Wall clock time and date at job start Tue Mar 31 2020 00:32:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99637 * 2 1 4 4 H 1.48500 * 109.46986 * 90.00480 * 3 2 1 5 5 H 1.48496 * 109.47029 * 210.00497 * 3 2 1 6 6 H 1.48499 * 109.47352 * 330.00327 * 3 2 1 7 7 C 1.38811 * 120.00134 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99665 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99798 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99567 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46932 * 179.97438 * 10 9 7 12 12 H 1.08992 * 109.47343 * 295.00014 * 11 10 9 13 13 N 1.46498 * 109.46819 * 55.00522 * 11 10 9 14 14 C 1.34784 * 119.99805 * 204.99771 * 13 11 10 15 15 O 1.21276 * 119.99707 * 359.97438 * 14 13 11 16 16 C 1.50701 * 119.99969 * 179.97438 * 14 13 11 17 17 H 1.08998 * 115.52486 * 325.58621 * 16 14 13 18 18 C 1.53001 * 117.45654 * 111.08011 * 16 14 13 19 19 H 1.08992 * 119.30078 * 356.28987 * 18 16 14 20 20 C 1.56213 * 116.99758 * 200.70512 * 18 16 14 21 21 C 1.54890 * 104.23017 * 272.15006 * 20 18 16 22 22 C 1.54887 * 102.74884 * 38.32840 * 21 20 18 23 23 C 1.53001 * 117.46152 * 180.08573 * 16 14 13 24 24 H 1.09006 * 119.29155 * 3.70972 * 23 16 14 25 25 C 1.53005 * 109.46851 * 174.99869 * 11 10 9 26 26 C 1.52998 * 117.49995 * 248.74507 * 25 11 10 27 27 C 1.53001 * 117.49696 * 180.08500 * 25 11 10 28 28 H 0.97005 * 119.99717 * 180.02562 * 1 2 3 29 29 H 0.97000 * 120.00607 * 0.02562 * 9 7 2 30 30 H 1.08998 * 109.47306 * 300.00481 * 10 9 7 31 31 H 1.08997 * 109.46860 * 60.00305 * 10 9 7 32 32 H 0.97003 * 120.00448 * 24.99648 * 13 11 10 33 33 H 1.08992 * 110.14390 * 153.62054 * 20 18 16 34 34 H 1.09005 * 110.91226 * 31.05467 * 20 18 16 35 35 H 1.09008 * 110.75187 * 280.01511 * 21 20 18 36 36 H 1.08995 * 110.91966 * 156.72100 * 21 20 18 37 37 H 1.09004 * 110.48742 * 203.38315 * 22 21 20 38 38 H 1.09000 * 110.60279 * 80.79344 * 22 21 20 39 39 H 1.09001 * 115.54841 * 34.42538 * 25 11 10 40 40 H 1.09000 * 117.49633 * 0.02562 * 26 25 11 41 41 H 1.08999 * 117.49484 * 145.02559 * 26 25 11 42 42 H 1.08990 * 117.50014 * 214.98239 * 27 25 11 43 43 H 1.09003 * 117.49424 * 359.97438 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 1.4001 5 1 3.5476 1.4404 -0.7001 6 1 1.4476 2.6528 -0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0017 11 6 1.0640 -4.8197 -0.0008 12 1 0.4989 -4.8139 0.9312 13 7 0.1433 -4.6758 -1.1312 14 6 -1.0811 -5.2368 -1.0786 15 8 -1.4204 -5.8609 -0.0957 16 6 -2.0285 -5.0883 -2.2412 17 1 -1.9706 -4.1404 -2.7761 18 6 -2.3429 -6.3423 -3.0595 19 1 -1.8344 -7.2763 -2.8210 20 6 -2.8921 -6.1259 -4.5059 21 6 -4.4255 -6.0136 -4.3180 22 6 -4.5504 -5.2092 -3.0003 23 6 -3.4041 -5.7467 -2.1189 24 1 -3.6773 -6.2421 -1.1872 25 6 1.8248 -6.1411 -0.1277 26 6 1.6653 -6.9257 -1.4315 27 6 1.0020 -7.4309 -0.1477 28 1 -0.4850 -0.8401 0.0004 29 1 0.3556 -2.3881 -0.0005 30 1 2.6843 -3.7140 -0.8921 31 1 2.6855 -3.7148 0.8878 32 1 0.4149 -4.1769 -1.9175 33 1 -2.6464 -6.9829 -5.1328 34 1 -2.4930 -5.2094 -4.9406 35 1 -4.8750 -7.0010 -4.2120 36 1 -4.8803 -5.4708 -5.1466 37 1 -5.5148 -5.3975 -2.5284 38 1 -4.4200 -4.1434 -3.1877 39 1 2.7977 -6.1724 0.3628 40 1 1.0186 -6.5003 -2.1989 41 1 2.5332 -7.4735 -1.7985 42 1 1.4338 -8.3107 0.3292 43 1 -0.0813 -7.3379 -0.0700 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322973729.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:32:52 Heat of formation + Delta-G solvation = 21.662708 kcal Electronic energy + Delta-G solvation = -22173.896156 eV Core-core repulsion = 19027.624363 eV Total energy + Delta-G solvation = -3146.271793 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.51142 -38.94715 -36.89477 -35.10689 -33.41282 -31.93853 -31.02301 -28.30444 -28.03808 -24.35318 -23.65440 -22.31098 -21.70850 -21.03962 -20.07944 -19.76015 -19.68384 -17.51252 -17.20977 -16.10494 -15.99588 -15.29199 -15.06907 -14.36490 -14.23921 -13.76207 -13.58026 -13.49680 -13.23557 -12.97971 -12.71111 -12.24348 -11.72871 -11.54075 -11.50560 -11.41311 -11.30455 -11.21966 -11.01424 -10.73738 -10.59373 -10.24672 -10.15349 -10.03521 -9.93892 -9.74129 -9.48585 -9.19612 -8.92815 -8.69794 -7.04726 -6.12760 -3.13445 2.61105 3.29378 3.50366 3.55272 3.68779 3.69261 4.01021 4.41316 4.58469 4.62156 4.62980 4.86822 4.99340 5.08600 5.11406 5.15092 5.16315 5.25669 5.31731 5.45713 5.50532 5.57391 5.58286 5.66520 5.70538 5.80296 5.83323 5.91531 5.92064 5.94972 5.99436 6.12021 6.13064 6.25303 6.27617 6.42195 6.47155 6.62015 6.87489 7.77947 7.80019 8.47744 8.73321 9.19053 10.05820 10.20501 11.35345 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.014709 B = 0.004987 C = 0.003998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1903.189411 B = 5613.465794 C = 7001.390239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.044 4.044 3 Si 1.083 2.917 4 H -0.295 1.295 5 H -0.295 1.295 6 H -0.288 1.288 7 C -0.334 4.334 8 H 0.065 0.935 9 N -0.743 5.743 10 C 0.154 3.846 11 C 0.167 3.833 12 H 0.089 0.911 13 N -0.705 5.705 14 C 0.545 3.455 15 O -0.543 6.543 16 C -0.164 4.164 17 H 0.121 0.879 18 C -0.139 4.139 19 H 0.115 0.885 20 C -0.095 4.095 21 C -0.123 4.123 22 C -0.098 4.098 23 C -0.129 4.129 24 H 0.120 0.880 25 C -0.161 4.161 26 C -0.176 4.176 27 C -0.187 4.187 28 H 0.255 0.745 29 H 0.369 0.631 30 H 0.027 0.973 31 H 0.034 0.966 32 H 0.405 0.595 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.109 0.891 40 H 0.092 0.908 41 H 0.086 0.914 42 H 0.084 0.916 43 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.163 -14.990 -8.768 17.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.241 4.241 3 Si 0.914 3.086 4 H -0.223 1.223 5 H -0.221 1.221 6 H -0.214 1.214 7 C -0.465 4.465 8 H 0.083 0.917 9 N -0.389 5.389 10 C 0.026 3.974 11 C 0.062 3.938 12 H 0.107 0.893 13 N -0.355 5.355 14 C 0.332 3.668 15 O -0.421 6.421 16 C -0.185 4.185 17 H 0.139 0.861 18 C -0.157 4.157 19 H 0.133 0.867 20 C -0.133 4.133 21 C -0.160 4.160 22 C -0.136 4.136 23 C -0.148 4.148 24 H 0.138 0.862 25 C -0.181 4.181 26 C -0.214 4.214 27 C -0.224 4.224 28 H 0.066 0.934 29 H 0.202 0.798 30 H 0.045 0.955 31 H 0.052 0.948 32 H 0.240 0.760 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.127 0.873 40 H 0.111 0.889 41 H 0.105 0.895 42 H 0.103 0.897 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -4.304 -13.756 -8.063 16.516 hybrid contribution 0.314 -1.378 -0.219 1.430 sum -3.989 -15.134 -8.282 17.707 Atomic orbital electron populations 1.70854 1.06051 1.28444 1.53421 1.25786 0.97032 1.00999 1.00313 0.83189 0.73842 0.75269 0.76282 1.22293 1.22143 1.21393 1.20051 0.92053 0.85714 1.48704 0.91677 1.42354 1.05003 1.00714 1.90813 1.20842 0.92931 0.84597 0.99034 1.20769 0.90174 0.92934 0.89912 0.89275 1.45934 1.14323 1.54511 1.20735 1.19532 0.81682 0.78333 0.87246 1.90602 1.76177 1.41834 1.33521 1.22413 0.97721 0.99119 0.99232 0.86092 1.23642 1.02923 0.95990 0.93162 0.86674 1.22331 0.94958 1.02048 0.93947 1.22664 0.95754 1.00346 0.97247 1.22011 0.97196 0.99899 0.94469 1.23181 0.88342 1.02639 1.00613 0.86209 1.22682 1.00768 0.92467 1.02147 1.22893 1.02949 1.03921 0.91607 1.23330 1.01515 0.96727 1.00800 0.93388 0.79759 0.95508 0.94794 0.75977 0.91136 0.90990 0.91288 0.91196 0.90939 0.91003 0.87299 0.88918 0.89507 0.89747 0.86632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.17 13.70 55.49 0.76 -28.41 16 2 C -0.04 -1.26 5.50 -17.43 -0.10 -1.36 16 3 Si 1.08 25.89 29.92 -169.99 -5.09 20.81 16 4 H -0.30 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 7 C -0.33 -9.39 9.99 -15.06 -0.15 -9.54 16 8 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 9 N -0.74 -18.51 5.43 -59.91 -0.33 -18.83 16 10 C 0.15 3.07 5.80 -4.04 -0.02 3.05 16 11 C 0.17 2.87 2.59 -67.93 -0.18 2.69 16 12 H 0.09 1.75 7.58 -51.93 -0.39 1.35 16 13 N -0.71 -11.29 3.05 -53.80 -0.16 -11.46 16 14 C 0.55 8.83 6.45 -10.98 -0.07 8.76 16 15 O -0.54 -10.21 13.35 5.56 0.07 -10.14 16 16 C -0.16 -2.19 5.70 -91.77 -0.52 -2.71 16 17 H 0.12 1.57 8.14 -51.93 -0.42 1.15 16 18 C -0.14 -1.54 6.81 -88.48 -0.60 -2.14 16 19 H 0.12 1.30 8.14 -51.93 -0.42 0.88 16 20 C -0.10 -0.85 6.66 -24.01 -0.16 -1.01 16 21 C -0.12 -1.02 6.91 -24.74 -0.17 -1.19 16 22 C -0.10 -0.98 6.62 -25.07 -0.17 -1.15 16 23 C -0.13 -1.58 6.34 -89.54 -0.57 -2.15 16 24 H 0.12 1.62 7.78 -51.93 -0.40 1.22 16 25 C -0.16 -2.35 5.71 -90.62 -0.52 -2.87 16 26 C -0.18 -2.31 9.74 -26.69 -0.26 -2.57 16 27 C -0.19 -2.64 9.82 -26.69 -0.26 -2.90 16 28 H 0.25 7.84 6.77 -40.82 -0.28 7.56 16 29 H 0.37 9.56 6.17 -40.82 -0.25 9.30 16 30 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.41 6.29 8.60 -40.82 -0.35 5.94 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.54 8.14 -51.92 -0.42 0.11 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.11 1.48 8.11 -51.93 -0.42 1.06 16 40 H 0.09 1.23 6.67 -51.93 -0.35 0.88 16 41 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.12 1.88 5.01 -51.93 -0.26 1.62 16 LS Contribution 343.65 15.07 5.18 5.18 Total: -1.00 -31.84 343.65 -10.29 -42.14 By element: Atomic # 1 Polarization: 22.79 SS G_CDS: -6.98 Total: 15.80 kcal Atomic # 6 Polarization: -11.34 SS G_CDS: -3.75 Total: -15.08 kcal Atomic # 7 Polarization: -58.97 SS G_CDS: 0.27 Total: -58.70 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: 0.07 Total: -10.14 kcal Atomic # 14 Polarization: 25.89 SS G_CDS: -5.09 Total: 20.81 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.84 -10.29 -42.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322973729.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.799 kcal (2) G-P(sol) polarization free energy of solvation -31.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds