Wall clock time and date at job start Tue Mar 31 2020 00:01:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86802 * 120.00057 * 2 1 4 4 H 1.48502 * 109.47222 * 270.00277 * 3 2 1 5 5 H 1.48506 * 109.46857 * 29.99812 * 3 2 1 6 6 H 1.48494 * 109.47345 * 149.99654 * 3 2 1 7 7 C 1.38808 * 120.00363 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99984 * 0.02562 * 7 2 1 9 9 N 1.36935 * 120.00493 * 179.97438 * 7 2 1 10 10 C 1.46500 * 120.00324 * 184.48491 * 9 7 2 11 11 C 1.52999 * 115.55014 * 294.74143 * 10 9 7 12 12 N 1.46505 * 109.47093 * 276.06500 * 11 10 9 13 13 C 1.34773 * 119.99816 * 184.98806 * 12 11 10 14 14 O 1.21609 * 120.00134 * 5.04109 * 13 12 11 15 15 C 1.47098 * 119.99757 * 185.04795 * 13 12 11 16 16 C 1.31859 * 119.78273 * 174.69931 * 15 13 12 17 17 C 1.51406 * 120.09041 * 180.15336 * 16 15 13 18 18 C 1.53041 * 108.72373 * 71.40110 * 17 16 15 19 19 C 1.51781 * 110.80418 * 274.19449 * 18 17 16 20 20 C 1.51782 * 113.84399 * 66.93983 * 19 18 17 21 21 C 1.51415 * 119.85479 * 354.56464 * 15 13 12 22 22 C 1.53003 * 117.49675 * 80.41007 * 10 9 7 23 23 C 1.52997 * 117.49740 * 149.06832 * 10 9 7 24 24 H 0.97000 * 120.00359 * 0.02562 * 1 2 3 25 25 H 0.96998 * 119.99877 * 4.48899 * 9 7 2 26 26 H 1.08999 * 109.47135 * 156.06832 * 11 10 9 27 27 H 1.08997 * 109.47083 * 36.06259 * 11 10 9 28 28 H 0.96995 * 119.99873 * 4.98864 * 12 11 10 29 29 H 1.07997 * 120.05608 * 359.89133 * 16 15 13 30 30 H 1.08998 * 109.62131 * 311.57841 * 17 16 15 31 31 H 1.09001 * 109.61890 * 191.21188 * 17 16 15 32 32 H 1.08998 * 109.21276 * 34.53506 * 18 17 16 33 33 H 1.08999 * 109.20809 * 153.90222 * 18 17 16 34 34 H 1.09001 * 108.61045 * 188.07279 * 19 18 17 35 35 H 1.09008 * 108.61030 * 305.95329 * 19 18 17 36 36 H 1.09003 * 109.20838 * 53.40309 * 20 19 18 37 37 H 1.09000 * 109.20909 * 172.76240 * 20 19 18 38 38 H 1.09000 * 109.61810 * 348.66617 * 21 15 13 39 39 H 1.08994 * 109.62266 * 228.11778 * 21 15 13 40 40 H 1.08997 * 117.49595 * 215.00695 * 22 10 9 41 41 H 1.09001 * 117.50075 * 0.02564 * 22 10 9 42 42 H 1.08997 * 117.50246 * 359.97438 * 23 10 9 43 43 H 1.09007 * 117.49823 * 144.98002 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5476 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3796 -1.2021 0.0000 10 6 4.1121 -2.4670 -0.0986 11 6 3.9422 -3.4219 1.0846 12 7 4.8799 -3.0533 2.1482 13 6 4.9809 -3.8189 3.2528 14 8 4.3625 -4.8634 3.3272 15 6 5.8388 -3.3910 4.3683 16 6 5.8540 -4.0879 5.4876 17 6 6.7319 -3.6517 6.6415 18 6 6.1382 -2.3832 7.2584 19 6 6.6223 -1.1478 6.5213 20 6 6.1113 -1.0442 5.0958 21 6 6.7017 -2.1551 4.2245 22 6 4.2690 -3.0859 -1.4891 23 6 5.4732 -2.4425 -0.7969 24 1 -0.4851 0.8400 -0.0004 25 1 3.8646 -0.3646 0.0650 26 1 4.1444 -4.4426 0.7597 27 1 2.9215 -3.3558 1.4612 28 1 5.4281 -2.2582 2.0574 29 1 5.2369 -4.9688 5.5847 30 1 7.7385 -3.4455 6.2780 31 1 6.7684 -4.4411 7.3923 32 1 5.0508 -2.4317 7.2014 33 1 6.4400 -2.3176 8.3037 34 1 6.2982 -0.2648 7.0720 35 1 7.7120 -1.1614 6.4979 36 1 5.0245 -1.1290 5.0974 37 1 6.3949 -0.0763 4.6826 38 1 6.7130 -1.8359 3.1823 39 1 7.7170 -2.3773 4.5530 40 1 4.2511 -4.1733 -1.5608 41 1 3.8276 -2.5517 -2.3305 42 1 5.8235 -1.4854 -1.1834 43 1 6.2478 -3.1065 -0.4132 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323424069.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:01:55 Heat of formation + Delta-G solvation = -18.872410 kcal Electronic energy + Delta-G solvation = -22049.177476 eV Core-core repulsion = 18901.147949 eV Total energy + Delta-G solvation = -3148.029527 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.17538 -39.40499 -38.64176 -35.45612 -34.88632 -33.47567 -32.76864 -32.38125 -28.39898 -26.48401 -25.69190 -24.94510 -23.37605 -22.19839 -21.20300 -20.88819 -19.76480 -19.22608 -18.20779 -17.31546 -16.99245 -16.31103 -15.98767 -15.85364 -15.69491 -15.27158 -14.83326 -14.75896 -14.52386 -14.19082 -14.11228 -13.80471 -13.65012 -13.10624 -12.96322 -12.88264 -12.56971 -12.31160 -12.21853 -12.08715 -11.87750 -11.75397 -11.58974 -11.53020 -11.32725 -11.05993 -11.03599 -10.61824 -10.20074 -9.85738 -9.35499 -8.03250 -5.39439 0.44160 1.35311 1.40988 1.47586 2.11841 2.33236 2.46918 2.98477 3.27602 3.37772 3.67872 3.75376 3.76419 3.99168 4.10043 4.11802 4.15318 4.22470 4.24622 4.47247 4.58083 4.67915 4.75568 4.78525 4.80874 4.85838 4.88324 4.95789 4.99726 5.13089 5.23292 5.26065 5.29515 5.33689 5.34557 5.42634 5.51569 5.56383 5.67870 5.77675 6.19758 6.59274 7.05482 7.22696 7.78890 7.99256 9.18329 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.016371 B = 0.004999 C = 0.004367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.911353 B = 5599.289929 C = 6410.262555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.985 5.985 2 C -0.063 4.063 3 Si 0.958 3.042 4 H -0.278 1.278 5 H -0.300 1.300 6 H -0.245 1.245 7 C -0.225 4.225 8 H 0.050 0.950 9 N -0.714 5.714 10 C 0.098 3.902 11 C 0.158 3.842 12 N -0.701 5.701 13 C 0.539 3.461 14 O -0.599 6.599 15 C -0.189 4.189 16 C -0.068 4.068 17 C -0.088 4.088 18 C -0.115 4.115 19 C -0.117 4.117 20 C -0.120 4.120 21 C -0.073 4.073 22 C -0.184 4.184 23 C -0.144 4.144 24 H 0.257 0.743 25 H 0.371 0.629 26 H 0.070 0.930 27 H 0.032 0.968 28 H 0.410 0.590 29 H 0.104 0.896 30 H 0.097 0.903 31 H 0.088 0.912 32 H 0.044 0.956 33 H 0.087 0.913 34 H 0.063 0.937 35 H 0.080 0.920 36 H 0.037 0.963 37 H 0.077 0.923 38 H 0.071 0.929 39 H 0.104 0.896 40 H 0.103 0.897 41 H 0.084 0.916 42 H 0.106 0.894 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.164 -2.712 11.420 25.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.254 4.254 3 Si 0.785 3.215 4 H -0.204 1.204 5 H -0.227 1.227 6 H -0.169 1.169 7 C -0.356 4.356 8 H 0.068 0.932 9 N -0.356 5.356 10 C 0.006 3.994 11 C 0.032 3.968 12 N -0.351 5.351 13 C 0.330 3.670 14 O -0.482 6.482 15 C -0.192 4.192 16 C -0.088 4.088 17 C -0.125 4.125 18 C -0.152 4.152 19 C -0.154 4.154 20 C -0.157 4.157 21 C -0.110 4.110 22 C -0.224 4.224 23 C -0.182 4.182 24 H 0.066 0.934 25 H 0.206 0.794 26 H 0.088 0.912 27 H 0.050 0.950 28 H 0.248 0.752 29 H 0.122 0.878 30 H 0.115 0.885 31 H 0.107 0.893 32 H 0.063 0.937 33 H 0.105 0.895 34 H 0.082 0.918 35 H 0.099 0.901 36 H 0.056 0.944 37 H 0.096 0.904 38 H 0.089 0.911 39 H 0.122 0.878 40 H 0.121 0.879 41 H 0.102 0.898 42 H 0.124 0.876 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 21.488 -3.452 11.438 24.586 hybrid contribution -0.781 1.151 -0.381 1.442 sum 20.706 -2.301 11.057 23.586 Atomic orbital electron populations 1.69899 1.07370 1.26699 1.59558 1.25523 0.96061 1.01372 1.02479 0.85367 0.78741 0.79264 0.78096 1.20412 1.22665 1.16945 1.18856 0.82343 0.93160 1.41227 0.93220 1.41972 1.02025 1.02746 1.88889 1.20241 0.98028 0.89170 0.91974 1.20934 0.91891 0.97059 0.86926 1.45825 1.41905 1.28960 1.18456 1.19127 0.81514 0.83054 0.83333 1.90729 1.49518 1.25954 1.82037 1.21341 1.02272 1.01225 0.94373 1.23611 0.95236 0.96110 0.93798 1.21010 0.98391 0.98333 0.94770 1.21282 1.00070 0.93641 1.00217 1.21137 1.01862 0.97920 0.94488 1.21335 0.99697 0.98501 0.96192 1.20795 0.98652 0.90801 1.00739 1.23388 1.02465 1.00385 0.96145 1.23250 0.89926 1.03340 1.01682 0.93375 0.79420 0.91160 0.94979 0.75197 0.87752 0.88458 0.89347 0.93736 0.89462 0.91846 0.90131 0.94416 0.90431 0.91060 0.87806 0.87907 0.89769 0.87604 0.86242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -63.67 13.97 21.65 0.30 -63.37 16 2 C -0.06 -3.70 5.50 84.86 0.47 -3.23 16 3 Si 0.96 44.48 27.78 68.60 1.91 46.38 16 4 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 5 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 6 H -0.25 -9.90 6.46 99.48 0.64 -9.26 16 7 C -0.23 -12.74 10.01 84.03 0.84 -11.90 16 8 H 0.05 3.18 8.04 -2.91 -0.02 3.16 16 9 N -0.71 -31.91 5.29 -303.35 -1.61 -33.52 16 10 C 0.10 3.54 2.18 3.60 0.01 3.55 16 11 C 0.16 5.96 5.79 86.38 0.50 6.46 16 12 N -0.70 -22.41 5.42 -466.72 -2.53 -24.94 16 13 C 0.54 18.26 7.73 86.57 0.67 18.93 16 14 O -0.60 -25.31 16.18 -4.06 -0.07 -25.38 16 15 C -0.19 -4.69 5.11 -18.12 -0.09 -4.78 16 16 C -0.07 -1.51 8.95 25.10 0.22 -1.28 16 17 C -0.09 -1.21 5.61 30.09 0.17 -1.05 16 18 C -0.11 -1.60 5.66 30.21 0.17 -1.43 16 19 C -0.12 -1.57 5.27 29.79 0.16 -1.42 16 20 C -0.12 -2.15 5.66 30.21 0.17 -1.98 16 21 C -0.07 -1.28 5.33 30.09 0.16 -1.12 16 22 C -0.18 -5.88 10.11 30.62 0.31 -5.57 16 23 C -0.14 -3.77 10.03 30.62 0.31 -3.47 16 24 H 0.26 15.85 8.31 -92.71 -0.77 15.08 16 25 H 0.37 15.52 5.87 -92.71 -0.54 14.98 16 26 H 0.07 2.54 7.87 -2.39 -0.02 2.52 16 27 H 0.03 1.51 7.73 -2.39 -0.02 1.49 16 28 H 0.41 11.00 6.25 -92.71 -0.58 10.42 16 29 H 0.10 2.74 7.47 -2.91 -0.02 2.72 16 30 H 0.10 1.02 6.74 -2.39 -0.02 1.01 16 31 H 0.09 0.97 8.14 -2.39 -0.02 0.96 16 32 H 0.04 0.82 7.86 -2.39 -0.02 0.80 16 33 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.08 0.78 7.87 -2.38 -0.02 0.76 16 36 H 0.04 0.90 7.85 -2.39 -0.02 0.88 16 37 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.07 1.21 6.08 -2.39 -0.01 1.19 16 39 H 0.10 1.30 6.74 -2.39 -0.02 1.29 16 40 H 0.10 2.93 8.06 -2.39 -0.02 2.91 16 41 H 0.08 2.95 8.14 -2.39 -0.02 2.93 16 42 H 0.11 2.54 8.14 -2.39 -0.02 2.52 16 43 H 0.12 2.50 8.14 -2.38 -0.02 2.48 16 Total: -1.00 -74.72 341.97 1.89 -72.83 By element: Atomic # 1 Polarization: 36.46 SS G_CDS: -0.18 Total: 36.28 kcal Atomic # 6 Polarization: -12.35 SS G_CDS: 4.06 Total: -8.29 kcal Atomic # 7 Polarization: -118.00 SS G_CDS: -3.83 Total: -121.83 kcal Atomic # 8 Polarization: -25.31 SS G_CDS: -0.07 Total: -25.38 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 1.91 Total: 46.38 kcal Total: -74.72 1.89 -72.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323424069.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.961 kcal (2) G-P(sol) polarization free energy of solvation -74.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds