Wall clock time and date at job start Tue Mar 31 2020 00:01:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86802 * 120.00057 * 2 1 4 4 H 1.48502 * 109.47222 * 270.00277 * 3 2 1 5 5 H 1.48506 * 109.46857 * 29.99812 * 3 2 1 6 6 H 1.48494 * 109.47345 * 149.99654 * 3 2 1 7 7 C 1.38808 * 120.00363 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99984 * 0.02562 * 7 2 1 9 9 N 1.36935 * 120.00493 * 179.97438 * 7 2 1 10 10 C 1.46500 * 120.00324 * 184.48491 * 9 7 2 11 11 C 1.52999 * 115.55014 * 294.74143 * 10 9 7 12 12 N 1.46505 * 109.47093 * 276.06500 * 11 10 9 13 13 C 1.34773 * 119.99816 * 184.98806 * 12 11 10 14 14 O 1.21609 * 120.00134 * 5.04109 * 13 12 11 15 15 C 1.47098 * 119.99757 * 185.04795 * 13 12 11 16 16 C 1.31859 * 119.78273 * 174.69931 * 15 13 12 17 17 C 1.51406 * 120.09041 * 180.15336 * 16 15 13 18 18 C 1.53041 * 108.72373 * 71.40110 * 17 16 15 19 19 C 1.51781 * 110.80418 * 274.19449 * 18 17 16 20 20 C 1.51782 * 113.84399 * 66.93983 * 19 18 17 21 21 C 1.51415 * 119.85479 * 354.56464 * 15 13 12 22 22 C 1.53003 * 117.49675 * 80.41007 * 10 9 7 23 23 C 1.52997 * 117.49740 * 149.06832 * 10 9 7 24 24 H 0.97000 * 120.00359 * 0.02562 * 1 2 3 25 25 H 0.96998 * 119.99877 * 4.48899 * 9 7 2 26 26 H 1.08999 * 109.47135 * 156.06832 * 11 10 9 27 27 H 1.08997 * 109.47083 * 36.06259 * 11 10 9 28 28 H 0.96995 * 119.99873 * 4.98864 * 12 11 10 29 29 H 1.07997 * 120.05608 * 359.89133 * 16 15 13 30 30 H 1.08998 * 109.62131 * 311.57841 * 17 16 15 31 31 H 1.09001 * 109.61890 * 191.21188 * 17 16 15 32 32 H 1.08998 * 109.21276 * 34.53506 * 18 17 16 33 33 H 1.08999 * 109.20809 * 153.90222 * 18 17 16 34 34 H 1.09001 * 108.61045 * 188.07279 * 19 18 17 35 35 H 1.09008 * 108.61030 * 305.95329 * 19 18 17 36 36 H 1.09003 * 109.20838 * 53.40309 * 20 19 18 37 37 H 1.09000 * 109.20909 * 172.76240 * 20 19 18 38 38 H 1.09000 * 109.61810 * 348.66617 * 21 15 13 39 39 H 1.08994 * 109.62266 * 228.11778 * 21 15 13 40 40 H 1.08997 * 117.49595 * 215.00695 * 22 10 9 41 41 H 1.09001 * 117.50075 * 0.02564 * 22 10 9 42 42 H 1.08997 * 117.50246 * 359.97438 * 23 10 9 43 43 H 1.09007 * 117.49823 * 144.98002 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5476 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3796 -1.2021 0.0000 10 6 4.1121 -2.4670 -0.0986 11 6 3.9422 -3.4219 1.0846 12 7 4.8799 -3.0533 2.1482 13 6 4.9809 -3.8189 3.2528 14 8 4.3625 -4.8634 3.3272 15 6 5.8388 -3.3910 4.3683 16 6 5.8540 -4.0879 5.4876 17 6 6.7319 -3.6517 6.6415 18 6 6.1382 -2.3832 7.2584 19 6 6.6223 -1.1478 6.5213 20 6 6.1113 -1.0442 5.0958 21 6 6.7017 -2.1551 4.2245 22 6 4.2690 -3.0859 -1.4891 23 6 5.4732 -2.4425 -0.7969 24 1 -0.4851 0.8400 -0.0004 25 1 3.8646 -0.3646 0.0650 26 1 4.1444 -4.4426 0.7597 27 1 2.9215 -3.3558 1.4612 28 1 5.4281 -2.2582 2.0574 29 1 5.2369 -4.9688 5.5847 30 1 7.7385 -3.4455 6.2780 31 1 6.7684 -4.4411 7.3923 32 1 5.0508 -2.4317 7.2014 33 1 6.4400 -2.3176 8.3037 34 1 6.2982 -0.2648 7.0720 35 1 7.7120 -1.1614 6.4979 36 1 5.0245 -1.1290 5.0974 37 1 6.3949 -0.0763 4.6826 38 1 6.7130 -1.8359 3.1823 39 1 7.7170 -2.3773 4.5530 40 1 4.2511 -4.1733 -1.5608 41 1 3.8276 -2.5517 -2.3305 42 1 5.8235 -1.4854 -1.1834 43 1 6.2478 -3.1065 -0.4132 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323424069.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:01:55 Heat of formation + Delta-G solvation = 2.366277 kcal Electronic energy + Delta-G solvation = -22048.256498 eV Core-core repulsion = 18901.147949 eV Total energy + Delta-G solvation = -3147.108549 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.95023 -38.21458 -37.40182 -33.93101 -33.04223 -32.59708 -31.97092 -30.37081 -27.04734 -25.62988 -24.13471 -23.57487 -22.08312 -21.04221 -20.44519 -19.37926 -18.01006 -17.66992 -17.20975 -15.97718 -15.57936 -14.98547 -14.85148 -14.45086 -14.25461 -14.09097 -13.76975 -13.61006 -13.31857 -12.94124 -12.76219 -12.42335 -12.16350 -12.09849 -11.75830 -11.26302 -11.24070 -11.07153 -10.99327 -10.88563 -10.82606 -10.61170 -10.47430 -10.20399 -9.70173 -9.64684 -9.41152 -9.09280 -8.89728 -8.58983 -7.38231 -5.82697 -3.20953 1.50038 3.29975 3.33427 3.39721 3.40434 3.57510 4.35102 4.50621 4.51903 4.67148 4.67745 4.86248 4.88885 4.97378 5.06646 5.15690 5.21205 5.34183 5.38002 5.45952 5.52069 5.56137 5.58948 5.69162 5.72966 5.88252 5.95505 5.97191 5.97902 6.03015 6.17418 6.24385 6.31766 6.38062 6.43484 6.57354 6.61960 6.68177 6.83440 7.87055 7.93736 8.35788 8.53328 9.12553 9.84018 10.02108 11.35085 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.016371 B = 0.004999 C = 0.004367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.911353 B = 5599.289929 C = 6410.262555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.009 3.991 3 Si 0.884 3.116 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.244 4.244 8 H 0.093 0.907 9 N -0.714 5.714 10 C 0.132 3.868 11 C 0.146 3.854 12 N -0.710 5.710 13 C 0.548 3.452 14 O -0.553 6.553 15 C -0.173 4.173 16 C -0.079 4.079 17 C -0.094 4.094 18 C -0.115 4.115 19 C -0.117 4.117 20 C -0.119 4.119 21 C -0.080 4.080 22 C -0.180 4.180 23 C -0.189 4.189 24 H 0.260 0.740 25 H 0.365 0.635 26 H 0.064 0.936 27 H 0.081 0.919 28 H 0.399 0.601 29 H 0.125 0.875 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.058 0.942 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.077 0.923 40 H 0.086 0.914 41 H 0.098 0.902 42 H 0.090 0.910 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.723 -3.848 10.628 21.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.187 4.187 3 Si 0.714 3.286 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.373 4.373 8 H 0.111 0.889 9 N -0.356 5.356 10 C 0.039 3.961 11 C 0.021 3.979 12 N -0.360 5.360 13 C 0.335 3.665 14 O -0.433 6.433 15 C -0.176 4.176 16 C -0.098 4.098 17 C -0.132 4.132 18 C -0.153 4.153 19 C -0.155 4.155 20 C -0.156 4.156 21 C -0.117 4.117 22 C -0.220 4.220 23 C -0.227 4.227 24 H 0.071 0.929 25 H 0.199 0.801 26 H 0.082 0.918 27 H 0.099 0.901 28 H 0.234 0.766 29 H 0.143 0.857 30 H 0.095 0.905 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.096 0.904 40 H 0.105 0.895 41 H 0.116 0.884 42 H 0.109 0.891 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 16.965 -4.577 10.651 20.548 hybrid contribution 0.654 1.684 -0.165 1.814 sum 17.619 -2.893 10.486 20.706 Atomic orbital electron populations 1.69692 1.05081 1.25894 1.56937 1.24657 0.95188 0.97090 1.01756 0.86575 0.79099 0.85159 0.77761 1.21062 1.21677 1.20459 1.18994 0.80043 0.94856 1.43416 0.88931 1.42142 1.03823 1.00849 1.88771 1.20070 0.94595 0.90200 0.91248 1.21270 0.93823 0.96485 0.86361 1.45923 1.42470 1.28629 1.18972 1.18382 0.81710 0.83768 0.82595 1.90760 1.47440 1.23889 1.81191 1.21351 1.01481 0.99311 0.95480 1.23354 0.95972 0.97478 0.93030 1.20933 0.98456 0.97832 0.95935 1.21270 1.01415 0.93672 0.98902 1.21132 1.00651 0.97889 0.95827 1.21319 1.01592 0.98045 0.94673 1.20761 0.98111 0.92459 1.00402 1.23360 1.01096 0.99353 0.98191 1.23132 0.91412 1.02587 1.05595 0.92938 0.80104 0.91753 0.90107 0.76590 0.85710 0.90506 0.90935 0.91522 0.91601 0.92162 0.92296 0.91329 0.91366 0.91289 0.90440 0.89523 0.88375 0.89132 0.89173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.79 13.97 55.49 0.78 -28.02 16 2 C 0.01 0.27 5.50 -17.43 -0.10 0.17 16 3 Si 0.88 21.49 27.78 -169.99 -4.72 16.77 16 4 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 6 H -0.28 -6.27 6.46 56.52 0.37 -5.90 16 7 C -0.24 -6.67 10.01 -15.06 -0.15 -6.82 16 8 H 0.09 2.76 8.04 -52.48 -0.42 2.34 16 9 N -0.71 -16.12 5.29 -47.23 -0.25 -16.37 16 10 C 0.13 2.45 2.18 -131.82 -0.29 2.16 16 11 C 0.15 2.69 5.79 -4.04 -0.02 2.67 16 12 N -0.71 -11.46 5.42 -61.49 -0.33 -11.79 16 13 C 0.55 9.16 7.73 -12.67 -0.10 9.06 16 14 O -0.55 -11.20 16.18 5.27 0.09 -11.11 16 15 C -0.17 -2.23 5.11 -102.58 -0.52 -2.76 16 16 C -0.08 -0.92 8.95 -35.86 -0.32 -1.24 16 17 C -0.09 -0.80 5.61 -27.52 -0.15 -0.95 16 18 C -0.12 -0.96 5.66 -27.33 -0.15 -1.11 16 19 C -0.12 -0.98 5.27 -27.97 -0.15 -1.13 16 20 C -0.12 -1.20 5.66 -27.33 -0.15 -1.35 16 21 C -0.08 -0.82 5.33 -27.51 -0.15 -0.96 16 22 C -0.18 -3.01 10.11 -26.69 -0.27 -3.28 16 23 C -0.19 -2.82 10.03 -26.70 -0.27 -3.09 16 24 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 25 H 0.36 8.05 5.87 -40.82 -0.24 7.81 16 26 H 0.06 1.14 7.87 -51.93 -0.41 0.73 16 27 H 0.08 1.77 7.73 -51.93 -0.40 1.37 16 28 H 0.40 5.69 6.25 -40.82 -0.26 5.43 16 29 H 0.13 1.60 7.47 -52.49 -0.39 1.21 16 30 H 0.08 0.58 6.74 -51.93 -0.35 0.23 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.65 7.86 -51.93 -0.41 0.24 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.43 7.87 -51.92 -0.41 0.02 16 36 H 0.07 0.84 7.85 -51.93 -0.41 0.43 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.07 0.69 6.08 -51.93 -0.32 0.38 16 39 H 0.08 0.66 6.74 -51.93 -0.35 0.32 16 40 H 0.09 1.31 8.06 -51.93 -0.42 0.89 16 41 H 0.10 1.77 8.14 -51.93 -0.42 1.34 16 42 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 43 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 341.97 15.07 5.15 5.15 Total: -1.00 -32.10 341.97 -8.99 -41.09 By element: Atomic # 1 Polarization: 19.82 SS G_CDS: -6.91 Total: 12.91 kcal Atomic # 6 Polarization: -5.84 SS G_CDS: -2.80 Total: -8.64 kcal Atomic # 7 Polarization: -56.37 SS G_CDS: 0.19 Total: -56.18 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: 0.09 Total: -11.11 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.72 Total: 16.77 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.10 -8.99 -41.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323424069.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.459 kcal (2) G-P(sol) polarization free energy of solvation -32.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.093 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds