Wall clock time and date at job start Tue Mar 31 2020 00:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86804 * 119.99861 * 2 1 4 4 H 1.48492 * 109.47038 * 270.00087 * 3 2 1 5 5 H 1.48503 * 109.47124 * 30.00218 * 3 2 1 6 6 H 1.48498 * 109.46728 * 149.99832 * 3 2 1 7 7 C 1.38814 * 120.00011 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99954 * 0.02562 * 7 2 1 9 9 N 1.36936 * 120.00008 * 179.97438 * 7 2 1 10 10 C 1.46497 * 119.99871 * 173.75248 * 9 7 2 11 11 C 1.53004 * 115.54959 * 295.37311 * 10 9 7 12 12 N 1.46496 * 109.47161 * 279.55926 * 11 10 9 13 13 C 1.34776 * 120.00212 * 178.34087 * 12 11 10 14 14 O 1.21282 * 119.99966 * 0.02562 * 13 12 11 15 15 C 1.50704 * 120.00342 * 179.97438 * 13 12 11 16 16 C 1.52998 * 109.47079 * 179.97438 * 15 13 12 17 17 H 1.09006 * 109.35782 * 54.72593 * 16 15 13 18 18 C 1.50058 * 109.36069 * 294.99930 * 16 15 13 19 19 C 1.29442 * 124.07995 * 222.68382 * 18 16 15 20 20 C 1.50072 * 124.07031 * 0.44959 * 19 18 16 21 21 C 1.53013 * 110.14695 * 342.86589 * 20 19 18 22 22 C 1.52950 * 109.40872 * 174.08740 * 16 15 13 23 23 C 1.53001 * 117.51883 * 81.07719 * 10 9 7 24 24 C 1.53001 * 117.49806 * 149.70756 * 10 9 7 25 25 H 0.97000 * 119.99758 * 359.97438 * 1 2 3 26 26 H 0.97007 * 119.99662 * 353.75438 * 9 7 2 27 27 H 1.08994 * 109.47205 * 159.55508 * 11 10 9 28 28 H 1.09007 * 109.46870 * 39.55281 * 11 10 9 29 29 H 0.97000 * 120.00546 * 358.33885 * 12 11 10 30 30 H 1.08995 * 109.47028 * 60.00148 * 15 13 12 31 31 H 1.08998 * 109.46641 * 299.99992 * 15 13 12 32 32 H 1.08000 * 117.96347 * 42.65952 * 18 16 15 33 33 H 1.07995 * 117.96640 * 180.46818 * 19 18 16 34 34 H 1.09002 * 109.35193 * 222.65662 * 20 19 18 35 35 H 1.09005 * 109.24764 * 103.00466 * 20 19 18 36 36 H 1.09007 * 109.64320 * 169.12385 * 21 20 19 37 37 H 1.08999 * 109.64459 * 289.53859 * 21 20 19 38 38 H 1.08998 * 109.43910 * 49.82273 * 22 16 15 39 39 H 1.09001 * 109.79884 * 289.21926 * 22 16 15 40 40 H 1.08998 * 117.49676 * 214.96799 * 23 10 9 41 41 H 1.08997 * 117.49719 * 359.97438 * 23 10 9 42 42 H 1.08998 * 117.49612 * 359.97438 * 24 10 9 43 43 H 1.08992 * 117.49758 * 144.99569 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4402 0.7001 7 6 2.0104 -1.2022 -0.0005 8 1 1.4704 -2.1375 -0.0014 9 7 3.3797 -1.2022 -0.0011 10 6 4.1122 -2.4634 0.1364 11 6 3.9304 -3.1900 1.4706 12 7 4.7982 -2.5801 2.4811 13 6 4.7812 -3.0375 3.7487 14 8 4.0479 -3.9544 4.0528 15 6 5.6743 -2.4105 4.7881 16 6 5.4615 -3.1098 6.1322 17 1 5.6150 -4.1820 6.0100 18 6 4.0604 -2.8588 6.6072 19 6 3.7502 -2.5675 7.8297 20 6 4.7496 -2.4307 8.9409 21 6 6.0748 -3.0829 8.5411 22 6 6.4706 -2.5742 7.1492 23 6 4.2829 -3.3222 -1.1183 24 6 5.4800 -2.5635 -0.5418 25 1 -0.4850 0.8401 0.0004 26 1 3.8647 -0.3670 -0.0925 27 1 4.1946 -4.2407 1.3510 28 1 2.8908 -3.1107 1.7888 29 1 5.3850 -1.8471 2.2379 30 1 5.4302 -1.3528 4.8866 31 1 6.7156 -2.5163 4.4839 32 1 3.2610 -2.9248 5.8841 33 1 2.7074 -2.4137 8.0648 34 1 4.3630 -2.9174 9.8364 35 1 4.9151 -1.3732 9.1472 36 1 6.8472 -2.8153 9.2623 37 1 5.9571 -4.1662 8.5155 38 1 6.4527 -1.4844 7.1386 39 1 7.4703 -2.9297 6.8997 40 1 4.2657 -4.4048 -0.9933 41 1 3.8498 -2.9490 -2.0463 42 1 5.8346 -1.6910 -1.0906 43 1 6.2503 -3.1470 -0.0376 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323470962.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:09:35 Heat of formation + Delta-G solvation = -21.316047 kcal Electronic energy + Delta-G solvation = -21634.040205 eV Core-core repulsion = 18485.904714 eV Total energy + Delta-G solvation = -3148.135491 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.03594 -39.51091 -38.73667 -35.32647 -34.80158 -33.58357 -32.37828 -31.86613 -29.20248 -26.96643 -25.64876 -23.50677 -23.17168 -22.88181 -21.23110 -20.58016 -19.73554 -18.83107 -18.04897 -17.35070 -16.83858 -16.56175 -16.35484 -16.08799 -15.46117 -15.07049 -14.75953 -14.68238 -14.66767 -14.13300 -13.82624 -13.58111 -13.47081 -13.17117 -13.04717 -12.98096 -12.92157 -12.35848 -12.28504 -12.18493 -11.87024 -11.80767 -11.69655 -11.40718 -11.09103 -11.01283 -10.85728 -10.51438 -9.99540 -9.87581 -9.33454 -8.04156 -5.40141 1.35186 1.40210 1.40758 1.47449 1.74095 2.26329 2.46553 3.00441 3.28855 3.39356 3.73085 3.80060 3.82035 3.92721 4.04982 4.14583 4.26721 4.30977 4.42469 4.50725 4.54968 4.71696 4.74073 4.79753 4.82192 4.83799 4.88573 4.93425 5.03582 5.08765 5.12015 5.16658 5.24568 5.36124 5.44026 5.50825 5.54838 5.77753 5.80799 6.09940 6.19287 6.67961 7.05461 7.36903 7.79276 7.99191 9.17499 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.017498 B = 0.004242 C = 0.003759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.811343 B = 6599.212945 C = 7447.001415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.986 5.986 2 C -0.065 4.065 3 Si 0.958 3.042 4 H -0.276 1.276 5 H -0.301 1.301 6 H -0.243 1.243 7 C -0.225 4.225 8 H 0.048 0.952 9 N -0.714 5.714 10 C 0.098 3.902 11 C 0.160 3.840 12 N -0.709 5.709 13 C 0.501 3.499 14 O -0.589 6.589 15 C -0.124 4.124 16 C -0.039 4.039 17 H 0.071 0.929 18 C -0.155 4.155 19 C -0.168 4.168 20 C -0.088 4.088 21 C -0.120 4.120 22 C -0.110 4.110 23 C -0.189 4.189 24 C -0.142 4.142 25 H 0.257 0.743 26 H 0.371 0.629 27 H 0.069 0.931 28 H 0.027 0.973 29 H 0.411 0.589 30 H 0.103 0.897 31 H 0.132 0.868 32 H 0.071 0.929 33 H 0.092 0.908 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.056 0.944 38 H 0.073 0.927 39 H 0.087 0.913 40 H 0.103 0.897 41 H 0.081 0.919 42 H 0.104 0.896 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.009 -3.450 13.017 24.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.636 5.636 2 C -0.256 4.256 3 Si 0.784 3.216 4 H -0.202 1.202 5 H -0.228 1.228 6 H -0.167 1.167 7 C -0.356 4.356 8 H 0.066 0.934 9 N -0.356 5.356 10 C 0.006 3.994 11 C 0.034 3.966 12 N -0.360 5.360 13 C 0.289 3.711 14 O -0.470 6.470 15 C -0.164 4.164 16 C -0.058 4.058 17 H 0.089 0.911 18 C -0.174 4.174 19 C -0.186 4.186 20 C -0.125 4.125 21 C -0.157 4.157 22 C -0.147 4.147 23 C -0.229 4.229 24 C -0.179 4.179 25 H 0.066 0.934 26 H 0.205 0.795 27 H 0.088 0.912 28 H 0.046 0.954 29 H 0.247 0.753 30 H 0.121 0.879 31 H 0.149 0.851 32 H 0.089 0.911 33 H 0.110 0.890 34 H 0.096 0.904 35 H 0.101 0.899 36 H 0.105 0.895 37 H 0.075 0.925 38 H 0.092 0.908 39 H 0.106 0.894 40 H 0.121 0.879 41 H 0.100 0.900 42 H 0.122 0.878 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 20.263 -4.154 13.238 24.558 hybrid contribution -0.940 1.200 -0.613 1.643 sum 19.322 -2.954 12.625 23.269 Atomic orbital electron populations 1.69912 1.07430 1.26691 1.59551 1.25570 0.96080 1.01486 1.02455 0.85373 0.78869 0.79158 0.78154 1.20249 1.22843 1.16740 1.18847 0.82435 0.93063 1.41207 0.93372 1.41945 1.01946 1.03431 1.88281 1.20274 0.97863 0.89868 0.91362 1.20855 0.93238 0.95608 0.86949 1.45893 1.43169 1.38016 1.08872 1.21469 0.83304 0.82836 0.83487 1.90669 1.43328 1.32006 1.80949 1.21761 1.01004 1.01410 0.92196 1.19792 0.92450 0.99966 0.93557 0.91096 1.22145 0.98074 1.00532 0.96600 1.22252 0.99881 1.01317 0.95175 1.20494 0.94055 1.01811 0.96134 1.21613 0.96901 1.00095 0.97104 1.21658 0.98102 1.01304 0.93642 1.23381 1.02925 0.98673 0.97893 1.23238 0.89853 1.02846 1.01964 0.93415 0.79488 0.91244 0.95449 0.75259 0.87852 0.85053 0.91119 0.88972 0.90405 0.89949 0.89485 0.92514 0.90842 0.89403 0.87902 0.90028 0.87785 0.85840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -64.07 13.97 21.65 0.30 -63.77 16 2 C -0.06 -3.81 5.50 84.86 0.47 -3.34 16 3 Si 0.96 44.53 27.68 68.60 1.90 46.43 16 4 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 5 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 6 H -0.24 -9.85 6.62 99.48 0.66 -9.19 16 7 C -0.22 -12.73 10.01 84.03 0.84 -11.89 16 8 H 0.05 3.09 8.06 -2.91 -0.02 3.07 16 9 N -0.71 -31.65 5.29 -303.34 -1.60 -33.25 16 10 C 0.10 3.45 2.16 3.61 0.01 3.46 16 11 C 0.16 5.80 5.72 86.38 0.49 6.29 16 12 N -0.71 -20.91 5.52 -463.06 -2.55 -23.46 16 13 C 0.50 15.30 7.46 87.66 0.65 15.95 16 14 O -0.59 -23.46 14.30 -3.04 -0.04 -23.50 16 15 C -0.12 -2.52 5.13 29.85 0.15 -2.36 16 16 C -0.04 -0.85 2.10 -11.76 -0.02 -0.88 16 17 H 0.07 1.76 7.94 -2.38 -0.02 1.74 16 18 C -0.16 -4.33 8.42 27.04 0.23 -4.10 16 19 C -0.17 -4.03 9.81 27.04 0.27 -3.76 16 20 C -0.09 -1.47 6.12 29.66 0.18 -1.29 16 21 C -0.12 -1.72 6.00 30.73 0.18 -1.54 16 22 C -0.11 -1.60 5.32 30.71 0.16 -1.44 16 23 C -0.19 -5.86 10.10 30.60 0.31 -5.55 16 24 C -0.14 -3.50 10.09 30.60 0.31 -3.19 16 25 H 0.26 15.93 8.31 -92.71 -0.77 15.15 16 26 H 0.37 15.34 5.98 -92.70 -0.55 14.79 16 27 H 0.07 2.35 7.94 -2.39 -0.02 2.33 16 28 H 0.03 1.28 7.77 -2.38 -0.02 1.26 16 29 H 0.41 9.71 8.44 -92.71 -0.78 8.92 16 30 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.13 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.07 2.55 6.54 -2.91 -0.02 2.53 16 33 H 0.09 2.26 8.06 -2.91 -0.02 2.24 16 34 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16 36 H 0.09 0.88 8.14 -2.38 -0.02 0.86 16 37 H 0.06 0.91 8.13 -2.39 -0.02 0.89 16 38 H 0.07 0.99 8.10 -2.39 -0.02 0.97 16 39 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.10 2.83 8.08 -2.39 -0.02 2.81 16 41 H 0.08 2.81 8.14 -2.39 -0.02 2.79 16 42 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 43 H 0.12 2.32 8.14 -2.39 -0.02 2.31 16 Total: -1.00 -75.94 348.13 1.84 -74.10 By element: Atomic # 1 Polarization: 37.48 SS G_CDS: -0.39 Total: 37.09 kcal Atomic # 6 Polarization: -17.87 SS G_CDS: 4.23 Total: -13.64 kcal Atomic # 7 Polarization: -116.63 SS G_CDS: -3.86 Total: -120.48 kcal Atomic # 8 Polarization: -23.46 SS G_CDS: -0.04 Total: -23.50 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 1.90 Total: 46.43 kcal Total: -75.94 1.84 -74.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323470962.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.786 kcal (2) G-P(sol) polarization free energy of solvation -75.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds