Wall clock time and date at job start Tue Mar 31 2020 00:32:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 119.99981 * 2 1 4 4 H 1.48493 * 109.47326 * 89.99918 * 3 2 1 5 5 H 1.48506 * 109.46545 * 209.99668 * 3 2 1 6 6 H 1.48498 * 109.47210 * 329.99379 * 3 2 1 7 7 C 1.38812 * 119.99535 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00285 * 0.02562 * 7 2 1 9 9 N 1.36935 * 119.99632 * 180.02562 * 7 2 1 10 10 C 1.46499 * 119.99938 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47337 * 179.97438 * 10 9 7 12 12 H 1.08999 * 109.46773 * 64.99984 * 11 10 9 13 13 N 1.46494 * 109.47238 * 305.00142 * 11 10 9 14 14 C 1.34781 * 119.99963 * 154.99654 * 13 11 10 15 15 O 1.21285 * 119.99765 * 0.02562 * 14 13 11 16 16 C 1.50698 * 120.00131 * 180.02562 * 14 13 11 17 17 H 1.09008 * 115.52401 * 325.58183 * 16 14 13 18 18 C 1.52994 * 117.46446 * 111.08008 * 16 14 13 19 19 H 1.09004 * 119.29850 * 356.28768 * 18 16 14 20 20 C 1.54292 * 118.18285 * 201.24899 * 18 16 14 21 21 C 1.54884 * 104.16735 * 272.15687 * 20 18 16 22 22 C 1.54896 * 102.74914 * 37.94711 * 21 20 18 23 23 C 1.52993 * 117.46287 * 180.08837 * 16 14 13 24 24 H 1.09004 * 119.29773 * 4.63628 * 23 16 14 25 25 C 1.53001 * 109.47251 * 184.99980 * 11 10 9 26 26 C 1.53000 * 117.49783 * 248.75084 * 25 11 10 27 27 C 1.53005 * 117.49656 * 180.09028 * 25 11 10 28 28 H 0.97005 * 119.99717 * 0.02562 * 1 2 3 29 29 H 0.96999 * 120.00077 * 359.97438 * 9 7 2 30 30 H 1.08993 * 109.47502 * 300.00081 * 10 9 7 31 31 H 1.09005 * 109.47136 * 59.99839 * 10 9 7 32 32 H 0.96997 * 120.00284 * 335.00289 * 13 11 10 33 33 H 1.09006 * 110.49679 * 153.49142 * 20 18 16 34 34 H 1.09004 * 110.62007 * 30.88235 * 20 18 16 35 35 H 1.08994 * 110.75808 * 279.63567 * 21 20 18 36 36 H 1.09001 * 110.91733 * 156.33615 * 21 20 18 37 37 H 1.09000 * 110.48828 * 203.37956 * 22 21 20 38 38 H 1.09002 * 110.59385 * 80.79431 * 22 21 20 39 39 H 1.08996 * 115.55179 * 34.42007 * 25 11 10 40 40 H 1.08996 * 117.50019 * 0.02562 * 26 25 11 41 41 H 1.09004 * 117.49867 * 145.02506 * 26 25 11 42 42 H 1.09000 * 117.49462 * 214.98020 * 27 25 11 43 43 H 1.08994 * 117.50121 * 359.97438 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 1.4000 5 1 3.5478 1.4400 -0.7000 6 1 1.4478 2.6526 -0.7002 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0011 10 6 4.1120 -2.4710 0.0011 11 6 5.6163 -2.1915 0.0011 12 1 5.8941 -1.6981 0.9325 13 7 5.9517 -1.3234 -1.1303 14 6 7.0497 -0.5434 -1.0789 15 8 7.7603 -0.5606 -0.0961 16 6 7.3944 0.3501 -2.2424 17 1 7.1471 -0.0454 -3.2277 18 6 7.2641 1.8603 -2.0353 19 1 6.8736 2.2373 -1.0900 20 6 7.1169 2.7569 -3.2823 21 6 8.5756 3.0707 -3.6978 22 6 9.3055 1.7330 -3.4200 23 6 8.6547 1.2093 -2.1231 24 1 9.2970 1.0957 -1.2497 25 6 6.3802 -3.5111 -0.1246 26 6 7.1792 -3.9835 1.0917 27 6 7.9087 -3.4438 -0.1411 28 1 -0.4850 0.8401 -0.0004 29 1 3.8646 -0.3622 0.0007 30 1 3.8484 -3.0428 0.8907 31 1 3.8490 -3.0424 -0.8892 32 1 5.3836 -1.3098 -1.9164 33 1 6.5857 3.6751 -3.0317 34 1 6.5995 2.2234 -4.0798 35 1 8.9886 3.8708 -3.0836 36 1 8.6320 3.3291 -4.7552 37 1 10.3715 1.9041 -3.2698 38 1 9.1443 1.0311 -4.2382 39 1 5.9034 -4.2736 -0.7406 40 1 7.1602 -3.3544 1.9815 41 1 7.2283 -5.0568 1.2756 42 1 8.4374 -4.1622 -0.7677 43 1 8.3700 -2.4594 -0.0629 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322973708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:32:48 Heat of formation + Delta-G solvation = 1.314842 kcal Electronic energy + Delta-G solvation = -22161.649264 eV Core-core repulsion = 19014.495121 eV Total energy + Delta-G solvation = -3147.154142 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.58125 -39.98061 -38.20927 -36.77940 -35.02185 -33.39095 -32.65211 -30.14224 -29.16230 -26.11923 -24.97202 -23.24262 -23.00936 -21.89603 -21.35374 -21.12964 -20.67079 -19.82936 -18.41891 -17.53974 -16.79215 -16.49058 -16.24698 -16.12542 -15.73444 -15.15765 -14.86317 -14.79636 -14.54784 -14.05571 -13.95041 -13.73858 -13.56222 -12.95973 -12.76210 -12.62953 -12.52687 -12.30301 -12.25684 -12.09248 -12.00639 -11.85595 -11.71221 -11.29772 -11.17634 -11.09730 -11.07018 -10.91363 -10.59204 -10.01399 -9.35345 -8.05955 -5.39526 1.32953 1.35841 1.40838 1.42588 2.02969 2.43576 2.68474 2.97091 3.26225 3.38687 3.51424 3.70361 3.73211 3.82343 4.00064 4.03975 4.12101 4.16525 4.23842 4.27098 4.38633 4.46513 4.50439 4.57525 4.66333 4.79826 4.80637 4.86430 4.95901 5.02082 5.05047 5.12868 5.18830 5.20227 5.25852 5.26568 5.34253 5.47646 5.52701 5.72970 6.17441 6.54287 7.03153 7.21894 7.78148 7.96800 9.15259 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.011406 B = 0.006835 C = 0.004494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2454.326756 B = 4095.596349 C = 6228.781895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.979 5.979 2 C -0.056 4.056 3 Si 0.947 3.053 4 H -0.289 1.289 5 H -0.253 1.253 6 H -0.291 1.291 7 C -0.232 4.232 8 H 0.064 0.936 9 N -0.756 5.756 10 C 0.153 3.847 11 C 0.175 3.825 12 H 0.064 0.936 13 N -0.705 5.705 14 C 0.541 3.459 15 O -0.574 6.574 16 C -0.167 4.167 17 H 0.141 0.859 18 C -0.149 4.149 19 H 0.090 0.910 20 C -0.096 4.096 21 C -0.116 4.116 22 C -0.091 4.091 23 C -0.125 4.125 24 H 0.104 0.896 25 C -0.166 4.166 26 C -0.165 4.165 27 C -0.180 4.180 28 H 0.258 0.742 29 H 0.364 0.636 30 H 0.043 0.957 31 H 0.046 0.954 32 H 0.410 0.590 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.071 0.929 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.121 0.879 40 H 0.082 0.918 41 H 0.115 0.885 42 H 0.103 0.897 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.172 0.286 -8.961 22.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.630 5.630 2 C -0.248 4.248 3 Si 0.775 3.225 4 H -0.216 1.216 5 H -0.178 1.178 6 H -0.218 1.218 7 C -0.363 4.363 8 H 0.082 0.918 9 N -0.402 5.402 10 C 0.027 3.973 11 C 0.070 3.930 12 H 0.082 0.918 13 N -0.355 5.355 14 C 0.329 3.671 15 O -0.454 6.454 16 C -0.188 4.188 17 H 0.159 0.841 18 C -0.168 4.168 19 H 0.108 0.892 20 C -0.134 4.134 21 C -0.154 4.154 22 C -0.128 4.128 23 C -0.144 4.144 24 H 0.122 0.878 25 C -0.185 4.185 26 C -0.203 4.203 27 C -0.217 4.217 28 H 0.067 0.933 29 H 0.197 0.803 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.246 0.754 33 H 0.092 0.908 34 H 0.097 0.903 35 H 0.089 0.911 36 H 0.108 0.892 37 H 0.102 0.898 38 H 0.099 0.901 39 H 0.139 0.861 40 H 0.101 0.899 41 H 0.133 0.867 42 H 0.122 0.878 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 21.450 0.164 -8.269 22.990 hybrid contribution -0.619 0.906 0.256 1.127 sum 20.832 1.070 -8.012 22.345 Atomic orbital electron populations 1.69863 1.06906 1.26610 1.59602 1.25380 0.95965 1.00740 1.02706 0.85533 0.78821 0.80503 0.77675 1.21589 1.17752 1.21757 1.19035 0.82389 0.93643 1.41218 0.91841 1.42677 1.02598 1.03869 1.91064 1.21026 0.88229 0.87947 1.00112 1.20614 0.93527 0.89459 0.89362 0.91807 1.45947 1.26461 1.42370 1.20702 1.20015 0.80032 0.79388 0.87648 1.90587 1.51574 1.68266 1.35014 1.22414 1.05338 0.92464 0.98546 0.84111 1.23301 1.01945 0.90711 1.00854 0.89191 1.22059 0.98370 0.98388 0.94553 1.22681 0.93257 0.97136 1.02297 1.22039 0.99940 0.96697 0.94126 1.23279 0.89356 1.00398 1.01318 0.87807 1.22554 0.93871 0.98045 1.04073 1.22992 1.03375 1.01949 0.91972 1.23198 0.93476 1.03522 1.01539 0.93282 0.80313 0.93914 0.93614 0.75386 0.90816 0.90276 0.91070 0.89196 0.89757 0.90116 0.86086 0.89919 0.86703 0.87831 0.88754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.30 13.97 21.65 0.30 -62.00 16 2 C -0.06 -3.28 5.50 84.86 0.47 -2.81 16 3 Si 0.95 45.98 27.74 68.60 1.90 47.88 16 4 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 5 H -0.25 -11.15 6.52 99.48 0.65 -10.50 16 6 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 7 C -0.23 -13.04 10.47 84.03 0.88 -12.16 16 8 H 0.06 3.86 8.06 -2.91 -0.02 3.84 16 9 N -0.76 -34.78 5.24 -343.45 -1.80 -36.58 16 10 C 0.15 5.61 5.80 86.38 0.50 6.11 16 11 C 0.18 5.52 2.43 44.99 0.11 5.63 16 12 H 0.06 2.33 7.34 -2.39 -0.02 2.31 16 13 N -0.71 -20.84 4.50 -442.53 -1.99 -22.83 16 14 C 0.54 16.41 6.95 87.66 0.61 17.02 16 15 O -0.57 -20.67 13.35 -3.05 -0.04 -20.71 16 16 C -0.17 -3.99 5.74 -11.54 -0.07 -4.06 16 17 H 0.14 2.69 8.14 -2.38 -0.02 2.67 16 18 C -0.15 -3.57 6.64 -10.09 -0.07 -3.63 16 19 H 0.09 2.55 8.14 -2.38 -0.02 2.53 16 20 C -0.10 -1.74 6.63 31.68 0.21 -1.53 16 21 C -0.12 -1.60 6.91 31.89 0.22 -1.38 16 22 C -0.09 -1.34 6.63 31.67 0.21 -1.13 16 23 C -0.12 -2.71 6.39 -10.10 -0.06 -2.78 16 24 H 0.10 2.62 7.79 -2.38 -0.02 2.60 16 25 C -0.17 -4.28 5.36 -10.79 -0.06 -4.34 16 26 C -0.17 -3.97 10.18 30.62 0.31 -3.65 16 27 C -0.18 -4.54 9.74 30.62 0.30 -4.24 16 28 H 0.26 15.68 8.31 -92.70 -0.77 14.91 16 29 H 0.36 16.58 5.20 -92.71 -0.48 16.10 16 30 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.05 1.60 8.14 -2.38 -0.02 1.58 16 32 H 0.41 11.22 8.60 -92.71 -0.80 10.42 16 33 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 34 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 35 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.12 2.77 8.11 -2.39 -0.02 2.75 16 40 H 0.08 2.18 8.05 -2.39 -0.02 2.16 16 41 H 0.11 2.21 8.14 -2.38 -0.02 2.19 16 42 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 43 H 0.09 2.89 5.02 -2.39 -0.01 2.87 16 Total: -1.00 -68.97 345.04 1.60 -67.36 By element: Atomic # 1 Polarization: 40.16 SS G_CDS: -0.33 Total: 39.83 kcal Atomic # 6 Polarization: -16.52 SS G_CDS: 3.56 Total: -12.96 kcal Atomic # 7 Polarization: -117.92 SS G_CDS: -3.49 Total: -121.41 kcal Atomic # 8 Polarization: -20.67 SS G_CDS: -0.04 Total: -20.71 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 1.90 Total: 47.88 kcal Total: -68.97 1.60 -67.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322973708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.679 kcal (2) G-P(sol) polarization free energy of solvation -68.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds