Wall clock time and date at job start Tue Mar 31 2020 00:09:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86802 * 120.00442 * 2 1 4 4 H 1.48498 * 109.47322 * 239.99546 * 3 2 1 5 5 H 1.48495 * 109.47201 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47130 * 119.99793 * 3 2 1 7 7 C 1.38820 * 119.99572 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99672 * 179.97438 * 7 2 1 9 9 N 1.36930 * 120.00164 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00318 * 185.57561 * 9 7 2 11 11 C 1.52996 * 115.55783 * 272.02772 * 10 9 7 12 12 N 1.46497 * 109.47528 * 325.04233 * 11 10 9 13 13 C 1.34777 * 120.00169 * 174.22236 * 12 11 10 14 14 O 1.21277 * 120.00290 * 359.97438 * 13 12 11 15 15 C 1.50705 * 119.99890 * 180.02562 * 13 12 11 16 16 C 1.52996 * 109.47177 * 179.97438 * 15 13 12 17 17 H 1.09009 * 109.35242 * 304.72318 * 16 15 13 18 18 C 1.50069 * 109.36036 * 64.30370 * 16 15 13 19 19 C 1.29446 * 124.07124 * 137.33749 * 18 16 15 20 20 C 1.50064 * 124.07903 * 359.53638 * 19 18 16 21 21 C 1.53029 * 110.14445 * 17.12700 * 20 19 18 22 22 C 1.53022 * 109.36011 * 185.00139 * 16 15 13 23 23 C 1.53002 * 117.49814 * 57.71317 * 10 9 7 24 24 C 1.52998 * 117.49890 * 126.33823 * 10 9 7 25 25 H 0.97007 * 119.99681 * 359.97438 * 1 2 3 26 26 H 0.97012 * 119.99894 * 5.56755 * 9 7 2 27 27 H 1.09005 * 109.47078 * 85.04149 * 11 10 9 28 28 H 1.09001 * 109.47125 * 205.03781 * 11 10 9 29 29 H 0.96997 * 119.99621 * 354.21511 * 12 11 10 30 30 H 1.08999 * 109.46601 * 299.99659 * 15 13 12 31 31 H 1.09005 * 109.47118 * 59.99444 * 15 13 12 32 32 H 1.07998 * 117.96603 * 317.32469 * 18 16 15 33 33 H 1.08001 * 117.96025 * 179.51412 * 19 18 16 34 34 H 1.08993 * 109.35879 * 256.92390 * 20 19 18 35 35 H 1.08998 * 109.36157 * 137.33636 * 20 19 18 36 36 H 1.09000 * 109.64268 * 190.87593 * 21 20 19 37 37 H 1.09003 * 109.81494 * 70.35448 * 21 20 19 38 38 H 1.09001 * 109.63484 * 310.03692 * 22 16 15 39 39 H 1.09000 * 109.64418 * 70.66371 * 22 16 15 40 40 H 1.09001 * 117.49977 * 0.02562 * 23 10 9 41 41 H 1.08996 * 117.49715 * 214.98431 * 23 10 9 42 42 H 1.09007 * 117.49670 * 145.02585 * 24 10 9 43 43 H 1.09000 * 117.50161 * 0.02562 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2124 5 1 1.2854 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0101 -1.2023 0.0005 8 1 3.0901 -1.2023 0.0001 9 7 1.3254 -2.3881 0.0005 10 6 2.0526 -3.6539 0.1244 11 6 2.5390 -4.2670 -1.1903 12 7 1.5626 -3.9933 -2.2476 13 6 1.8348 -4.3377 -3.5219 14 8 2.8882 -4.8739 -3.7933 15 6 0.8306 -4.0556 -4.6096 16 6 1.3823 -4.5411 -5.9515 17 1 2.3540 -4.0805 -6.1305 18 6 1.5417 -6.0328 -5.9134 19 6 1.2130 -6.8223 -6.8852 20 6 0.6174 -6.3572 -8.1817 21 6 0.8486 -4.8549 -8.3589 22 6 0.4180 -4.1423 -7.0707 23 6 2.9326 -3.8450 1.3613 24 6 1.6160 -4.6138 1.2328 25 1 -0.4850 0.8401 0.0004 26 1 0.3588 -2.3900 -0.0813 27 1 3.5001 -3.8301 -1.4613 28 1 2.6509 -5.3445 -1.0692 29 1 0.7202 -3.5642 -2.0305 30 1 -0.1004 -4.5776 -4.3888 31 1 0.6424 -2.9831 -4.6611 32 1 1.9566 -6.4752 -5.0198 33 1 1.3780 -7.8816 -6.7549 34 1 -0.4534 -6.5603 -8.1808 35 1 1.0843 -6.8944 -9.0071 36 1 0.2543 -4.4890 -9.1962 37 1 1.9048 -4.6633 -8.5480 38 1 -0.5953 -4.4445 -6.8060 39 1 0.4548 -3.0631 -7.2189 40 1 2.9702 -3.0291 2.0832 41 1 3.8580 -4.4075 1.2385 42 1 1.6754 -5.6824 1.0255 43 1 0.7875 -4.3039 1.8697 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323470968.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:09:38 Heat of formation + Delta-G solvation = -3.296313 kcal Electronic energy + Delta-G solvation = -21641.749135 eV Core-core repulsion = 18494.395038 eV Total energy + Delta-G solvation = -3147.354097 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -39.73888 -38.27035 -37.32547 -33.60168 -33.06679 -32.58296 -30.99336 -29.69910 -27.99636 -25.66831 -23.94212 -22.42394 -22.03926 -21.79044 -19.80979 -19.01147 -17.91582 -17.07741 -16.66901 -16.19219 -15.70688 -15.18837 -14.70079 -14.25496 -14.23137 -13.88358 -13.47865 -13.32249 -13.18974 -12.86132 -12.69297 -12.31975 -12.16930 -12.07594 -11.84914 -11.36431 -11.01474 -10.90494 -10.88809 -10.88398 -10.54359 -10.31590 -10.27691 -10.09849 -9.76914 -9.40442 -9.12782 -8.99515 -8.91601 -8.41506 -7.16613 -5.87870 -3.19113 2.40346 3.08703 3.38873 3.43760 3.44485 3.67801 4.40746 4.54945 4.68158 4.71826 4.81371 5.09739 5.17773 5.22359 5.28446 5.32661 5.45347 5.46817 5.50130 5.56154 5.61628 5.69323 5.71974 5.83556 5.85584 5.89299 5.90411 6.05993 6.15706 6.22049 6.32727 6.36244 6.40021 6.45189 6.66462 6.78356 6.80056 6.99441 7.06327 7.66726 8.07565 8.30237 8.71030 9.41343 9.93927 10.29653 11.33792 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.018117 B = 0.004129 C = 0.003569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.160385 B = 6779.401994 C = 7843.956868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.008 4.008 3 Si 0.907 3.093 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.237 4.237 8 H 0.071 0.929 9 N -0.689 5.689 10 C 0.120 3.880 11 C 0.148 3.852 12 N -0.704 5.704 13 C 0.509 3.491 14 O -0.557 6.557 15 C -0.134 4.134 16 C -0.043 4.043 17 H 0.087 0.913 18 C -0.126 4.126 19 C -0.178 4.178 20 C -0.087 4.087 21 C -0.120 4.120 22 C -0.117 4.117 23 C -0.173 4.173 24 C -0.190 4.190 25 H 0.257 0.743 26 H 0.387 0.613 27 H 0.065 0.935 28 H 0.055 0.945 29 H 0.406 0.594 30 H 0.091 0.909 31 H 0.097 0.903 32 H 0.111 0.889 33 H 0.098 0.902 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.065 0.935 39 H 0.067 0.933 40 H 0.098 0.902 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.829 -11.323 -10.985 15.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.205 4.205 3 Si 0.738 3.262 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.368 4.368 8 H 0.089 0.911 9 N -0.330 5.330 10 C 0.027 3.973 11 C 0.021 3.979 12 N -0.355 5.355 13 C 0.296 3.704 14 O -0.436 6.436 15 C -0.174 4.174 16 C -0.061 4.061 17 H 0.105 0.895 18 C -0.144 4.144 19 C -0.196 4.196 20 C -0.124 4.124 21 C -0.157 4.157 22 C -0.154 4.154 23 C -0.212 4.212 24 C -0.228 4.228 25 H 0.066 0.934 26 H 0.222 0.778 27 H 0.083 0.917 28 H 0.074 0.926 29 H 0.242 0.758 30 H 0.109 0.891 31 H 0.115 0.885 32 H 0.129 0.871 33 H 0.116 0.884 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.117 0.883 41 H 0.102 0.898 42 H 0.103 0.897 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 0.005 -11.517 -11.133 16.018 hybrid contribution -0.180 1.173 0.326 1.231 sum -0.175 -10.343 -10.807 14.960 Atomic orbital electron populations 1.69638 1.05059 1.25981 1.57299 1.24745 0.95513 0.97666 1.02544 0.86269 0.78573 0.83395 0.77964 1.21200 1.21670 1.21200 1.19134 0.91079 0.83422 1.43118 0.91123 1.41687 1.05720 0.98567 1.87034 1.20244 0.99826 0.89553 0.87723 1.21163 0.92145 0.97865 0.86734 1.45836 1.22014 1.60907 1.06726 1.20572 0.87919 0.78319 0.83609 1.90638 1.26343 1.43927 1.82730 1.21689 0.98739 1.03632 0.93373 1.19826 0.99584 0.93757 0.92950 0.89475 1.22244 0.98235 0.94934 0.99030 1.21975 1.02701 0.99125 0.95823 1.20406 1.00371 0.95869 0.95802 1.21589 1.01626 0.95080 0.97431 1.21680 0.99123 1.00155 0.94473 1.23099 0.93551 1.02604 1.01923 1.23316 0.99020 0.96553 1.03906 0.93352 0.77810 0.91702 0.92639 0.75806 0.89105 0.88469 0.87064 0.88421 0.91347 0.91650 0.91876 0.91768 0.91578 0.91467 0.88341 0.89815 0.89716 0.89013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.50 13.07 55.49 0.73 -25.77 16 2 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 3 Si 0.91 21.80 29.55 -169.99 -5.02 16.78 16 4 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.24 -6.21 9.75 -15.06 -0.15 -6.35 16 8 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 9 N -0.69 -15.88 4.50 -47.23 -0.21 -16.09 16 10 C 0.12 2.27 2.51 -131.82 -0.33 1.94 16 11 C 0.15 2.66 5.90 -4.05 -0.02 2.63 16 12 N -0.70 -12.15 5.39 -60.29 -0.33 -12.47 16 13 C 0.51 8.55 7.46 -10.98 -0.08 8.46 16 14 O -0.56 -10.81 14.23 5.56 0.08 -10.73 16 15 C -0.13 -1.77 5.14 -27.88 -0.14 -1.91 16 16 C -0.04 -0.54 2.12 -92.07 -0.19 -0.73 16 17 H 0.09 1.24 7.96 -51.92 -0.41 0.83 16 18 C -0.13 -1.66 8.41 -35.90 -0.30 -1.96 16 19 C -0.18 -2.03 9.80 -35.90 -0.35 -2.38 16 20 C -0.09 -0.82 6.12 -28.18 -0.17 -1.00 16 21 C -0.12 -1.13 6.01 -26.52 -0.16 -1.29 16 22 C -0.12 -1.20 5.30 -26.52 -0.14 -1.34 16 23 C -0.17 -3.01 9.90 -26.73 -0.26 -3.28 16 24 C -0.19 -3.10 10.10 -26.73 -0.27 -3.37 16 25 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 26 H 0.39 9.37 7.94 -40.81 -0.32 9.04 16 27 H 0.06 1.28 8.13 -51.93 -0.42 0.86 16 28 H 0.06 0.92 7.90 -51.93 -0.41 0.51 16 29 H 0.41 6.97 7.69 -40.82 -0.31 6.65 16 30 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.11 1.68 6.47 -52.49 -0.34 1.34 16 33 H 0.10 1.03 8.06 -52.49 -0.42 0.61 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.64 8.13 -51.93 -0.42 0.21 16 38 H 0.07 0.65 8.10 -51.93 -0.42 0.23 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.10 1.88 8.14 -51.93 -0.42 1.46 16 41 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 42 H 0.08 1.20 8.05 -51.92 -0.42 0.78 16 43 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 LS Contribution 349.93 15.07 5.27 5.27 Total: -1.00 -29.19 349.93 -9.42 -38.61 By element: Atomic # 1 Polarization: 22.58 SS G_CDS: -7.26 Total: 15.32 kcal Atomic # 6 Polarization: -8.23 SS G_CDS: -2.68 Total: -10.91 kcal Atomic # 7 Polarization: -54.53 SS G_CDS: 0.19 Total: -54.34 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: 0.08 Total: -10.73 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -29.19 -9.42 -38.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323470968.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.309 kcal (2) G-P(sol) polarization free energy of solvation -29.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds