Wall clock time and date at job start Tue Mar 31 2020 00:32:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99637 * 2 1 4 4 H 1.48500 * 109.46986 * 90.00480 * 3 2 1 5 5 H 1.48496 * 109.47029 * 210.00497 * 3 2 1 6 6 H 1.48499 * 109.47352 * 330.00327 * 3 2 1 7 7 C 1.38811 * 120.00134 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99665 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99798 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99567 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46932 * 179.97438 * 10 9 7 12 12 H 1.08992 * 109.47343 * 295.00014 * 11 10 9 13 13 N 1.46498 * 109.46819 * 55.00522 * 11 10 9 14 14 C 1.34784 * 119.99805 * 204.99771 * 13 11 10 15 15 O 1.21276 * 119.99707 * 359.97438 * 14 13 11 16 16 C 1.50701 * 119.99969 * 179.97438 * 14 13 11 17 17 H 1.08998 * 115.52486 * 325.58621 * 16 14 13 18 18 C 1.53001 * 117.45654 * 111.08011 * 16 14 13 19 19 H 1.08992 * 119.30078 * 356.28987 * 18 16 14 20 20 C 1.56213 * 116.99758 * 200.70512 * 18 16 14 21 21 C 1.54890 * 104.23017 * 272.15006 * 20 18 16 22 22 C 1.54887 * 102.74884 * 38.32840 * 21 20 18 23 23 C 1.53001 * 117.46152 * 180.08573 * 16 14 13 24 24 H 1.09006 * 119.29155 * 3.70972 * 23 16 14 25 25 C 1.53005 * 109.46851 * 174.99869 * 11 10 9 26 26 C 1.52998 * 117.49995 * 248.74507 * 25 11 10 27 27 C 1.53001 * 117.49696 * 180.08500 * 25 11 10 28 28 H 0.97005 * 119.99717 * 180.02562 * 1 2 3 29 29 H 0.97000 * 120.00607 * 0.02562 * 9 7 2 30 30 H 1.08998 * 109.47306 * 300.00481 * 10 9 7 31 31 H 1.08997 * 109.46860 * 60.00305 * 10 9 7 32 32 H 0.97003 * 120.00448 * 24.99648 * 13 11 10 33 33 H 1.08992 * 110.14390 * 153.62054 * 20 18 16 34 34 H 1.09005 * 110.91226 * 31.05467 * 20 18 16 35 35 H 1.09008 * 110.75187 * 280.01511 * 21 20 18 36 36 H 1.08995 * 110.91966 * 156.72100 * 21 20 18 37 37 H 1.09004 * 110.48742 * 203.38315 * 22 21 20 38 38 H 1.09000 * 110.60279 * 80.79344 * 22 21 20 39 39 H 1.09001 * 115.54841 * 34.42538 * 25 11 10 40 40 H 1.09000 * 117.49633 * 0.02562 * 26 25 11 41 41 H 1.08999 * 117.49484 * 145.02559 * 26 25 11 42 42 H 1.08990 * 117.50014 * 214.98239 * 27 25 11 43 43 H 1.09003 * 117.49424 * 359.97438 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 1.4001 5 1 3.5476 1.4404 -0.7001 6 1 1.4476 2.6528 -0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0017 11 6 1.0640 -4.8197 -0.0008 12 1 0.4989 -4.8139 0.9312 13 7 0.1433 -4.6758 -1.1312 14 6 -1.0811 -5.2368 -1.0786 15 8 -1.4204 -5.8609 -0.0957 16 6 -2.0285 -5.0883 -2.2412 17 1 -1.9706 -4.1404 -2.7761 18 6 -2.3429 -6.3423 -3.0595 19 1 -1.8344 -7.2763 -2.8210 20 6 -2.8921 -6.1259 -4.5059 21 6 -4.4255 -6.0136 -4.3180 22 6 -4.5504 -5.2092 -3.0003 23 6 -3.4041 -5.7467 -2.1189 24 1 -3.6773 -6.2421 -1.1872 25 6 1.8248 -6.1411 -0.1277 26 6 1.6653 -6.9257 -1.4315 27 6 1.0020 -7.4309 -0.1477 28 1 -0.4850 -0.8401 0.0004 29 1 0.3556 -2.3881 -0.0005 30 1 2.6843 -3.7140 -0.8921 31 1 2.6855 -3.7148 0.8878 32 1 0.4149 -4.1769 -1.9175 33 1 -2.6464 -6.9829 -5.1328 34 1 -2.4930 -5.2094 -4.9406 35 1 -4.8750 -7.0010 -4.2120 36 1 -4.8803 -5.4708 -5.1466 37 1 -5.5148 -5.3975 -2.5284 38 1 -4.4200 -4.1434 -3.1877 39 1 2.7977 -6.1724 0.3628 40 1 1.0186 -6.5003 -2.1989 41 1 2.5332 -7.4735 -1.7985 42 1 1.4338 -8.3107 0.3292 43 1 -0.0813 -7.3379 -0.0700 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322973729.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:32:50 Heat of formation + Delta-G solvation = 3.340007 kcal Electronic energy + Delta-G solvation = -22174.690688 eV Core-core repulsion = 19027.624363 eV Total energy + Delta-G solvation = -3147.066325 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.70183 -40.01751 -38.18529 -36.85744 -34.96047 -33.18961 -32.53078 -29.72795 -29.08197 -25.97796 -25.17714 -23.65040 -23.12454 -21.93134 -21.15219 -20.99943 -20.69017 -19.41521 -18.54956 -17.52119 -17.28533 -16.66443 -15.95127 -15.90285 -15.76147 -15.41003 -15.05347 -14.71421 -14.53075 -14.05474 -13.81955 -13.72273 -13.09846 -12.92751 -12.68336 -12.59557 -12.43306 -12.39707 -12.24943 -12.00316 -11.87495 -11.72317 -11.45586 -11.30339 -11.15294 -11.01338 -10.98536 -10.87200 -10.62833 -10.06160 -9.15933 -8.41786 -5.36863 1.38222 1.58680 1.69116 1.83280 2.04911 2.66886 2.69436 2.87015 3.38437 3.41620 3.53003 3.68105 3.72570 3.85121 3.98785 4.02014 4.06100 4.12494 4.22422 4.31558 4.36488 4.44995 4.47325 4.53383 4.65276 4.76251 4.76719 4.78886 4.94030 4.98068 5.02381 5.13369 5.17680 5.17826 5.19211 5.25400 5.31311 5.46185 5.49023 5.57386 6.45681 6.48133 7.04189 7.17390 7.94685 8.06307 9.09223 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.014709 B = 0.004987 C = 0.003998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1903.189411 B = 5613.465794 C = 7001.390239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.974 5.974 2 C -0.102 4.102 3 Si 1.132 2.868 4 H -0.288 1.288 5 H -0.270 1.270 6 H -0.293 1.293 7 C -0.335 4.335 8 H 0.070 0.930 9 N -0.754 5.754 10 C 0.157 3.843 11 C 0.178 3.822 12 H 0.058 0.942 13 N -0.702 5.702 14 C 0.542 3.458 15 O -0.574 6.574 16 C -0.179 4.179 17 H 0.124 0.876 18 C -0.118 4.118 19 H 0.114 0.886 20 C -0.092 4.092 21 C -0.116 4.116 22 C -0.098 4.098 23 C -0.139 4.139 24 H 0.100 0.900 25 C -0.171 4.171 26 C -0.158 4.158 27 C -0.188 4.188 28 H 0.241 0.759 29 H 0.360 0.640 30 H 0.039 0.961 31 H 0.035 0.965 32 H 0.408 0.592 33 H 0.089 0.911 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.079 0.921 38 H 0.066 0.934 39 H 0.124 0.876 40 H 0.089 0.911 41 H 0.111 0.889 42 H 0.103 0.897 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.200 -15.837 -10.532 19.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.293 4.293 3 Si 0.956 3.044 4 H -0.215 1.215 5 H -0.195 1.195 6 H -0.220 1.220 7 C -0.466 4.466 8 H 0.088 0.912 9 N -0.399 5.399 10 C 0.030 3.970 11 C 0.073 3.927 12 H 0.076 0.924 13 N -0.351 5.351 14 C 0.331 3.669 15 O -0.455 6.455 16 C -0.200 4.200 17 H 0.141 0.859 18 C -0.137 4.137 19 H 0.132 0.868 20 C -0.129 4.129 21 C -0.153 4.153 22 C -0.135 4.135 23 C -0.157 4.157 24 H 0.118 0.882 25 C -0.190 4.190 26 C -0.195 4.195 27 C -0.225 4.225 28 H 0.052 0.948 29 H 0.192 0.808 30 H 0.057 0.943 31 H 0.053 0.947 32 H 0.244 0.756 33 H 0.107 0.893 34 H 0.093 0.907 35 H 0.096 0.904 36 H 0.105 0.895 37 H 0.098 0.902 38 H 0.085 0.915 39 H 0.142 0.858 40 H 0.107 0.893 41 H 0.130 0.870 42 H 0.122 0.878 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -3.308 -14.647 -9.839 17.952 hybrid contribution 0.025 -1.187 0.385 1.248 sum -3.283 -15.834 -9.454 18.732 Atomic orbital electron populations 1.70980 1.07272 1.27703 1.56204 1.27233 0.97027 1.04717 1.00349 0.82573 0.73638 0.71408 0.76745 1.21453 1.19479 1.21963 1.20422 0.92495 0.86865 1.46844 0.91181 1.42533 1.04800 1.01779 1.90809 1.20947 0.93275 0.83512 0.99248 1.20482 0.89577 0.93537 0.89131 0.92413 1.45888 1.14380 1.54502 1.20367 1.20017 0.81763 0.77525 0.87635 1.90586 1.76706 1.43262 1.34911 1.22379 0.98028 1.00489 0.99125 0.85857 1.23764 1.01136 0.94388 0.94394 0.86826 1.22394 0.95201 1.03025 0.92301 1.22662 0.95392 1.00714 0.96544 1.22054 0.96505 0.99839 0.95098 1.23255 0.88952 1.02798 1.00742 0.88164 1.22609 1.01091 0.91089 1.04225 1.22967 1.03261 1.02581 0.90697 1.23267 1.00201 0.96958 1.02034 0.94844 0.80769 0.94302 0.94736 0.75627 0.89256 0.90736 0.90368 0.89529 0.90196 0.91486 0.85848 0.89256 0.87037 0.87846 0.89021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.37 13.70 21.65 0.30 -61.08 16 2 C -0.10 -5.92 5.50 84.86 0.47 -5.45 16 3 Si 1.13 51.76 29.92 68.60 2.05 53.81 16 4 H -0.29 -12.70 7.11 99.48 0.71 -11.99 16 5 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 6 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 7 C -0.34 -18.78 9.99 84.03 0.84 -17.94 16 8 H 0.07 3.80 7.83 -2.91 -0.02 3.77 16 9 N -0.75 -38.10 5.43 -343.44 -1.87 -39.97 16 10 C 0.16 6.24 5.80 86.38 0.50 6.74 16 11 C 0.18 6.21 2.59 44.99 0.12 6.33 16 12 H 0.06 2.38 7.58 -2.39 -0.02 2.36 16 13 N -0.70 -22.96 3.05 -442.53 -1.35 -24.31 16 14 C 0.54 18.17 6.45 87.66 0.57 18.74 16 15 O -0.57 -22.65 13.35 -3.02 -0.04 -22.69 16 16 C -0.18 -4.86 5.70 -11.54 -0.07 -4.92 16 17 H 0.12 3.25 8.14 -2.39 -0.02 3.23 16 18 C -0.12 -2.51 6.81 -9.40 -0.06 -2.58 16 19 H 0.11 2.46 8.14 -2.39 -0.02 2.44 16 20 C -0.09 -1.42 6.66 32.36 0.22 -1.20 16 21 C -0.12 -1.64 6.91 31.88 0.22 -1.42 16 22 C -0.10 -1.85 6.62 31.67 0.21 -1.64 16 23 C -0.14 -3.42 6.34 -10.09 -0.06 -3.48 16 24 H 0.10 2.86 7.78 -2.38 -0.02 2.84 16 25 C -0.17 -4.80 5.71 -10.79 -0.06 -4.86 16 26 C -0.16 -3.80 9.74 30.62 0.30 -3.51 16 27 C -0.19 -5.11 9.82 30.62 0.30 -4.81 16 28 H 0.24 15.34 6.77 -92.70 -0.63 14.72 16 29 H 0.36 19.30 6.17 -92.71 -0.57 18.73 16 30 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.41 12.82 8.60 -92.71 -0.80 12.02 16 33 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 35 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 36 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.12 3.12 8.11 -2.39 -0.02 3.10 16 40 H 0.09 2.23 6.67 -2.39 -0.02 2.21 16 41 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 42 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 43 H 0.09 3.02 5.01 -2.39 -0.01 3.01 16 Total: -1.00 -69.25 343.65 2.35 -66.90 By element: Atomic # 1 Polarization: 47.59 SS G_CDS: -0.22 Total: 47.37 kcal Atomic # 6 Polarization: -23.50 SS G_CDS: 3.48 Total: -20.02 kcal Atomic # 7 Polarization: -122.44 SS G_CDS: -2.92 Total: -125.36 kcal Atomic # 8 Polarization: -22.65 SS G_CDS: -0.04 Total: -22.69 kcal Atomic # 14 Polarization: 51.76 SS G_CDS: 2.05 Total: 53.81 kcal Total: -69.25 2.35 -66.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322973729.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.239 kcal (2) G-P(sol) polarization free energy of solvation -69.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds