Wall clock time and date at job start Tue Mar 31 2020 00:09:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86804 * 119.99861 * 2 1 4 4 H 1.48492 * 109.47038 * 270.00087 * 3 2 1 5 5 H 1.48503 * 109.47124 * 30.00218 * 3 2 1 6 6 H 1.48498 * 109.46728 * 149.99832 * 3 2 1 7 7 C 1.38814 * 120.00011 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99954 * 0.02562 * 7 2 1 9 9 N 1.36936 * 120.00008 * 179.97438 * 7 2 1 10 10 C 1.46497 * 119.99871 * 173.75248 * 9 7 2 11 11 C 1.53004 * 115.54959 * 295.37311 * 10 9 7 12 12 N 1.46496 * 109.47161 * 279.55926 * 11 10 9 13 13 C 1.34776 * 120.00212 * 178.34087 * 12 11 10 14 14 O 1.21282 * 119.99966 * 0.02562 * 13 12 11 15 15 C 1.50704 * 120.00342 * 179.97438 * 13 12 11 16 16 C 1.52998 * 109.47079 * 179.97438 * 15 13 12 17 17 H 1.09006 * 109.35782 * 54.72593 * 16 15 13 18 18 C 1.50058 * 109.36069 * 294.99930 * 16 15 13 19 19 C 1.29442 * 124.07995 * 222.68382 * 18 16 15 20 20 C 1.50072 * 124.07031 * 0.44959 * 19 18 16 21 21 C 1.53013 * 110.14695 * 342.86589 * 20 19 18 22 22 C 1.52950 * 109.40872 * 174.08740 * 16 15 13 23 23 C 1.53001 * 117.51883 * 81.07719 * 10 9 7 24 24 C 1.53001 * 117.49806 * 149.70756 * 10 9 7 25 25 H 0.97000 * 119.99758 * 359.97438 * 1 2 3 26 26 H 0.97007 * 119.99662 * 353.75438 * 9 7 2 27 27 H 1.08994 * 109.47205 * 159.55508 * 11 10 9 28 28 H 1.09007 * 109.46870 * 39.55281 * 11 10 9 29 29 H 0.97000 * 120.00546 * 358.33885 * 12 11 10 30 30 H 1.08995 * 109.47028 * 60.00148 * 15 13 12 31 31 H 1.08998 * 109.46641 * 299.99992 * 15 13 12 32 32 H 1.08000 * 117.96347 * 42.65952 * 18 16 15 33 33 H 1.07995 * 117.96640 * 180.46818 * 19 18 16 34 34 H 1.09002 * 109.35193 * 222.65662 * 20 19 18 35 35 H 1.09005 * 109.24764 * 103.00466 * 20 19 18 36 36 H 1.09007 * 109.64320 * 169.12385 * 21 20 19 37 37 H 1.08999 * 109.64459 * 289.53859 * 21 20 19 38 38 H 1.08998 * 109.43910 * 49.82273 * 22 16 15 39 39 H 1.09001 * 109.79884 * 289.21926 * 22 16 15 40 40 H 1.08998 * 117.49676 * 214.96799 * 23 10 9 41 41 H 1.08997 * 117.49719 * 359.97438 * 23 10 9 42 42 H 1.08998 * 117.49612 * 359.97438 * 24 10 9 43 43 H 1.08992 * 117.49758 * 144.99569 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4402 0.7001 7 6 2.0104 -1.2022 -0.0005 8 1 1.4704 -2.1375 -0.0014 9 7 3.3797 -1.2022 -0.0011 10 6 4.1122 -2.4634 0.1364 11 6 3.9304 -3.1900 1.4706 12 7 4.7982 -2.5801 2.4811 13 6 4.7812 -3.0375 3.7487 14 8 4.0479 -3.9544 4.0528 15 6 5.6743 -2.4105 4.7881 16 6 5.4615 -3.1098 6.1322 17 1 5.6150 -4.1820 6.0100 18 6 4.0604 -2.8588 6.6072 19 6 3.7502 -2.5675 7.8297 20 6 4.7496 -2.4307 8.9409 21 6 6.0748 -3.0829 8.5411 22 6 6.4706 -2.5742 7.1492 23 6 4.2829 -3.3222 -1.1183 24 6 5.4800 -2.5635 -0.5418 25 1 -0.4850 0.8401 0.0004 26 1 3.8647 -0.3670 -0.0925 27 1 4.1946 -4.2407 1.3510 28 1 2.8908 -3.1107 1.7888 29 1 5.3850 -1.8471 2.2379 30 1 5.4302 -1.3528 4.8866 31 1 6.7156 -2.5163 4.4839 32 1 3.2610 -2.9248 5.8841 33 1 2.7074 -2.4137 8.0648 34 1 4.3630 -2.9174 9.8364 35 1 4.9151 -1.3732 9.1472 36 1 6.8472 -2.8153 9.2623 37 1 5.9571 -4.1662 8.5155 38 1 6.4527 -1.4844 7.1386 39 1 7.4703 -2.9297 6.8997 40 1 4.2657 -4.4048 -0.9933 41 1 3.8498 -2.9490 -2.0463 42 1 5.8346 -1.6910 -1.0906 43 1 6.2503 -3.1470 -0.0376 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323470962.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:09:36 Heat of formation + Delta-G solvation = 0.051813 kcal Electronic energy + Delta-G solvation = -21633.113626 eV Core-core repulsion = 18485.904714 eV Total energy + Delta-G solvation = -3147.208911 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.85796 -38.38434 -37.46552 -33.76262 -33.03753 -32.67440 -31.02717 -30.37840 -28.09779 -25.79341 -23.61356 -22.52922 -22.20966 -21.83916 -19.96842 -19.07739 -17.96078 -17.67737 -16.81224 -16.17194 -15.69484 -15.23631 -15.00195 -14.30037 -14.26840 -14.12605 -13.62446 -13.43576 -12.92769 -12.73462 -12.72825 -12.46126 -12.33161 -12.12412 -12.06221 -11.47603 -11.20554 -11.09419 -11.02768 -10.96668 -10.61157 -10.43288 -10.29914 -10.15846 -9.65594 -9.61044 -9.37262 -8.92639 -8.88759 -8.60482 -7.38418 -5.83642 -3.22056 2.40832 2.95741 3.30588 3.32482 3.39563 3.47189 4.35118 4.51441 4.61828 4.63444 4.72529 4.95610 4.98111 5.09536 5.15220 5.22586 5.35961 5.38739 5.39856 5.49527 5.50638 5.60006 5.62430 5.69835 5.72533 5.79533 5.82323 5.95273 5.98227 6.18736 6.24368 6.29586 6.32222 6.36621 6.62364 6.66753 6.78439 6.85661 7.05943 7.86839 7.93441 8.35045 8.56518 9.11690 9.83141 10.01192 11.34055 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.017498 B = 0.004242 C = 0.003759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.811343 B = 6599.212945 C = 7447.001415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.010 3.990 3 Si 0.882 3.118 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.245 4.245 8 H 0.093 0.907 9 N -0.713 5.713 10 C 0.134 3.866 11 C 0.147 3.853 12 N -0.716 5.716 13 C 0.508 3.492 14 O -0.544 6.544 15 C -0.134 4.134 16 C -0.042 4.042 17 H 0.086 0.914 18 C -0.131 4.131 19 C -0.175 4.175 20 C -0.088 4.088 21 C -0.119 4.119 22 C -0.116 4.116 23 C -0.182 4.182 24 C -0.189 4.189 25 H 0.261 0.739 26 H 0.364 0.636 27 H 0.059 0.941 28 H 0.082 0.918 29 H 0.397 0.603 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.113 0.887 33 H 0.100 0.900 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.062 0.938 37 H 0.064 0.936 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.086 0.914 41 H 0.097 0.903 42 H 0.090 0.910 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.303 -4.541 12.122 20.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.187 4.187 3 Si 0.712 3.288 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.374 4.374 8 H 0.110 0.890 9 N -0.354 5.354 10 C 0.040 3.960 11 C 0.022 3.978 12 N -0.366 5.366 13 C 0.294 3.706 14 O -0.422 6.422 15 C -0.174 4.174 16 C -0.060 4.060 17 H 0.105 0.895 18 C -0.149 4.149 19 C -0.193 4.193 20 C -0.125 4.125 21 C -0.157 4.157 22 C -0.154 4.154 23 C -0.223 4.223 24 C -0.227 4.227 25 H 0.071 0.929 26 H 0.198 0.802 27 H 0.077 0.923 28 H 0.100 0.900 29 H 0.231 0.769 30 H 0.111 0.889 31 H 0.110 0.890 32 H 0.131 0.869 33 H 0.118 0.882 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.104 0.896 41 H 0.116 0.884 42 H 0.109 0.891 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 15.469 -5.226 12.350 20.473 hybrid contribution 0.613 1.703 -0.347 1.843 sum 16.082 -3.523 12.003 20.375 Atomic orbital electron populations 1.69700 1.05104 1.25925 1.56765 1.24686 0.95197 0.97137 1.01636 0.86592 0.79295 0.85147 0.77742 1.21078 1.21662 1.20258 1.18987 0.80028 0.94830 1.43578 0.88967 1.42106 1.03803 1.01394 1.88136 1.20070 0.94332 0.90722 0.90843 1.21215 0.95627 0.94649 0.86336 1.45962 1.43621 1.37770 1.09224 1.20590 0.83520 0.83479 0.83007 1.90682 1.41438 1.29808 1.80305 1.21708 1.00098 1.01619 0.94018 1.19794 0.93083 1.00635 0.92514 0.89548 1.22221 0.97604 0.98270 0.96778 1.22002 0.99249 1.03286 0.94783 1.20420 0.94292 1.00694 0.97123 1.21578 0.96895 1.00615 0.96593 1.21664 0.98145 1.00944 0.94618 1.23352 1.01382 0.97702 0.99846 1.23113 0.91403 1.03198 1.04996 0.92926 0.80209 0.92273 0.89953 0.76915 0.88891 0.88983 0.86867 0.88181 0.91515 0.91301 0.91892 0.91772 0.91625 0.91647 0.89550 0.88442 0.89149 0.89173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.80 13.97 55.49 0.78 -28.03 16 2 C 0.01 0.28 5.50 -17.43 -0.10 0.18 16 3 Si 0.88 21.46 27.68 -169.99 -4.70 16.75 16 4 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.28 -6.25 6.62 56.52 0.37 -5.87 16 7 C -0.24 -6.69 10.01 -15.06 -0.15 -6.84 16 8 H 0.09 2.75 8.06 -52.49 -0.42 2.33 16 9 N -0.71 -15.99 5.29 -47.23 -0.25 -16.24 16 10 C 0.13 2.43 2.16 -131.82 -0.28 2.14 16 11 C 0.15 2.64 5.72 -4.04 -0.02 2.62 16 12 N -0.72 -10.97 5.52 -60.29 -0.33 -11.30 16 13 C 0.51 7.84 7.46 -10.98 -0.08 7.76 16 14 O -0.54 -10.37 14.30 5.56 0.08 -10.29 16 15 C -0.13 -1.51 5.13 -27.88 -0.14 -1.66 16 16 C -0.04 -0.48 2.10 -92.11 -0.19 -0.68 16 17 H 0.09 1.09 7.94 -51.93 -0.41 0.68 16 18 C -0.13 -1.77 8.42 -35.90 -0.30 -2.08 16 19 C -0.18 -2.10 9.81 -35.90 -0.35 -2.45 16 20 C -0.09 -0.84 6.12 -28.18 -0.17 -1.01 16 21 C -0.12 -1.04 6.00 -26.52 -0.16 -1.20 16 22 C -0.12 -1.05 5.32 -26.55 -0.14 -1.19 16 23 C -0.18 -2.98 10.10 -26.73 -0.27 -3.25 16 24 C -0.19 -2.73 10.09 -26.73 -0.27 -3.00 16 25 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 26 H 0.36 7.97 5.98 -40.82 -0.24 7.73 16 27 H 0.06 1.00 7.94 -51.93 -0.41 0.59 16 28 H 0.08 1.80 7.77 -51.93 -0.40 1.40 16 29 H 0.40 5.27 8.44 -40.82 -0.34 4.92 16 30 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.11 1.86 6.54 -52.49 -0.34 1.52 16 33 H 0.10 1.18 8.06 -52.49 -0.42 0.75 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.06 0.58 8.13 -51.93 -0.42 0.16 16 38 H 0.07 0.58 8.10 -51.93 -0.42 0.16 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.09 1.26 8.08 -51.93 -0.42 0.84 16 41 H 0.10 1.72 8.14 -51.93 -0.42 1.29 16 42 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 43 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 LS Contribution 348.13 15.07 5.25 5.25 Total: -1.00 -31.97 348.13 -9.06 -41.03 By element: Atomic # 1 Polarization: 20.70 SS G_CDS: -7.23 Total: 13.47 kcal Atomic # 6 Polarization: -8.01 SS G_CDS: -2.64 Total: -10.65 kcal Atomic # 7 Polarization: -55.76 SS G_CDS: 0.19 Total: -55.57 kcal Atomic # 8 Polarization: -10.37 SS G_CDS: 0.08 Total: -10.29 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.70 Total: 16.75 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.97 -9.06 -41.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323470962.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.087 kcal (2) G-P(sol) polarization free energy of solvation -31.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.035 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds