.60658 4.74847 5.02699 5.04549 5.05617 5.11833 5.22099 5.24813 5.29178 5.35415 5.42628 5.48838 5.54741 5.59086 5.65679 5.75510 5.81046 5.83548 5.90038 5.91280 5.96135 6.06650 6.15106 6.21338 6.28707 6.39841 6.45253 6.56880 6.82954 7.75513 7.94484 8.37570 8.42989 9.16445 9.88675 10.08136 11.37348 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.011406 B = 0.006835 C = 0.004494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2454.326756 B = 4095.596349 C = 6228.781895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.007 3.993 3 Si 0.882 3.118 4 H -0.285 1.285 5 H -0.276 1.276 6 H -0.291 1.291 7 C -0.246 4.246 8 H 0.091 0.909 9 N -0.755 5.755 10 C 0.153 3.847 11 C 0.164 3.836 12 H 0.087 0.913 13 N -0.706 5.706 14 C 0.546 3.454 15 O -0.545 6.545 16 C -0.162 4.162 17 H 0.119 0.881 18 C -0.136 4.136 19 H 0.114 0.886 20 C -0.097 4.097 21 C -0.123 4.123 22 C -0.096 4.096 23 C -0.132 4.132 24 H 0.121 0.879 25 C -0.163 4.163 26 C -0.171 4.171 27 C -0.185 4.185 28 H 0.260 0.740 29 H 0.363 0.637 30 H 0.044 0.956 31 H 0.033 0.967 32 H 0.405 0.595 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.068 0.932 39 H 0.105 0.895 40 H 0.094 0.906 41 H 0.091 0.909 42 H 0.083 0.917 43 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.021 0.202 -7.315 20.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.189 4.189 3 Si 0.712 3.288 4 H -0.211 1.211 5 H -0.202 1.202 6 H -0.217 1.217 7 C -0.376 4.376 8 H 0.109 0.891 9 N -0.401 5.401 10 C 0.025 3.975 11 C 0.060 3.940 12 H 0.105 0.895 13 N -0.356 5.356 14 C 0.332 3.668 15 O -0.424 6.424 16 C -0.183 4.183 17 H 0.137 0.863 18 C -0.155 4.155 19 H 0.132 0.868 20 C -0.135 4.135 21 C -0.160 4.160 22 C -0.134 4.134 23 C -0.150 4.150 24 H 0.139 0.861 25 C -0.183 4.183 26 C -0.208 4.208 27 C -0.222 4.222 28 H 0.070 0.930 29 H 0.196 0.804 30 H 0.062 0.938 31 H 0.051 0.949 32 H 0.240 0.760 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.087 0.913 39 H 0.123 0.877 40 H 0.112 0.888 41 H 0.109 0.891 42 H 0.102 0.898 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 19.257 0.106 -6.609 20.360 hybrid contribution 0.051 1.034 -0.330 1.087 sum 19.308 1.141 -6.939 20.549 Atomic orbital electron populations 1.69703 1.05081 1.25853 1.57360 1.24655 0.95199 0.97143 1.01886 0.86581 0.79242 0.85053 0.77898 1.21148 1.20183 1.21689 1.19042 0.80472 0.94776 1.43306 0.89112 1.42691 1.04086 1.02081 1.91242 1.20896 0.86928 0.89837 0.99809 1.20872 0.95196 0.88111 0.89833 0.89477 1.45954 1.26310 1.42400 1.20906 1.19515 0.80550 0.79481 0.87210 1.90596 1.50709 1.67440 1.33643 1.22366 1.04203 0.92855 0.98905 0.86329 1.23223 1.01068 0.90609 1.00588 0.86812 1.22009 0.96909 0.98927 0.95646 1.22689 0.94831 0.97429 1.01054 1.22001 0.99423 0.96423 0.95528 1.23210 0.89885 1.01575 1.00352 0.86092 1.22626 0.93739 0.99070 1.02836 1.22902 1.04439 1.00747 0.92725 1.23265 0.93999 1.04069 1.00837 0.93021 0.80424 0.93786 0.94900 0.76005 0.90820 0.91002 0.91208 0.91225 0.91000 0.91289 0.87708 0.88780 0.89103 0.89847 0.86535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.11 13.97 55.49 0.78 -28.33 16 2 C 0.01 0.21 5.50 -17.43 -0.10 0.11 16 3 Si 0.88 22.16 27.74 -169.99 -4.71 17.44 16 4 H -0.28 -7.25 7.11 56.52 0.40 -6.85 16 5 H -0.28 -6.48 6.52 56.52 0.37 -6.12 16 6 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 7 C -0.25 -6.88 10.47 -15.06 -0.16 -7.04 16 8 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 9 N -0.75 -17.59 5.24 -59.91 -0.31 -17.90 16 10 C 0.15 2.87 5.80 -4.04 -0.02 2.84 16 11 C 0.16 2.66 2.43 -67.93 -0.17 2.49 16 12 H 0.09 1.59 7.34 -51.93 -0.38 1.20 16 13 N -0.71 -10.83 4.50 -53.81 -0.24 -11.07 16 14 C 0.55 8.47 6.95 -10.98 -0.08 8.39 16 15 O -0.55 -9.77 13.35 5.55 0.07 -9.70 16 16 C -0.16 -2.06 5.74 -91.78 -0.53 -2.59 16 17 H 0.12 1.29 8.14 -51.92 -0.42 0.87 16 18 C -0.14 -1.71 6.64 -89.53 -0.59 -2.30 16 19 H 0.11 1.61 8.14 -51.93 -0.42 1.19 16 20 C -0.10 -0.99 6.63 -25.06 -0.17 -1.16 16 21 C -0.12 -1.03 6.91 -24.74 -0.17 -1.20 16 22 C -0.10 -0.85 6.63 -25.07 -0.17 -1.02 16 23 C -0.13 -1.52 6.39 -89.55 -0.57 -2.09 16 24 H 0.12 1.54 7.79 -51.93 -0.40 1.13 16 25 C -0.16 -2.25 5.36 -90.62 -0.49 -2.74 16 26 C -0.17 -2.20 10.18 -26.69 -0.27 -2.47 16 27 C -0.18 -2.49 9.74 -26.69 -0.26 -2.75 16 28 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 29 H 0.36 8.46 5.20 -40.82 -0.21 8.25 16 30 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.41 5.87 8.60 -40.82 -0.35 5.52 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.10 1.35 8.11 -51.93 -0.42 0.93 16 40 H 0.09 1.27 8.05 -51.93 -0.42 0.85 16 41 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 42 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.12 1.82 5.02 -51.93 -0.26 1.56 16 LS Contribution 345.04 15.07 5.20 5.20 Total: -1.00 -31.69 345.04 -10.07 -41.76 By element: Atomic # 1 Polarization: 21.23 SS G_CDS: -7.11 Total: 14.12 kcal Atomic # 6 Polarization: -7.79 SS G_CDS: -3.73 Total: -11.52 kcal Atomic # 7 Polarization: -57.52 SS G_CDS: 0.22 Total: -57.30 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: 0.07 Total: -9.70 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -4.71 Total: 17.44 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.69 -10.07 -41.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322973708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.254 kcal (2) G-P(sol) polarization free energy of solvation -31.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds